LOC110490086 (LOC106612440)


Basic Information

Item Value
gene id LOC110490086
gene name LOC106612440
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42154291 ~ 42255013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563239.2
GTGCAGCATTTGGCCACAAGAGCGCGAGCCTGAGCCACACCAGATGAGGGGAAGGTGACAACATTCGCGTGCCTTTTAGTCCGAAAGATTGTGGGTAAAGTAAAACATTCCATTCCAAACACTGTCAAAGCCACACCGGAGGCTGTCAACAGCTTACTTCCACACACTTCAGCATCTCTCCGTCTTGCACGATGATCCCCGACAACCAAGATATCAGACACACAGTtggtttttatttcatttttctgTTGTTCGTTCCTGTCAACATTGTCATCGGCAGCACAAGACCAGGCTCCCAGaacCAGGATTCAGAGGAAGTCCTCTATGACAGCCAGCTAGACCTGCGAGAGATAGTATTTGTGATCCAGAGCCAGAGTAACTCATTCCACATGAGTtgggcggagagacagagagcagacctgTTACAACAGACTCAGAGCCTCACACAGACACCCCCTCCAGTCCTGCTCCTCCACAGTCTGACAGACAATGAGGGAGACTGGAGCATCCTTCCTCTGCTGCCTTACCTCTCCTCGTTGTTTGGGAAGAACTCATCCTGGTTGGTGTTTCTGGAAGAGGAAACTAACGTCAAGGTGACCAAGCTGCTCCAGGCCCTCAGGAAGTTTGACAGGAGAAAAGAGTGGTTCCTGGGTAAACCTCTCCATGACGAGGAGTCGACCATCATCCACCACTACGCCTTTGCAGAGAACCCCTCCATCTTTAAATACCCAGACTTCTCTGCTGCCTGGGCCCTTAGCATCCCCCTGCTTGACAGGCTCGCAAACAAAGTGAGAGATGATCCACTCAAGTCTGACTTCACTATCGATCTGAAGCATGAGGGGGAGCCTGTAAAGAAGGAAGACATCTTTGTTGCTGTGAAAACTTGCAAGAAGTTTCATAGCGAGAGAGTCCCAGTGGTGAAGAAGacgtgggagagagaggcatCTCTGTTGGAGTATTACAGTGACCACACTGACCCCTCCATACCTACCATTGACCTAGGAGTccccaacacagagagagGTCATTGTGGGAAGACGTTTGCCATCTTGGAGAGGTATATCAGCGATGCGGTGCCAAAGACGAGTTGGCTGCTGGTGGTGGATGATGACACACTCATCAGCCTGCCCAGACTGCAGATGCTGTTGAGCTGTTACAACCCCTCTGAACCGGTGTGTCTAGGGGAGAGGTACGGCTACGGGCTGGGCCAGGGAGGCTACAGCTACATCACCGGAGGAGGGGGGATGGTGTTCAGTAGGGCAGCGGTAGTGAGGCTCCTGGCCAGTGACTGCAAGTGTTACCGTGATGACGCCCCTGATGACATGGTGCTGGGGATGTGTCTCAACGCTCTGGGGCTCCCTGTCACACATAGCTCCCTCTTCCACCAGGCACGACCTGAAGACTACTCCAGAGACTTCCTAGCCCACCAGGTGCCCATCTCTTTCCACAAACACTGGAACATCGACCCCGTCGCCGTCTTCAACAGGTGGCTAAAGGATGAGTCGATGTCAACAAGCACACACGGACTAAACAAGAGCACCAAGGAAGAGTTATAGTCACTCagacactatgtgtgtgtgtgtgtgtgtcatggacAAACATATTGTCAGCATGTTTCCTCCATCGGTGTAAATGTTTTCTATATTGTGAATCTTGCGGAGATATCATTTGGAAGGTTCATGCAAGCCTGTCCCTGACTGTGTATATGGGAACTTATTCATGACTGAGGCCAGGATTCAATCCAAGGCGCGTTAGAGCAGCGCAATATAATGGACTTTCAAAGGTAAATGATGCTTGAGTCGACATGCTAGCATTGACCATGAATGCGATCTCGGCGAACGCCGGGGAAAACGTCTTTGGATAACATATTGTCGGCTGTCTAACGCTCAGCTATACATATTGAATCCCGGCCACAGTTTCAATTGATTTGCATGTTGAGGTTGTCAGTGTGTGTTCAGATCTTGTCTGTGTATATTTATATGATATAATCTATTCCTTGCCAAGTTGAACAgtgaaactgttttttttttttttctcaaggaCATATTACTTATTACATTATTACTACATGCTGTACAATGTGTACTATTTTGATATCAAAGTGTTATTACttaaaaatatatgtttgagCTGTCTTATTGGAGTTTTATTTCTGGCATTTGGTTTCAGGATTAATTAATGACTATTAATTGTGAATGTAAATAATAGGGGCTATGAAaacatgtgtgtgttttcattgCCCCTATTATCACACACACCAAATACTGTTGAATGCAATTTCAAATAGAAGCTATGAGAAATGA
