LOC110490085 (LOC106612498)


Basic Information

Item Value
gene id LOC110490085
gene name LOC106612498
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42039954 ~ 42054610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944383.1
CTCTGTGGTCAGGCATCTCACCTAACGTTACTGTTCAGGGGACGCGCTCCGGAAGCCCTGAATGCAGCATGCAGTTCGGGGCCGGGCTCAATGTGGGCGGAGAACCCTTCCTGTCTCCTTCAAGGTCACCTAAGTTGAGATGACAGGCATATGTGGGAGTGGGACCCATATGAAACATCGCAGAAAAGAGATTTTATTTATCGACCCAGTTCATCAACACCAGTTTTACCTCCTACAAAGACAAGAGCCCATAGAAACTCCTATGCACTAGCTTGTCCTGTGGGTGCCACTGTGTACAATGAGGACTTCTGTTGGAAGCCAGCCGCTAAACCTGACAGCATTCGCACAGGATCAGCCTCTGGGAACAGGAGGAACAACCCACATCCCAGTCAGTCATTCATGGTGTGGCGACTGCCCAAGGGCCAGAAGCAGAGCTCTGTAGGTGGTTGGTCCCCCTGGAAAAGTCCTCCTTCTGAGGAAGAGATCCGAAACGCTCTGACTGCCCAGTACCGGTCCACCTACCGGACTGACTACCTGGGCATGCCTCAAGGACTTCAGTTGATCCCCCCGATTCTCACTCCGCTGAACCACAAGCGCCAAGTCCCTCACTGCACGCACACAGAGATGAGGCACAACTACCGCCAGCCCAGAGAACGGTCTGAACTGCGGGGCAACATGTCGCGCTACGGCTGCAACGCACTGCACGGCGTTGCCCCCAGGGGTATAGTTCCTACTGTTGTTCATGGTCACATCCACAACCAGGAAAATAGTTCCCAGTTGACCACCTACGACAGACACTTTGGAGGGATAACGACCGATGTCTCGGCCGTGCTCCGCTCTCTACAACCCCAAGAGCTCCAGCAGTTCTGCAGACATCTACCTAACAAAGATAAAGAGGTTGTGCAGACATTTTTGCACCGAGTGCCCCCTACCAGCCAGGTGAAGAGAGGTACAAAGTCACCTGTCCTCCCTCCTGCGTTGTATAGGTCAGAGTGGATGTCTGGCTGGCCCGGGCCCCTGTGATACTTGACTTTCTGTAGCATCCCACCACAATCATGTGACAACCAGAGGCACTGTCCAGTCAACAAGTGCCTTTGTGGGactgtgtgtttgagtgtttaTGCTCTGTTTGTGAGTTTTATTTGCAGTGTTGTAACTGCCTTGACATTTCTGAAAATAAAGCCAATGAATCTAATGCAACGATA
>XM_021563237.2
AGGACTccagcacacactccagcacacACAGTTGCACACCACGGAGCCCTGAAAACAAGTTTTCTAGATAGGCCAAATTGAACAATGCAAACTCAAGATGAAGAATCCTGCGAACCAGCACCACGGAACTGTCCCGGAGCATCATCAAGCGCACGATCGACAAGTTTGCCTAACACATCCATCCCAGGCAGAGTTAGAGAAGAGATGTGTGCATTTGTGTCCAGACATCGCGCCCAATAACCTAAATATTCCGATTTCTGGAAACGTTTCATCACGAGCGAAAACAGCTATGGCAGCCGTGGATGACAGGCATATGTGGGAGTGGGACCCATATGAAACATCGCAGAAAAGAGATTTTATTTATCGACCCAGTTCATCAACACCAGTTTTACCTCCTACAAAGACAAGAGCCCATAGAAACTCCTATGCACTAGCTTGTCCTGTGGGTGCCACTGTGTACAATGAGGACTTCTGTTGGAAGCCAGCCGCTAAACCTGACAGCATTCGCACAGGATCAGCCTCTGGGAACAGGAGGAACAACCCACATCCCAGTCAGTCATTCATGGTGTGGCGACTGCCCAAGGGCCAGAAGCAGAGCTCTGTAGGTGGTTGGTCCCCCTGGAAAAGTCCTCCTTCTGAGGAAGAGATCCGAAACGCTCTGACTGCCCAGTACCGGTCCACCTACCGGACTGACTACCTGGGCATGCCTCAAGGACTTCAGTTGATCCCCCCGATTCTCACTCCGCTGAACCACAAGCGCCAAGTCCCTCACTGCACGCACACAGAGATGAGGCACAACTACCGCCAGCCCAGAGAACGGTCTGAACTGCGGGGCAACATGTCGCGCTACGGCTGCAACGCACTGCACGGCGTTGCCCCCAGGGGTATAGTTCCTACTGTTGTTCATGGTCACATCCACAACCAGGAAAATAGTTCCCAGTTGACCACCTACGACAGACACTTTGGAGGGATAACGACCGATGTCTCGGCCGTGCTCCGCTCTCTACAACCCCAAGAGCTCCAGCAGTTCTGCAGACATCTACCTAACAAAGATAAAGAGGTTGTGCAGACATTTTTGCACCGAGTGCCCCCTACCAGCCAGGTGAAGAGAGGTACAAAGTCACCTGTCCTCCCTCCTGCGTTGTATAGGTCAGAGTGGATGTCTGGCTGGCCCGGGCCCCTGTGATACTTGACTTTCTGTAGCATCCCACCACAATCATGTGACAACCAGAGGCACTGTCCAGTCAACAAGTGCCTTTGTGGGactgtgtgtttgagtgtttaTGCTCTGTTTGTGAGTTTTATTTGCAGTGTTGTAACTGCCTTGACATTTCTGAAAATAAAGCCAATGAATCTAATGCAACGATA

