LOC110490084 (LOC106612439)


Basic Information

Item Value
gene id LOC110490084
gene name LOC106612439
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42041099 ~ 42043969 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563236.2
GGAAGCAAAACTGTAGGAGCAGTCGAAACCGTGCTTCTAGACCGGAACCCTGGCCACTTGACTAAAACCCCACTGAAGAAGATTTACATTTGTATGTTTAGAAATGcgtgcttttattttgaagaattcTTCATTACCATACGAGAGTGACGTCATTGTTTGCGCTACTAGCGAATATTAATCATCGTCCCATTGTTGTTTGATGAAGCATAACGTTAGCTGGTTAGCTAACTGAGGACCTACACAAGTCACCATGGGGAAAGATCCTAGGAAGCCGAGAGGCAAGATGTCCTCATATGCTTACTTCGTGCAGACCTGCAGGGCGGAGCACAAGAAGAAACAGCCCGAAGCCAGCGTCAACTTCGCCGAGTTCTCCAAGAAATGCTCAGAGCGATGGAAGCCCATGTCTCCTAAAGAAAAAGGAACGTTTGAGGACATGGCAAAGCAAGACAAGGTCCGCTACGAGAGAGAAATGAAGAACTACATCCCACCCAATGGCCAGAAAAAGAAGAGGTTTAAGGATCCCAATGCCCCCAAGAGACCGCCGTCTGCGTTCTTCATCTTCTGTGCTGACTTCCGGGCCAAGATAAAGAGCGAGCACCCAGGCCTGTCCATTGGAGACACTGCTAAGAAGCTGGGAGTGATGTGGAACAGCTCTGCAGCTGAGGAGAAGAAGCCGTACGAGAAGAAGGCAGCCACGCTGAAGGAGAAATACGACAAGGATATTGCATCATACCGCACCAATGGTAGAGTGGATACTGCCTCCTCCGCAGCTGCTGATGACGACGACGATGAAGATGATGAGGAGGATGACGATGAGGATGATGACGAGTAGCCTCCCTGCTGTTGGAGGCTACATTCTTGTTTAACGCTATGTAACCCTATTGTACACACTTTACATCTCCGAACAGACCCAGACACAACGAGAACACATTAAGCTGTGTGTATATTTAATGTTTTAATGCTCCCTAACCGGTTAAAGGTAACACTACATGTCTTGTTTTTGTTCTTGTAGTAGCCCTTTTTTCCTGCCCATGCCTGTAACTGCTTTGGCAGATTATAAATCACAATGGAAGTAATAACTTTCCTTTAGGTGTGCAACTCTCAAATCAGATTTCTGGGTTGGTAGCGAGTGAATTATGTTTTTTCTGTATTTGTTTTAAAGGATATTTTTTCATATGTTTGTCACACGGTCTTTGTATTGTTCTTTGAATACCACTCTGATAACAAATGCAGCTGACATTCAGGAATGTCTTAAATAAAGGTCTTTTTTAATAAA

Function

NR:

description
PREDICTED: high mobility group-T protein-like isoform X1

GO: NA

KEGG:

id description
K09273 UBTF; upstream-binding transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563236.2 True 1279 mRNA 0.44 5 42041099 42043969

Neighbor

gene id symbol gene type direction distance location
LOC110490083 LOC106612434 coding downstream 38603 41951959 ~ 42002496 (-)
LOC110490082 lrch3 coding downstream 121956 41840220 ~ 41919143 (-)
LOC110490080 LOC106612432 coding downstream 230848 41805655 ~ 41810251 (-)
LOC110490078 NA coding downstream 241838 41790928 ~ 41799261 (-)
LOC110490076 LOC106612406 coding downstream 272241 41722950 ~ 41768858 (-)
LOC118938956 NA coding upstream 347818 42391787 ~ 42391940 (-)
LOC118938920 NA coding upstream 421885 42465854 ~ 42468333 (-)
asl asl coding upstream 438263 42482232 ~ 42498054 (-)
LOC118938801 LOC106602806 coding upstream 516703 42560672 ~ 42562301 (-)
pcf11 pcf11 coding upstream 603000 42646969 ~ 42677696 (-)
G1293561 LOC106612436 non-coding downstream 90831 41946185 ~ 41950268 (-)
G1293533 NA non-coding downstream 153115 41887480 ~ 41887984 (-)
G1293494 NA non-coding downstream 258161 41781693 ~ 41782938 (-)
LOC110490074 LOC106580655 non-coding downstream 413791 41625005 ~ 41648672 (-)
G1293934 NA non-coding upstream 212884 42256853 ~ 42257388 (-)
G1293950 NA non-coding upstream 229378 42273347 ~ 42274128 (-)
G1294111 NA non-coding upstream 257009 42300978 ~ 42301427 (-)
G1294131 NA non-coding upstream 277926 42321895 ~ 42341557 (-)
G1294145 NA non-coding upstream 319731 42363700 ~ 42367260 (-)
G1293364 NA other downstream 450085 41590707 ~ 41591014 (-)
G1292622 LOC108238713 other downstream 1041076 40999493 ~ 41000023 (-)
G1291781 NA other downstream 1953331 40086770 ~ 40087768 (-)
G1293933 NA other upstream 211745 42255714 ~ 42256117 (-)
G1295948 LOC106602830 other upstream 1961492 44005461 ~ 44024575 (-)
G1296025 NA other upstream 2095304 44139273 ~ 44140428 (-)
G1297069 NA other upstream 2817435 44861404 ~ 44876770 (-)
G1297112 NA other upstream 2905411 44949380 ~ 44954909 (-)

Expression


Co-expression Network