LOC110490091 (crcp)


Basic Information

Item Value
gene id LOC110490091
gene name crcp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42509769 ~ 42513637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944384.1
ACTAATTTTATCAGCAAACATGTTTCCAGACGGATTAAATTGGCAAAGGATCAAGCTAGAGTTGCTGGCAAAATGGAAGTGAAGGATGCCAATGCTGCTATGCTCAGCAACTACGAGGTGTACCAGCTCCTGACAGATCTGAAGGAACAGAGAAAGGACAGTGGGAAGAACAAACACAGCGCTGGACAACAGAACCTCAACACCATCATGTACGAGACGCTGAAGTACCTGTCCAAGACTCCGTGCAGCAGGCAGAACCCAGAGACTGTCAAGAACTTCCTTACCACCATGGTGCCTCACAAACTCACTAAGGCTGAGAAGCTACAGCTACTGAACCACAGACCAGAGACTGCTGTAGAGATCCAACTGatggtagAGGAGAGTGAGGAGCGGTTATCAGAGGAGCAGATTGAGGAGCTCATTCAGAAGGTCACAGACGTGCTCCCAGGCGACCCAGAACAAGAAGGCTCTACCCCCAGCAATGAAGCAGAGATGGAAGAGGGCATTGACCAATAGCCACGAGTCCTGATGGAGCTTGTCTGTTACTGAGGGAGGGAGCCTAAGCTGAACAGGAGTCAAAATGGTATAAAGAAAACACTGGAAATCCACTTTCATGCTCCTTTGGGTGCTCTGGAATGGACATGGAAGTATGCAGAATGGAATACAGTCAGATATTACCATTGACAGTAACAAGACTGTTCCCATTCTTCTGTGCATTACTAACCTACCTGTCTGCTTGGTTCAACTTCAGCTCTTAGTCCTTCTGTGTTTACAGCACTGTTTCTTAACTAGTGTGTTCTGGAATCCACTTGCACTTACAGAAGATAGTGTTAGTGATCTCCTGTCCTACATGCTTTCATATAGTTAGCAGATTACAACGGGCTAATGTGAAGCTCCATTAACCATTACAGGTTAGGTACTGTTTGCGGCGTATCACAGAATTTCCGACCAACCTTGGTGACACTTACTCAATTTCCGACTTGGAAAACAACCAATGTCTTCCTAAACGCCAATGTCTAGTTGCAAGGGCTTTGTTTTTTAATTTAGAAAATGCTCTGTTATTAAATAAATTCTTTGCTCCATGAAGTAATCCAAAAATGTGTACGCcgccatcttgtctatttcaagtCTTCTCACTCATTGATCGAGACAGGTGAGTGTCATCATGACATGCAGCACTTTGTGGTGGAGACCTACCTCTCTTGATCAATGAGAGAAGATTTTAAATGGTTAAGATGGCGACgtacacattgttggattacttcatgGAGCAGAACTTTTATTTCATTGAAAAACCGATTTTCTAAATTAAATTATGAACTGATGGTTCGAGGCCTGAATGCTGTgctattttactaggcaagtcggttaagaacaaattcttattttcaatgactgcctaggaacagtgggttaactgccttgttcaggggcagaacgacagatttgtaccttgtcagttcgggattcgatctagcacctttcggttactagtccaacgctctaaccaccaggctacgctgccgccccgaccatataccatgggtatgacaacgttaaatttttactgttctaattacgttggtaaccagtttatcaTAGCAATAAGACACCTCGTGGGTTTATGGTATgtgggctgtatccaggcactctgcgttgcgcataagaacagcccttagccatggtatattggccatataccacaccccctcttgccttattgcttaaacgaACCCCTGCAACTAGACATGGATGTTTATAAGACATTGATTGTCTTCCAAGTTGGGAATTTTAGACGTATCGATCGTCTGGCTAAGGTTGGTTGAAAATTCTCTGTTACACCAAACAGTACCTATCAGCCAGCTGGAACAGAGTAATGGTCTGACGAGGAAATATTTGTAATAACTAGCTTTCATAGTACAGTGAATGGAACATACCTAGACAGAAGCACACGCTTGGTGTgttcagagagaacagtcagggatcacagttttgacagcaccCACACTGTCCTCTACAGAGCACTGTTGCTTTCAGATGCCATAAAATGGGGTAGAAGGTAgacttgttttgtattttgtttgaCATAACCATACATTGGATAAATATACTTGTTTCTTTGTAAATCCATTTGCCTAATAAAATCAAAGGCATACAGTA
