LOC110490081 (LOC106580643)


Basic Information

Item Value
gene id LOC110490081
gene name LOC106580643
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41925174 ~ 41951832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563229.2
TTGTCGCATATTGTGGGCACATGCGCTGTTCTTGTGGATGCGCCGGTGTATCATGGCGACATACGTGGATATTCTGAAGAGCGAGTTTCCCGAAATTGACACCGAAGTGTTCGAATATATTACGGGTGTGTTGGACTGTGGAGGGGTGGAGtttgaggatggagaggaggtgtATGATGCGATTGGTGGGCTGCTGCAGGGGTCATCGGCTGACTGTAAAAACGAGGATGACATCCGGGACATCTGTCAGCAGATGTTCAACACTCTTAAACTGAGTAACGGCCATGCCGCTTCAAAGCAAGTGCTGCTCGACACTCCGGTGCAGTTGTCTCAGATATCTGCAGAGTGTGTATCTGTCACTAACGATGTCCAAGGGATCTGGATGATGAAGAGGGGCCAGAATACAACGGTGGACGCAAGGAAGCTAGAGAAGGCCGAAGCCAAGCTGAAGCAAAAACAAGGGAGGAGGAATGAACGGGATTCACAAAAAACAACTAGTCCACTGGTACTGGAGGAGGCATCAGCCAGCCAGGCCAGTAGCAAAAAGGACAGTCGCGTCGACTTGTCCGGGAAGAATCGCACCTACGACATCCGCATCGAGAACTTTGACGTGTCGTTTGGCGAGCGGTCCTTGCTGCAGGCGGCGGAGCTGTCGCTGTCGACAGGTCGCCGCTACGGCCTGATTGGCCGCAACGGCCTTGGGAAGACCACGCTACTGAAGATGCTGGCGAGCCGCAGCCTGCGCGTCCCCGCCCACATCACGATCCTGCACGTGGAGCAGGAGGTCGCTGGCGACGACACAGGGGCACTGCAGAGCGTGCTTGAGAGCGACACGGTCCGGGAGGGGCTCCTGACGGAGGAACGCCTGCTGAATGCGCGCATAGCCAACGGAACTGCTGAAGGAATGGAGACTGTTCGACTGTCGGAGATCTATGCTAAACTGGAGGAGATTGAAGCAGATAAGGCACCTGCCCGTGCTTCAATCATCCTATGTGGTTTAGGTTTTTCTCCCAAAATGCAAACGCTGACAACCAAGGAGTTTTCTGGAGGGTGGCGAATGAGATTAGCTCTGGCTAGAGCTCTCTTCGCCAAGCCTGATCTTTTGTTACTTGATGAGCCCACCAACATGTTGGATGTCCGAGCCATTCTTTGGCTGGAGAATTACCTGCAGACCTGGCAGACCACCATCCTGGTGGTGTCCCACGACCGGAACTTCCTCAACGCCGTGGTGACTGACATCATCCACCTGCACTCGCAGCGGCTGGAGAGTTACCGCGGCGACTACGAGAACTTTGTCAAGACCAAAGAGGACCGCCTGAAGAACCAGCAGAGGGAGTACGAGGCCCAGTTTCAGTACAGAGAGCACATCCAGGTGTTTATCGACCGGTTCAGATACAACGCCAACAGAGCGGCACAGGTGCAGAGCAAACTGAAGCTCTTAGAAAAACTGCCTGAACTCAAACCTCTGGAGAAGGAAACCGAAGTCACCTTAAAGTTCCCTGATAACTTTGAGAAGCTGTCTCCCCCGGTGCTCCAGTTGGATGAGGtggagttctactataacactgaCCAGCGCCTCttcacacagctgtctgtgtctgcagacCTGGAGTCTCGCATCTGCATCgTGGGTGAGAACGGGGCGGGTAAATCCACCATGCTCAAGCTACTGATGGGAGAGTTAACGCCTGTCAACGGCATCAGACACGCCCATCGGAACCTGAAGATCGGTTATTTCAGTCAGCACCACGTGGATCAACTGGACCTCAACGTGTGTTCAATTGAGCTGCTACTCAACAAATTCCCAGGTCGTAACGAGGAGGAGTACAGACACCAGCTGGGCGGCTATGGAATAACAGGGGAGCTGGCAACTCGGCCTGTGGCCAGTTTGTCAGGAGGGCAGAAGAGCCGGGTTGCCTTCGCTCAGATGACAATGCCTTGccccAACTTCTATATCCTTGACGAGCCAACCAATCACCTGGACATGGAAACGATCGAGGCTCTAGCGAAGGCGCTCAACAAATTCAAAgGTGGAGTGGTCCTTGTCTCTCACGACGAGCGTCTGATCCGGCTCGtgtgcagagagctgtgggtctGTGAGCACGGGAACGTGCGGCGAGTGGAGGGGGGCTTCGACGAGTACCGGGATATCTTGCAAGAACAGTTCCGCAAGGAGGGCTACCTGTGAGTGGTAACTCACCCATTACGCCAACTATGACAGTCATGCCAAGTTGCCAATTGACTTCAATAAcctaaagccccccccccccccccactcttcaCTCTCTGACTGCCAATCATCATCCCCGGGGGGAGAACTGAGTTTAACTGTCCCGGCATCCTCTCTGCTCCCCCACACTaccgtttttgttttgtttgtgatTTAGTTCGGCCCGGCAGTTCAAAGTGGCATACTCTTGTCCATTGTCCTGAAGCAGACACGTTTTAGGGTACATGGAGGGTACAACATCTGTCCACGTGGAATGTCGATTGTGTGCGTACTCCGAAACTGCTCCGGCCTCGCCACTCCCAACCTTTCTGATCATAATAGTTGGAGCTGGTTTGGTTCACTTCAATATCAAGGAGGATTTTCCATCCTGTGAAGGTGGGGGGGCTGTACCCTCTAACTGTTAACCCCATGTGGGCAGCCATCTTGGAATAACGCTACATCCTTTTAGCTCTCATTAATATCAGTGAAGGGATGAATGTCTCCATTTCTTCATCCATGTTGAATATGTGTGCGATTGAGTGCGAGAGAGGATACATTTCAAGTGATATGGGATGATGTTTCTCCTGAACATGTGTGCTCGTGATGGAGAGGGATCATCTCTTAATCAGTGGAACCTGGGGCTGagctgaaatggcaccctgttccctacatagtacagtATTTTGGGAACAAGCCAAAAGTGCACCATAGCGTCATTTCAGACACCCCTGGTCGTGTTCAttgggcaccaaacagaagaaaacagtcTGAAACGGAGGGACTAAGTGGACTTGTTCAATAAGAAACGCTCCTTTTCTGTTCCAAATGTTTTCTGTTGCGTACCCTAATGAACACGATCCTGGAAACATCCATATGTGTTAGCATGGGAACCCACCAGCACAACAACAACTTGTACAACAGCAGCAGCTGGCTCCAGGTCTCTTGGGAAGAAGCAGCAGTATCTCCAAGTAAAGAGGggtattatattttatatatatatatatatatatatatatatatacacacatacatacacacacatacatacacacacatacatacacacacacacacacatcttaaaGACAATTATCAGAATAAAAAACGAAATTCCTTCTGCTTCAACGTTATATCACTAACTTATAAATAGCTGTTGAAAGAACTATTCAATCATAACGCCATGCTAAATAAAAAGCTTTAATCATCCATTC

