ncbp3 (ncbp3)


Basic Information

Item Value
gene id ncbp3
gene name ncbp3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42605307 ~ 42624228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944389.1
CACTCTCACTAAAATTAGGCACCAGGCGTGTCCGTACAGCCTTTCCCTGCACACTCACGTCTTCCTGCTTCGAAAGCGTTTGCGGACGGAGTGCTAGGACCATGGCGGCAGTGCGCAGTCTACGGGTGTCGGTAAAGCCAGACAGTGGGCCAGACCACTCAGAATCGGACTCGGATTCAGACTCGGACCGAGGTGCCCGTGAATCTGAAccgatggaggtggaggagggtgaACTCGAGGTGGAAAACATCCCCGTTAACCGGTCTTTGAAGGAATTGTTGCCGGACACAAGTCGGCGGTATGAGAACAAAGCTGGCACATTCATCACTGGAATCGATGTCACATCAAAGgaGGCGattgagaggaaggagaagagagcgGAAAGGTTCCACTTCCGTGCAGAGGCCAACCTGGCCCAGAAGAATGTGGTGTTGGACAGAGAAACCATGAAGAAAGCCATCCCTAACTTGCGCCTGGAGGCGTTGCACGTGGCGGGTGTTGATGATATGAGCACCCAGGATGTGTTTGGCTACTTTAAGGAGTACCCTCCAGCACACATCGAGTGGATTGACGACACCTCCtGTAATGTGGTGTGGCTGGATGATGTCACTTCCACCCGGGCTCTGATCAACATCAGCCGCATGCCTGACCCAGAGGGGGTTACCACGGAGACAGACCGCACCAAAGAACCTGGTGATCCCACCCAGGAGAGCAAGGCTCGCAGAGAACAAGGCTCGGATGACGATGATGGAGAGGTGgatgaggaggggaaagagatggTGAAGGAGAATGAGGGGAAAGCCTGCGAGGTAGACACAGAGAAGAAAACAGAACCAGAGACCACCCAGGTAAAACTGTGTTCAagactgtgggtgtgtggggaAATGTTGCATATTAgttacctgtgtgtttgtgtgtgtgcatttgaggTGGACCTGCTGTCTCAGGCAGAGAGTGAGTCTCTGCTCCGGAATGACCTACGACCGGCCATCAAACCCTTCAAGGGCAACAAACTCTTCCTGAGGTTGGCCACTCACGGTGATAAGAAGGAGCTGGGTGCTGCGAGGAAGAGCAGATATTACATGAAGTACGGCAACCCGAACTACGGAGGCATGAGGGGCATCCTCAGCAACTCCTGGAAGAGACGGTATCACACGCGCAGAATCGTGAGCAAGAGCAAGAAACCCCTGATAGGGGACAGCATGGGGGACACATCACcctacacacatagacactctgCTGACCTGGTCAACCTACCAGAAGAACcaatagaggaagaggaggaggaggatgaggaagaggaggacatggACTCAGACGACAGGGTGGTGGAGtacaaggagaaggagaaggagaagagggagagggggggaggtccAGGGGTGGCCCTGCGGAGTCGTTTGGGCAggccctcctcttccccctctgtcTCGTCAGACTCAGACGAAATGGACTATGACTTGGAGCTCAAGATGATCTCAACCCCCTCTCCCAAGAAGAGCATGAAGATGACCATGTATGCAGACGAGGTGGAGACCAACCTCAAGACTATACGACACTCTTCTGTTCGCAGTGACAGCGGCTTGGGGGGTAGTGGTGTCCGGAACAggattggtggaggaggaggaagtggaggatcAGTAGGCGGGACCAAAAGCAGTGCAGTGGAGAAAGTGATGGATGTGAGGCAGCTATTGGAGGAAAAAAGACAGAGCCTCACCCAGCATAGACAGCGCACCCCTGTGGCCAGTAGTGGAAAGACAGatgtgaGGCAGAGGTTAGGGAAGAGACCCTACTCTCCTGAGAGACGACACTCCGCCTCCCCTGTCGCCTCCCGAGACTCACCCCCTCCCCGAGAGCCAATCACAGATGTGCACAGCCGACTGGGCATGGCCAAACTAGACTCCCGCGGCCTCTACTCTGATTCGTCCAAAGACAGGAAATCAAGTCGTCTGTGGAGCAGGCTCGGCCCCTCCTCCCATAAGGGTGGTGTTCCCGAGCGGAAGCCTTCCAGTCGCCGTGCGGGGTCTGGATCAGCCAGCTCCAGGTTGGGGGGGCgggaaggagaagaggaaaaTGAGGAGGAGGACGACTCTGCACTGCAGAAGGTGTGGGGGGCCTTGATCAAACAGAAGGAACAGCAGACCCACAAAATGAAGAAGAGTCGGCTTGACAACCTGCCCTCGCTACAGATTGAGATCAGCCGGGAGAGCAGTAACGGATCTGACTCAGACTCCTGAGAccgagggggagaaagaaagagcgggAGATGTGTGGATTTGGTCATGCCTTCATCTAGAGCTGAAAGGTGATCATCCACCCTCGCCCTCCTCTTGAGTTACCTTTCTTTCTCAGTGTCTGGAGGACTCTTGATCCTTGGGCCCCTGTCGCTGTGGCCTGATCCATCGTACAAACATAAAAGAAAAGACTCTTTTATAAagagaaatgagaaaataaaCTGGACAGAATTTTTTTGAAAGACTGAGACGTTCTGTTTCAGGACAGGAGGccattttgtttttgtattaCATTATCTCTGCGGCACATGGGACTGTTGTTCTGATCAAACCTGTTCCCATGACATTTCACCCTCTGATAGCCTACCTACATgtcaagtcatgtccaatcattaATGAGCAATATAAATGTCTCAATAACCTCCTGTGAAGTCGACTACAGAAGAACTGTGACAGAGTAAGAGGCAGATACTGAGCTTGCTccgtctgtttctctgtgtgtggaacCAGACACTGTATCATATGTGGTATCTGTGTGAGTGACTATGAACAACAAATATATGGTTTGTGGCATTTTTTTTTCCTTCCAAAGGCTGAGGCCATAGAGAAGACCACCAGATGAATTGATTCTCAACTGAAAGGTTTTGTACTTTGACTGTTGGTATTATGTGCAAATGGCCAATGTTGACCATATTATGTTATTCAAGGCGGAAGAGCGTGCGTgccaaatggaaccatattccatatgtagtacactacttttgaccagggccttaaaagtagtgcactatgtagggaatagggtgccatttgatatgTACACCTACATTCCCAGATGGAAAACAAATTGATTTAAGGTGTCAGCAGAAATAAAGAGATTTGTCTTGTTA
>XM_036944390.1
CTCACTAAAATTAGGCACCAGGCGTGTCCGTACAGCCTTTCCCTGCACACTCACGTCTTCCTGCTTCGAAAGCGTTTGCGGACGGAGTGCTAGGACCATGGCGGCAGTGCGCAGTCTACGGGTGTCGGTAAAGCCAGACAGTGGGCCAGACCACTCAGAATCGGACTCGGATTCAGACTCGGACCGAGGTGCCCGTGAATCTGAAccgatggaggtggaggagggtgaACTCGAGGTGGAAAACATCCCCGTTAACCGGTCTTTGAAGGAATTGTTGCCGGACACAAGTCGGCGGTATGAGAACAAAGCTGGCACATTCATCACTGGAATCGATGTCACATCAAAGgaGGCGattgagaggaaggagaagagagcgGAAAGGTTCCACTTCCGTGCAGAGGCCAACCTGGCCCAGAAGAATGTGGTGTTGGACAGAGAAACCATGAAGAAAGCCATCCCTAACTTGCGCCTGGAGGCGTTGCACGTGGCGGGTGTTGATGATATGAGCACCCAGGATGTGTTTGGCTACTTTAAGGAGTACCCTCCAGCACACATCGAGTGGATTGACGACACCTCCtGTAATGTGGTGTGGCTGGATGATGTCACTTCCACCCGGGCTCTGATCAACATCAGCCGCATGCCTGACCCAGAGGGGGTTACCACGGAGACAGACCGCACCAAAGAACCTGGTGATCCCACCCAGGAGAGCAAGGCTCGCAGAGAACAAGGCTCGGATGACGATGATGGAGAGGTGgatgaggaggggaaagagatggTGAAGGAGAATGAGGGGAAAGCCTGCGAGGTAGACACAGAGAAGAAAACAGAACCAGAGACCACCCAGgTGGACCTGCTGTCTCAGGCAGAGAGTGAGTCTCTGCTCCGGAATGACCTACGACCGGCCATCAAACCCTTCAAGGGCAACAAACTCTTCCTGAGGTTGGCCACTCACGGTGATAAGAAGGAGCTGGGTGCTGCGAGGAAGAGCAGATATTACATGAAGTACGGCAACCCGAACTACGGAGGCATGAGGGGCATCCTCAGCAACTCCTGGAAGAGACGGTATCACACGCGCAGAATCGTGAGCAAGAGCAAGAAACCCCTGATAGGGGACAGCATGGGGGACACATCACcctacacacatagacactctgCTGACCTGGTCAACCTACCAGAAGAACcaatagaggaagaggaggaggaggatgaggaagaggaggacatggACTCAGACGACAGGGTGGTGGAGtacaaggagaaggagaaggagaagagggagagggggggaggtccAGGGGTGGCCCTGCGGAGTCGTTTGGGCAggccctcctcttccccctctgtcTCGTCAGACTCAGACGAAATGGACTATGACTTGGAGCTCAAGATGATCTCAACCCCCTCTCCCAAGAAGAGCATGAAGATGACCATGTATGCAGACGAGGTGGAGACCAACCTCAAGACTATACGACACTCTTCTGTTCGCAGTGACAGCGGCTTGGGGGGTAGTGGTGTCCGGAACAggattggtggaggaggaggaagtggaggatcAGTAGGCGGGACCAAAAGCAGTGCAGTGGAGAAAGTGATGGATGTGAGGCAGCTATTGGAGGAAAAAAGACAGAGCCTCACCCAGCATAGACAGCGCACCCCTGTGGCCAGTAGTGGAAAGACAGatgtgaGGCAGAGGTTAGGGAAGAGACCCTACTCTCCTGAGAGACGACACTCCGCCTCCCCTGTCGCCTCCCGAGACTCACCCCCTCCCCGAGAGCCAATCACAGATGTGCACAGCCGACTGGGCATGGCCAAACTAGACTCCCGCGGCCTCTACTCTGATTCGTCCAAAGACAGGAAATCAAGTCGTCTGTGGAGCAGGCTCGGCCCCTCCTCCCATAAGGGTGGTGTTCCCGAGCGGAAGCCTTCCAGTCGCCGTGCGGGGTCTGGATCAGCCAGCTCCAGGTTGGGGGGGCgggaaggagaagaggaaaaTGAGGAGGAGGACGACTCTGCACTGCAGAAGGTGTGGGGGGCCTTGATCAAACAGAAGGAACAGCAGACCCACAAAATGAAGAAGAGTCGGCTTGACAACCTGCCCTCGCTACAGATTGAGATCAGCCGGGAGAGCAGTAACGGATCTGACTCAGACTCCTGAGAccgagggggagaaagaaagagcgggAGATGTGTGGATTTGGTCATGCCTTCATCTAGAGCTGAAAGGTGATCATCCACCCTCGCCCTCCTCTTGAGTTACCTTTCTTTCTCAGTGTCTGGAGGACTCTTGATCCTTGGGCCCCTGTCGCTGTGGCCTGATCCATCGTACAAACATAAAAGAAAAGACTCTTTTATAAagagaaatgagaaaataaaCTGGACAGAATTTTTTTGAAAGACTGAGACGTTCTGTTTCAGGACAGGAGGccattttgtttttgtattaCATTATCTCTGCGGCACATGGGACTGTTGTTCTGATCAAACCTGTTCCCATGACATTTCACCCTCTGATAGCCTACCTACATgtcaagtcatgtccaatcattaATGAGCAATATAAATGTCTCAATAACCTCCTGTGAAGTCGACTACAGAAGAACTGTGACAGAGTAAGAGGCAGATACTGAGCTTGCTccgtctgtttctctgtgtgtggaacCAGACACTGTATCATATGTGGTATCTGTGTGAGTGACTATGAACAACAAATATATGGTTTGTGGCATTTTTTTTTCCTTCCAAAGGCTGAGGCCATAGAGAAGACCACCAGATGAATTGATTCTCAACTGAAAGGTTTTGTACTTTGACTGTTGGTATTATGTGCAAATGGCCAATGTTGACCATATTATGTTATTCAAGGCGGAAGAGCGTGCGTgccaaatggaaccatattccatatgtagtacactacttttgaccagggccttaaaagtagtgcactatgtagggaatagggtgccatttgatatgTACACCTACATTCCCAGATGGAAAACAAATTGATTTAAGGTGTCAGCAGAAATAAAGAGATTTGTCTTGTTA