>XM_036944385.1
GCAAAATGGAAGTGTAAGCATTTTCTGACCATTTATTTCAACGACATAGATTTATGTTAAAATGGTCTAACTGTTGTGCGTAGTTGTTGTCTTGTGAAATAAATAGCTAGCTTTTCCTGTAAATACTCAGCAGTGCACGCAACAAACGGTGATTATAAAACAAAGATGATAGCTAGACCTACATCTTATTGCCTGGATGCCTTGTGCCTGATCATGACgagtatggaatcatgtattttTTCAGCTAAATAACCAGAGAAGGATGCCAATGCTGCTATGCTCAGCAACTACGAGGTGTACCAGCTCCTGACAGATCTGAAGGAACAGAGAAAGGACAGTGGGAAGAACAAACACAGCGCTGGACAACAGAACCTCAACACCATCATGTACGAGACGCTGAAGTACCTGTCCAAGACTCCGTGCAGCAGGCAGAACCCAGAGACTGTCAAGAACTTCCTTACCACCATGGTGCCTCACAAACTCACTAAGGCTGAGAAGCTACAGCTACTGAACCACAGACCAGAGACTGCTGTAGAGATCCAACTGatggtagAGGAGAGTGAGGAGCGGTTATCAGAGGAGCAGATTGAGGAGCTCATTCAGAAGGTCACAGACGTGCTCCCAGGCGACCCAGAACAAGAAGGCTCTACCCCCAGCAATGAAGCAGAGATGGAAGAGGGCATTGACCAATAGCCACGAGTCCTGATGGAGCTTGTCTGTTACTGAGGGAGGGAGCCTAAGCTGAACAGGAGTCAAAATGGTATAAAGAAAACACTGGAAATCCACTTTCATGCTCCTTTGGGTGCTCTGGAATGGACATGGAAGTATGCAGAATGGAATACAGTCAGATATTACCATTGACAGTAACAAGACTGTTCCCATTCTTCTGTGCATTACTAACCTACCTGTCTGCTTGGTTCAACTTCAGCTCTTAGTCCTTCTGTGTTTACAGCACTGTTTCTTAACTAGTGTGTTCTGGAATCCACTTGCACTTACAGAAGATAGTGTTAGTGATCTCCTGTCCTACATGCTTTCATATAGTTAGCAGATTACAACGGGCTAATGTGAAGCTCCATTAACCATTACAGGTTAGGTACTGTTTGCGGCGTATCACAGAATTTCCGACCAACCTTGGTGACACTTACTCAATTTCCGACTTGGAAAACAACCAATGTCTTCCTAAACGCCAATGTCTAGTTGCAAGGGCTTTGTTTTTTAATTTAGAAAATGCTCTGTTATTAAATAAATTCTTTGCTCCATGAAGTAATCCAAAAATGTGTACGCcgccatcttgtctatttcaagtCTTCTCACTCATTGATCGAGACAGGTGAGTGTCATCATGACATGCAGCACTTTGTGGTGGAGACCTACCTCTCTTGATCAATGAGAGAAGATTTTAAATGGTTAAGATGGCGACgtacacattgttggattacttcatgGAGCAGAACTTTTATTTCATTGAAAAACCGATTTTCTAAATTAAATTATGAACTGATGGTTCGAGGCCTGAATGCTGTgctattttactaggcaagtcggttaagaacaaattcttattttcaatgactgcctaggaacagtgggttaactgccttgttcaggggcagaacgacagatttgtaccttgtcagttcgggattcgatctagcacctttcggttactagtccaacgctctaaccaccaggctacgctgccgccccgaccatataccatgggtatgacaacgttaaatttttactgttctaattacgttggtaaccagtttatcaTAGCAATAAGACACCTCGTGGGTTTATGGTATgtgggctgtatccaggcactctgcgttgcgcataagaacagcccttagccatggtatattggccatataccacaccccctcttgccttattgcttaaacgaACCCCTGCAACTAGACATGGATGTTTATAAGACATTGATTGTCTTCCAAGTTGGGAATTTTAGACGTATCGATCGTCTGGCTAAGGTTGGTTGAAAATTCTCTGTTACACCAAACAGTACCTATCAGCCAGCTGGAACAGAGTAATGGTCTGACGAGGAAATATTTGTAATAACTAGCTTTCATAGTACAGTGAATGGAACATACCTAGACAGAAGCACACGCTTGGTGTgttcagagagaacagtcagggatcacagttttgacagcaccCACACTGTCCTCTACAGAGCACTGTTGCTTTCAGATGCCATAAAATGGGGTAGAAGGTAgacttgttttgtattttgtttgaCATAACCATACATTGGATAAATATACTTGTTTCTTTGTAAATCCATTTGCCTAATAAAATCAAAGGCATACAGTA