>XM_021563238.2
TGCAGCATTTGGCCACAAGAGCGCGAGCCTGAGCCACACCAGATGAGGGGAAGGTGACAACATTCGCGTGCCTTTTAGTCCGAAAGATTGTGGGTAAAGTAAAACATTCCATTCCAAACACTGTCAAAGCCACACCGGAGGCTGTCAACAGCTTACTTCCACACACTTCAGCATCTCTCCGTCTTGCACGATGATCCCCGACAACCAAGATATCAGACACACAGTtggtttttatttcatttttctgTTGTTCGTTCCTGTCAACATTGTCATCGGCAGCACAAGACCAGGCTCCCAGaacCAGGATTCAGAGGAAGTCCTCTATGACAGCCAGCTAGACCTGCGAGAGATAGTATTTGTGATCCAGAGCCAGAGTAACTCATTCCACATGAGTtgggcggagagacagagagcagacctgTTACAACAGACTCAGAGCCTCACACAGACACCCCCTCCAGTCCTGCTCCTCCACAGTCTGACAGACAATGAGGGAGACTGGAGCATCCTTCCTCTGCTGCCTTACCTCTCCTCGTTGTTTGGGAAGAACTCATCCTGGTTGGTGTTTCTGGAAGAGGAAACTAACGTCAAGGTGACCAAGCTGCTCCAGGCCCTCAGGAAGTTTGACAGGAGAAAAGAGTGGTTCCTGGGTAAACCTCTCCATGACGAGGAGTCGACCATCATCCACCACTACGCCTTTGCAGAGAACCCCTCCATCTTTAAATACCCAGACTTCTCTGCTGCCTGGGCCCTTAGCATCCCCCTGCTTGACAGGCTCGCAAACAAAGTGAGAGATGATCCACTCAAGTCTGACTTCACTATCGATCTGAAGCATGAGGTAGCTCTGTATATCTGGGAGAATGGCCAAGGGCCTCGTCTGACGGCAGTCCCAGAGCTGTGTACTGAGCCAGAACACTCTCCCACTGCCCAACACTGTGCTACCACGCTCAGGAGACCTGCTCCTCTGTGTGGGGAGCCTGTAAAGAAGGAAGACATCTTTGTTGCTGTGAAAACTTGCAAGAAGTTTCATAGCGAGAGAGTCCCAGTGGTGAAGAAGacgtgggagagagaggcatCTCTGTTGGAGTATTACAGTGACCACACTGACCCCTCCATACCTACCATTGACCTAGGAGTccccaacacagagagagGTCATTGTGGGAAGACGTTTGCCATCTTGGAGAGGTATATCAGCGATGCGGTGCCAAAGACGAGTTGGCTGCTGGTGGTGGATGATGACACACTCATCAGCCTGCCCAGACTGCAGATGCTGTTGAGCTGTTACAACCCCTCTGAACCGGTGTGTCTAGGGGAGAGGTACGGCTACGGGCTGGGCCAGGGAGGCTACAGCTACATCACCGGAGGAGGGGGGATGGTGTTCAGTAGGGCAGCGGTAGTGAGGCTCCTGGCCAGTGACTGCAAGTGTTACCGTGATGACGCCCCTGATGACATGGTGCTGGGGATGTGTCTCAACGCTCTGGGGCTCCCTGTCACACATAGCTCCCTCTTCCACCAGGCACGACCTGAAGACTACTCCAGAGACTTCCTAGCCCACCAGGTGCCCATCTCTTTCCACAAACACTGGAACATCGACCCCGTCGCCGTCTTCAACAGGTGGCTAAAGGATGAGTCGATGTCAACAAGCACACACGGACTAAACAAGAGCACCAAGGAAGAGTTATAGTCACTCagacactatgtgtgtgtgtgtgtgtgtcatggacAAACATATTGTCAGCATGTTTCCTCCATCGGTGTAAATGTTTTCTATATTGTGAATCTTGCGGAGATATCATTTGGAAGGTTCATGCAAGCCTGTCCCTGACTGTGTATATGGGAACTTATTCATGACTGAGGCCAGGATTCAATCCAAGGCGCGTTAGAGCAGCGCAATATAATGGACTTTCAAAGGTAAATGATGCTTGAGTCGACATGCTAGCATTGACCATGAATGCGATCTCGGCGAACGCCGGGGAAAACGTCTTTGGATAACATATTGTCGGCTGTCTAACGCTCAGCTATACATATTGAATCCCGGCCACAGTTTCAATTGATTTGCATGTTGAGGTTGTCAGTGTGTGTTCAGATCTTGTCTGTGTATATTTATATGATATAATCTATTCCTTGCCAAGTTGAACAgtgaaactgttttttttttttttctcaaggaCATATTACTTATTACATTATTACTACATGCTGTACAATGTGTACTATTTTGATATCAAAGTGTTATTACttaaaaatatatgtttgagCTGTCTTATTGGAGTTTTATTTCTGGCATTTGGTTTCAGGATTAATTAATGACTATTAATTGTGAATGTAAATAATAGGGGCTATGAAaacatgtgtgtgttttcattgCCCCTATTATCACACACACCAAATACTGTTGAATGCAATTTCAAATAGAAGCTATGAGAAATGA