Function

NR:

description
testis-expressed protein 26

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944383.1 False 1205 mRNA 0.53 7 42039954 42054610
XM_021563237.2 True 1368 mRNA 0.51 8 42048599 42054610

Neighbor

gene id symbol gene type direction distance location
LOC118938919 NA coding upstream 16628 42019476 ~ 42023326 (+)
LOC110490081 LOC106580643 coding upstream 88122 41925174 ~ 41951832 (+)
iqcg iqcg coding upstream 203824 41810243 ~ 41836130 (+)
LOC110490072 LOC106612410 coding upstream 414914 41588463 ~ 41625040 (+)
LOC110490073 NA coding upstream 451834 41583335 ~ 41588120 (+)
LOC110490086 LOC106612440 coding downstream 99681 42154291 ~ 42255013 (+)
trnaa-ugc-68 NA coding downstream 267436 42322046 ~ 42322117 (+)
trnat-ugu-37 NA coding downstream 268934 42323544 ~ 42323615 (+)
trnaa-ugc-69 NA coding downstream 269856 42324466 ~ 42324537 (+)
trnaa-ugc-70 NA coding downstream 270778 42325388 ~ 42325459 (+)
G1293597 NA non-coding upstream 36367 42003378 ~ 42003587 (+)
G1293315 NA non-coding upstream 91586 41947314 ~ 41948368 (+)
G1293261 NA non-coding upstream 173229 41862216 ~ 41866725 (+)
G1293224 LOC106612432 non-coding upstream 229782 41805689 ~ 41810172 (+)
G1293174 NA non-coding upstream 290261 41740346 ~ 41749693 (+)
G1293637 NA non-coding downstream 15050 42069660 ~ 42069949 (+)
G1293769 NA non-coding downstream 146820 42201430 ~ 42201903 (+)
G1293798 NA non-coding downstream 202258 42256868 ~ 42257165 (+)
G1293974 NA non-coding downstream 249687 42304297 ~ 42304553 (+)
G1293979 NA non-coding downstream 266981 42321591 ~ 42323337 (+)
G1293295 NA other upstream 130343 41909034 ~ 41909611 (+)
G1293072 NA other upstream 451810 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 1909220 40089464 ~ 40132600 (+)
G1291464 NA other upstream 1972047 40067558 ~ 40067907 (+)
G1290614 NA other upstream 2912945 39126272 ~ 39127009 (+)
G1294319 NA other downstream 710243 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 1542314 43596924 ~ 43597464 (+)
G1295730 NA other downstream 1861568 43916178 ~ 43916479 (+)
G1295845 NA other downstream 1974826 44029436 ~ 44029861 (+)
cblb cblb other downstream 2266893 44173352 ~ 44326246 (+)

Expression


Co-expression Network