Function

NR:

description
PREDICTED: ATP-binding cassette sub-family F member 3-like

GO: NA

KEGG:

id description
K06158 ABCF3; ATP-binding cassette, subfamily F, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563229.2 True 3420 mRNA 0.51 21 41925174 41951832

Neighbor

gene id symbol gene type direction distance location
iqcg iqcg coding upstream 89044 41810243 ~ 41836130 (+)
LOC110490072 LOC106612410 coding upstream 300134 41588463 ~ 41625040 (+)
LOC110490073 NA coding upstream 337054 41583335 ~ 41588120 (+)
LOC110490071 clrn1 coding upstream 357323 41557648 ~ 41567851 (+)
trnap-cgg-207 NA coding upstream 387679 41537424 ~ 41537495 (+)
LOC118938919 NA coding downstream 67644 42019476 ~ 42023326 (+)
LOC110490085 LOC106612498 coding downstream 88122 42039954 ~ 42054610 (+)
LOC110490086 LOC106612440 coding downstream 202459 42154291 ~ 42255013 (+)
trnaa-ugc-68 NA coding downstream 370214 42322046 ~ 42322117 (+)
trnat-ugu-37 NA coding downstream 371712 42323544 ~ 42323615 (+)
G1293261 NA non-coding upstream 58449 41862216 ~ 41866725 (+)
G1293224 LOC106612432 non-coding upstream 115002 41805689 ~ 41810172 (+)
G1293174 NA non-coding upstream 175481 41740346 ~ 41749693 (+)
G1293169 NA non-coding upstream 189680 41733476 ~ 41735494 (+)
G1293077 NA non-coding upstream 298795 41626122 ~ 41626379 (+)
G1293597 NA non-coding downstream 51546 42003378 ~ 42003587 (+)
G1293603 NA non-coding downstream 57699 42009531 ~ 42050808 (+)
G1293626 LOC106612439 non-coding downstream 89281 42041113 ~ 42042826 (+)
G1293637 NA non-coding downstream 117828 42069660 ~ 42069949 (+)
G1293769 NA non-coding downstream 249598 42201430 ~ 42201903 (+)
G1293295 NA other upstream 15563 41909034 ~ 41909611 (+)
G1293072 NA other upstream 337030 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 1794440 40089464 ~ 40132600 (+)
G1291464 NA other upstream 1857267 40067558 ~ 40067907 (+)
G1290614 NA other upstream 2798165 39126272 ~ 39127009 (+)
G1294319 NA other downstream 813021 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 1645092 43596924 ~ 43597464 (+)
G1295730 NA other downstream 1964346 43916178 ~ 43916479 (+)
G1295845 NA other downstream 2077604 44029436 ~ 44029861 (+)
cblb cblb other downstream 2369671 44173352 ~ 44326246 (+)

Expression


Co-expression Network