Function

symbol description
crcp Predicted to enable DNA-directed 5'-3' RNA polymerase activity and nucleotide binding activity. Acts upstream of or within hematopoietic stem cell homeostasis. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Is expressed in blastomere and hematopoietic system. Orthologous to human CRCP (CGRP receptor component).

NR:

description
DNA-directed RNA polymerase III subunit RPC9 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944384.1 False 2160 mRNA 0.43 6 42509769 42513637
XM_036944385.1 True 2337 mRNA 0.43 6 42509836 42513637

Neighbor

gene id symbol gene type direction distance location
LOC110490089 zpld1 coding upstream 65730 42398093 ~ 42444039 (+)
trnaa-ugc-120 NA coding upstream 135645 42374053 ~ 42374124 (+)
trnaa-ugc-119 NA coding upstream 136567 42373131 ~ 42373202 (+)
trnaa-ugc-118 NA coding upstream 137487 42371805 ~ 42383605 (+)
trnaa-ugc-117 NA coding upstream 138408 42371290 ~ 42371361 (+)
tpst1l tpst1 coding downstream 14867 42528504 ~ 42545974 (+)
ncbp3 ncbp3 coding downstream 91670 42605307 ~ 42624228 (+)
alg8 alg8 coding downstream 183078 42696715 ~ 42725617 (+)
guca1d LOC106602844 coding downstream 223991 42737628 ~ 42759052 (+)
trnaa-cgc-2 NA coding downstream 368122 42881759 ~ 42881830 (+)
G1294052 NA non-coding upstream 60032 42449475 ~ 42449737 (+)
G1293979 NA non-coding upstream 186432 42321591 ~ 42323337 (+)
G1293974 NA non-coding upstream 205216 42304297 ~ 42304553 (+)
G1293798 NA non-coding upstream 252604 42256868 ~ 42257165 (+)
G1294276 NA non-coding downstream 43753 42557390 ~ 42568776 (+)
G1294336 NA non-coding downstream 131377 42645014 ~ 42645230 (+)
G1294325 NA non-coding downstream 169987 42683624 ~ 42684414 (+)
G1294362 NA non-coding downstream 220654 42734291 ~ 42734604 (+)
G1294322 NA non-coding downstream 255858 42769495 ~ 42770500 (+)
G1293295 NA other upstream 600158 41909034 ~ 41909611 (+)
G1293072 NA other upstream 921625 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 2379035 40089464 ~ 40132600 (+)
G1291464 NA other upstream 2441862 40067558 ~ 40067907 (+)
G1290614 NA other upstream 3382760 39126272 ~ 39127009 (+)
G1294319 NA other downstream 251216 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 1083287 43596924 ~ 43597464 (+)
G1295730 NA other downstream 1402541 43916178 ~ 43916479 (+)
G1295845 NA other downstream 1515799 44029436 ~ 44029861 (+)
cblb cblb other downstream 1807866 44173352 ~ 44326246 (+)

Expression


Co-expression Network