LOC110490104 (LOC106602850)


Basic Information

Item Value
gene id LOC110490104
gene name LOC106602850
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43530002 ~ 43534234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563274.2
ccacacacacacctccctggcAGAGCGCTTAGTGGAACCCTGCGAAACACACAGCTTACGTTTTAGCACTGAGACAGAAGGACATAATGGCTCTGACCAACCCAATGAACCCTGTGAACCCCATGCCCATGGGCCCATGGAAGATCACAGTGTACGACCAGGAGTACTTCCAGGGAAAGCGTATGGAGTTCACTGCCTGCTGCCAGAACATCATGGAGTGTGGCATGGAGAACATCCGCTCCCTGAAGGTCGAGTGTGGAGCCTGGGTTGGGTATGAGCACTCCAGTTTCTGTGGCCAGCAGTTTGTCCTGGAGAAGGGAGACTACCCCCGTTTTGAGGCCTACAGCGGCAGCAACTCCTACCGCATCGAGAGGATGATCTCGTTCAGACCCATCTGCTCCGCTagccacAAGGAGTCCCGTATGACCATCTATGAAAAGGAGAACATGATTGGTCGCCAGTTTGAGATGTGTGATGACTACCCCTCCCTGCAGGCCATGGGCTGGTTCAACAACGAGGTTGGATCCATGCACATCCAGAGCGGAGCcttTGTGTGCTACCAGTTCCCCGGCTACCGTGGCCACCAGTACATCATGGAGTGTGACTGCCACGGAGGAGAGTACAAGTGTTACCGTGAGTTTGGCTCCCACGCCCAGACCCCTCAGATCCAGTCTATCAGGAGGATTCAGCACTGAGCAGGAAACACCTTCTTcatccttcctcctcttcttctacttcctactcctcctccctctcttctctcccctctcctactaCTCCGCCTTCTACTCCGCCTCCTCTCCCTCGCCCATCCCGGTTCCGCTGGTCCAGCTAGTCCAGGCAGGATTGCGGGCCGGGCCTCAGGTGCTTACCGGCGACGTCAAATGTTCACGGCACGTATTTTTTTAAACCATCATGAAAAACAAAGGAAGTACGAATTGAAAGACAGGGAATgacagagatgagagaaagagtaATGAATCCTCAACACCTCCCAGAGGCTGGACGCCAAACCTTTTGCTCCTCTTCGTCCACgacatcatcattatcatcagcttcttcatcatcatcatcataatcaccACTATTGCCTGTCACTGTAGTTGTGATGGTATACATTGTATGAGACTGATGAATAAAGAGAACaagcaaaagaaagagagaataacaAGA

Function

NR:

description
PREDICTED: beta-crystallin A1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563274.2 True 1173 mRNA 0.52 5 43530002 43534234

Neighbor

gene id symbol gene type direction distance location
trnas-gcu-162 NA coding upstream 12982 43516939 ~ 43517020 (+)
trnas-gcu-161 NA coding upstream 15213 43514708 ~ 43514789 (+)
trnas-gcu-160 NA coding upstream 16670 43513251 ~ 43513332 (+)
trnas-gcu-159 NA coding upstream 17788 43512133 ~ 43512214 (+)
trnas-gcu-158 NA coding upstream 18907 43511014 ~ 43511095 (+)
LOC110490107 lis1b coding downstream 107147 43641381 ~ 43692014 (+)
LOC110490730 NA coding downstream 161978 43696212 ~ 43697965 (+)
mntb LOC106602836 coding downstream 164221 43698455 ~ 43718346 (+)
mrps17 mrps17 coding downstream 463779 43998013 ~ 43999931 (+)
nipsnap2 nips2 coding downstream 471179 44005413 ~ 44024583 (+)
G1295289 NA non-coding upstream 5943 43523818 ~ 43524059 (+)
trnas-gcu-157 NA non-coding upstream 19548 43509101 ~ 43510533 (+)
G1295208 NA non-coding upstream 72226 43426842 ~ 43457776 (+)
G1295185 NA non-coding upstream 176372 43347076 ~ 43353630 (+)
G1295178 NA non-coding upstream 198625 43331079 ~ 43331377 (+)
G1295306 NA non-coding downstream 7039 43541273 ~ 43541595 (+)
G1295316 NA non-coding downstream 14558 43548792 ~ 43549416 (+)
G1295346 NA non-coding downstream 50050 43584284 ~ 43584574 (+)
G1295329 NA non-coding downstream 52691 43586925 ~ 43588112 (+)
G1295331 LOC106602853 non-coding downstream 60865 43595099 ~ 43595445 (+)
G1294319 NA other upstream 762065 42764853 ~ 42767937 (+)
G1293295 NA other upstream 1620391 41909034 ~ 41909611 (+)
G1293072 NA other upstream 1941858 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 3399268 40089464 ~ 40132600 (+)
G1291464 NA other upstream 3462095 40067558 ~ 40067907 (+)
G1295348 LOC106602853 other downstream 62690 43596924 ~ 43597464 (+)
G1295730 NA other downstream 381944 43916178 ~ 43916479 (+)
G1295845 NA other downstream 495202 44029436 ~ 44029861 (+)
cblb cblb other downstream 787269 44173352 ~ 44326246 (+)
G1296266 LOC106602826 other downstream 1012945 44547179 ~ 44581048 (+)

Expression


Co-expression Network