Function

symbol description
ncbp3 Predicted to enable RNA 7-methylguanosine cap binding activity and mRNA binding activity. Predicted to act upstream of or within 7-methylguanosine mRNA capping and mRNA transport. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human NCBP3 (nuclear cap binding subunit 3).

NR:

description
nuclear cap-binding protein subunit 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944389.1 False 3127 mRNA 0.52 12 42605307 42624228
XM_036944390.1 True 3042 mRNA 0.52 13 42605311 42624228

Neighbor

gene id symbol gene type direction distance location
tpst1l tpst1 coding upstream 59333 42528504 ~ 42545974 (+)
LOC110490091 crcp coding upstream 91670 42509769 ~ 42513637 (+)
LOC110490089 zpld1 coding upstream 161268 42398093 ~ 42444039 (+)
trnaa-ugc-120 NA coding upstream 231183 42374053 ~ 42374124 (+)
trnaa-ugc-119 NA coding upstream 232105 42373131 ~ 42373202 (+)
alg8 alg8 coding downstream 72487 42696715 ~ 42725617 (+)
guca1d LOC106602844 coding downstream 113400 42737628 ~ 42759052 (+)
trnaa-cgc-2 NA coding downstream 257531 42881759 ~ 42881830 (+)
LOC118938889 kif12 coding downstream 509979 43134207 ~ 43156862 (+)
slc13a2 LOC106602849 coding downstream 606327 43230555 ~ 43300368 (+)
G1294276 NA non-coding upstream 36531 42557390 ~ 42568776 (+)
G1294052 NA non-coding upstream 155570 42449475 ~ 42449737 (+)
trnaa-ugc-118 NA non-coding upstream 221702 42371805 ~ 42383605 (+)
G1293979 NA non-coding upstream 281970 42321591 ~ 42323337 (+)
G1293974 NA non-coding upstream 300754 42304297 ~ 42304553 (+)
G1294336 NA non-coding downstream 20786 42645014 ~ 42645230 (+)
G1294325 NA non-coding downstream 59396 42683624 ~ 42684414 (+)
G1294362 NA non-coding downstream 110063 42734291 ~ 42734604 (+)
G1294322 NA non-coding downstream 145267 42769495 ~ 42770500 (+)
G1294476 NA non-coding downstream 323307 42947535 ~ 42950110 (+)
G1293295 NA other upstream 695696 41909034 ~ 41909611 (+)
G1293072 NA other upstream 1017163 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 2474573 40089464 ~ 40132600 (+)
G1291464 NA other upstream 2537400 40067558 ~ 40067907 (+)
G1290614 NA other upstream 3478298 39126272 ~ 39127009 (+)
G1294319 NA other downstream 140625 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 972696 43596924 ~ 43597464 (+)
G1295730 NA other downstream 1291950 43916178 ~ 43916479 (+)
G1295845 NA other downstream 1405208 44029436 ~ 44029861 (+)
cblb cblb other downstream 1697275 44173352 ~ 44326246 (+)

Expression


Co-expression Network