LOC118938919


Basic Information

Item Value
gene id LOC118938919
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42019476 ~ 42023326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036313.1
GCCGCCCACTGTGACTTGCCTGTGGGCGTGCTGGCAGCATAGAGCAGCTTTTCGATTGTGCGTCAAGAATCTAGCAGAGCAAGTTCgtatgaaggtctggttattGAATGGTGTGAGGGTTGAAAATATGCTTGGCATATAATGTGACTGGCCTTGGGTGTAGGCAGCTATCATGAATTGTTGGGGGCACATACAGAACGTAGGGTAGGGAACAAacggtcttttgttagataacaggagccaggtgtgtGATAACTGTATCGAGTGCATGAGCGCATAGTTCAATAGTAATATCCTCTAAAACGCTCTGGTGGCAAACAAACTTTGCTGCTCTGTTTCCAATTGTCCACATGAGGGAACCTGTTCAAATACAGAGAGCTGTGAAAGCAGATGCAGCTGAAGAGGAGTGGTactcagtcctggtcctggggactcaAAGGGGTGCATATTTGagtttttgccttagcactacacagctgattcagatgatcaactcatcatcaagtttcaagtgATACCTTGTAACTGGAGATTCCTTCAAAACGATTGCCAACAGTTACCGTGTAGGGCACTGCAAGATTGGGTGACCAGGGCCATCTGGGACTGCCTCCTGGGGGAATTCAGGTGTGTGAAGGCTACCTGTGTCCTGCataacttcatgaggatggacacgAGGACCAGGAGCGGCTCTGCAGCTCGACACCGTGTGCCAGAGGAGAAGTCTGCTGCTCTGCAGGATGTTTCAAGGatatgttttgatgtgagagaggatgccaaccCCCAGTCTCATCAAAGCCACATCAAAGCCACatcacccgctcttaagataaccttcgggccgACTAGATactatgtaattgtgatgaactgagagaatattagcatagcactgtgattcattaatcatatgctgtcttccctgctcctgttcttacctctttccctttttGTCTTTaacacctctctccacctctttcttccTTTGTTTTTATAATACACACCAAATGTGCAGTGAAGTGCAGATTACAATTACAAtattataatgcatgtattatgtatttatagcACTTGTCTCTCATTTGATGAAATACACCTGTCCTGTTTATCAgatcaatgcagatgaagggcATTAGATATTGAGATGAACTGGTTTTAGACATGACACATAGGATGTGTAGcgtactgttttttttatttttttattctatttttgtatatatgaattacaaatcagcctttaatTAGTTAAATCCTGGTTCTAGTCTgttagttacaatgtgtaaccattaatgtcccaggaccaagattggtaaacactgttgaagtgtataattgtaatacatacatgcagacacagcatcctTCAGACTGGAATTTGATactattggatatgactgaaaaattgTCTCAAAGACATTCATACCTGAACtccacctttatttgccaaggtagagtacatgatcagtgaatatattaaatgtacaggctacaatgtggggctctcatgcatggtaataactacatgtatatACGACTTGCATTCTTGGCACAACatgatattatattctactcaatccataggcttcataAATGTCATTCAGGCtgttttgaagttgatacaactggCTATGATAGCGGAGGTTCATAGCTcggttctgaactaatatgtataccaaacgtttgggtccatacacagatcgtCTAGATAGATAGCTACACATCCATGGGCATACAGGGATTTTAATCATCCACTTCATCTATCTGCATTGCATGGCAGATAtcagcaaggcaagcttacaaaattgtacattcaatttgcgcTAAATGCTTTAtttagctagattctttacatccacatAAAACATATATTGACTGATATTGATTTATTTAGGCGGGGCTAATTAATATTTTAGGGGGGCTTTAGTCCCAAGGCTATAGGCCAAGCAACGTCccttgtgtcgaggcacagatctggggaagggtaccaaaacatttctgcagcgttgaaAGTACCCAATAACACACTggccattcttaaatggaagaagtttggaaccaccaagactcttctagagctgaccgcccgcacaaactgagcaatcgggggaggtgaccaagaacccgatggtcactctgacagagctccagagttcctctattgAGTGccttttggagtttgccaaaaggcacctaaaggactttcagaccatgagaaaatattctctggtctgatgaaaccaagtcgAACACTGAATCTCAAGCGTCACATCCTTttgaaacctggcacaatccctacggtgagGAATGGTGATGGCagccagcatcatgctgtggggatgtgtttcagtggcagggactgggagactaggaaATATgaaaaagagaaagggaaag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036313.1 True 2394 mRNA 0.43 4 42019476 42023326

Neighbor

gene id symbol gene type direction distance location
LOC110490081 LOC106580643 coding upstream 67644 41925174 ~ 41951832 (+)
iqcg iqcg coding upstream 183346 41810243 ~ 41836130 (+)
LOC110490072 LOC106612410 coding upstream 394436 41588463 ~ 41625040 (+)
LOC110490073 NA coding upstream 431356 41583335 ~ 41588120 (+)
LOC110490071 clrn1 coding upstream 451625 41557648 ~ 41567851 (+)
LOC110490085 LOC106612498 coding downstream 16628 42039954 ~ 42054610 (+)
LOC110490086 LOC106612440 coding downstream 130965 42154291 ~ 42255013 (+)
trnaa-ugc-68 NA coding downstream 298720 42322046 ~ 42322117 (+)
trnat-ugu-37 NA coding downstream 300218 42323544 ~ 42323615 (+)
trnaa-ugc-69 NA coding downstream 301140 42324466 ~ 42324537 (+)
G1293597 NA non-coding upstream 15889 42003378 ~ 42003587 (+)
G1293315 NA non-coding upstream 71108 41947314 ~ 41948368 (+)
G1293261 NA non-coding upstream 152751 41862216 ~ 41866725 (+)
G1293224 LOC106612432 non-coding upstream 209304 41805689 ~ 41810172 (+)
G1293174 NA non-coding upstream 269783 41740346 ~ 41749693 (+)
G1293626 LOC106612439 non-coding downstream 17787 42041113 ~ 42042826 (+)
G1293637 NA non-coding downstream 46334 42069660 ~ 42069949 (+)
G1293769 NA non-coding downstream 178104 42201430 ~ 42201903 (+)
G1293798 NA non-coding downstream 233542 42256868 ~ 42257165 (+)
G1293974 NA non-coding downstream 280971 42304297 ~ 42304553 (+)
G1293295 NA other upstream 109865 41909034 ~ 41909611 (+)
G1293072 NA other upstream 431332 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 1888742 40089464 ~ 40132600 (+)
G1291464 NA other upstream 1951569 40067558 ~ 40067907 (+)
G1290614 NA other upstream 2892467 39126272 ~ 39127009 (+)
G1294319 NA other downstream 741527 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 1573598 43596924 ~ 43597464 (+)
G1295730 NA other downstream 1892852 43916178 ~ 43916479 (+)
G1295845 NA other downstream 2006110 44029436 ~ 44029861 (+)
cblb cblb other downstream 2298177 44173352 ~ 44326246 (+)

Expression


Co-expression Network