Function

NR:

description
beta-1,3-glucosyltransferase-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K13675 B3GALTL; UDP-glucose:O-linked fucose beta-1,3-glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563239.2 False 2303 mRNA 0.47 14 42154291 42255013
XM_021563238.2 True 2434 mRNA 0.48 15 42154292 42255013

Neighbor

gene id symbol gene type direction distance location
LOC110490085 LOC106612498 coding upstream 99681 42039954 ~ 42054610 (+)
LOC118938919 NA coding upstream 130965 42019476 ~ 42023326 (+)
LOC110490081 LOC106580643 coding upstream 202459 41925174 ~ 41951832 (+)
iqcg iqcg coding upstream 318161 41810243 ~ 41836130 (+)
LOC110490072 LOC106612410 coding upstream 529251 41588463 ~ 41625040 (+)
trnaa-ugc-68 NA coding downstream 67033 42322046 ~ 42322117 (+)
trnat-ugu-37 NA coding downstream 68531 42323544 ~ 42323615 (+)
trnaa-ugc-69 NA coding downstream 69453 42324466 ~ 42324537 (+)
trnaa-ugc-70 NA coding downstream 70375 42325388 ~ 42325459 (+)
trnaa-ugc-71 NA coding downstream 71298 42326311 ~ 42326382 (+)
G1293637 NA non-coding upstream 84342 42069660 ~ 42069949 (+)
G1293603 NA non-coding upstream 103483 42009531 ~ 42050808 (+)
G1293626 LOC106612439 non-coding upstream 111465 42041113 ~ 42042826 (+)
G1293597 NA non-coding upstream 150704 42003378 ~ 42003587 (+)
G1293315 NA non-coding upstream 205923 41947314 ~ 41948368 (+)
G1293798 NA non-coding downstream 1855 42256868 ~ 42257165 (+)
G1293974 NA non-coding downstream 49284 42304297 ~ 42304553 (+)
G1293979 NA non-coding downstream 66578 42321591 ~ 42323337 (+)
trnaa-ugc-118 NA non-coding downstream 116792 42371805 ~ 42383605 (+)
G1294052 NA non-coding downstream 194462 42449475 ~ 42449737 (+)
G1293295 NA other upstream 244680 41909034 ~ 41909611 (+)
G1293072 NA other upstream 566147 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 2023557 40089464 ~ 40132600 (+)
G1291464 NA other upstream 2086384 40067558 ~ 40067907 (+)
G1290614 NA other upstream 3027282 39126272 ~ 39127009 (+)
G1294319 NA other downstream 509840 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 1341911 43596924 ~ 43597464 (+)
G1295730 NA other downstream 1661165 43916178 ~ 43916479 (+)
G1295845 NA other downstream 1774423 44029436 ~ 44029861 (+)
cblb cblb other downstream 2066490 44173352 ~ 44326246 (+)

Expression


Co-expression Network