cldn2 (cldn7)


Basic Information

Item Value
gene id cldn2
gene name cldn7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44719300 ~ 44721744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563311.2
TGCCAGTGTCTGTGTACATGGAGAGGTGAAGGACCTGATAGGTTAGTGTGATGGTGGGTTCACAAACACAAAGAGAGAAGCGCAATATACTGAGCAGTAgagagtggaggaaagagagaggggaaaaaagacAAAAGTCAAGATTGAGACTGTAGAGTCTAACAAGAATTGAGAGAGAAcatcattgagagagagagaacatcattCGTCAGGTGTTGTGTTGTCCTTTCCTGACAAAGTGGCCAGAATTATTATCACAGTCGTAGCAAGCTAGAGTAACAATCCATCTGGAGTGTTTGAAAAGTGGCTACCGAGTGTTATGGTGAGGAACATGGATTCAATCAAGTTACCAGTCAGTCGGCAGGTCAGTCTTTGCTAaccagtgtgtcagagagagagagagagagagagagagagagagagagagaggctgggtgtGAGTAAGCAGTTATCACAGGATTGGAACTGGTTCTATGGCAAGTTACAGTCAAAGAGAGAGCCGCGAGCTTAGAGGATTGTAACGGGCAACAGTACCGTAATAGCAATCGTGTTTGTAGTAGAAGAGAGTGTTGTGTTAGTGTGGGGAAAGAGGACCAGTGAGAGTGTATGAGTTAAAAATACAGAGAGCGGGAGTTAACTGAAATAGCAGCAAGAGGGtatatcattatcatcatcagtcCACCATGGCGTCAGCTGCTCTAGAACTGATGGGCTTCTTCATGGGTCTGCTAGGCATGCTGGGTACCCTGGTGTCCACAGTGCTTCCCTACTGGCGGACATCTGCCCACATCGGGTCCAACATCGTCACTGCCGTGGACAATATGAAGGGCCTCTGGATGGAGTGTGTCTACCAGAGCACCGGAGCCTTCCAGTGTGAGACCTACAACTCCATGCTGGCCTTACCCTCAGACCTCCAGGCCTCCCGGGCCCTGATGGTGGTCTCCGTGGTCTTTTCCGTCCTGGCCGTCGTCATCTCCACCGTGGGCATGCAGTGTACCATTTGCATGGAGGGCTCCTCGGCTAGAGGCCGAGTGGCCGGTACTGGGGGAGGCCTCTTCCTCACCGCGGGGTTCCTGGCTCTGATCCCGGTGTCGTGGACCACCCACGAGGTTGTCCAGACCTTCTACCAAGCCAACCTGCCCAGCAGCTTGAAGTACGAGCTGGGGGACTGTCTGTACGTGGGGCTGGCCGCCGCCCTGCTCTCCATGCTGGGCGGGGGGCTGCTGTGTGTCTCCTGCTGTGAGAAGGCGGATGGGGGGCGCCGTGGAGGGAGGAGGCACGGCGGAGGGTACCCCTACCCAGCCCCGGGCATGGGGGTAGGCACTGGGAGGGCCAGGACCAGCTCACAGACCTATAGGAACCCAACGCTACAGATGGGGGTGAACGCTGCCACCAAGGCAGCGACCCTGGCAAGGAGTCACACCAGCACTACTACCCAGTCCAGCACCCCCGCCCAGGGGGCCAAGAAAGACCCACGCCGCAACCCTGCGGTGGGCTACGATGTCACTGGGTACGTCTGATCGTGTTCAGGCCAATgttaacattcacacacacatcacgCTGTCTCTTCTATACAGTATGTGGTGCAGAGCATGACCACCCCAACAACTTGCTAAGGTAACTGACTGTGTTATCTTTTACAATTAACTGATCAGGGGACTTTTAGTGCCACACTACCGTATAGGAAGACTTTTGGCTCCTCGCAATGGAAATCAGAGAGACTTGTAGTGCTTGACCACGCATACAGTACTGTAGTGACTGAACGAGTATGTTTTATACACCCTTTGATAGATTTACTATTGAAAATGGATTTATTGCAGGAACATGTCTTGATATGATTACTCTGAGGCGTTCGCTCCATCTCTATttttttgctctacgacccccacaagcctcgtctgaaggtagcccggtaccagttgaaaaaattaATAGAAGTATGTAACGGTGGTTTAGTGCCCCAGAAAACGTGTTAAATATTGCAAAAGAAAATACGCATGTATAATCATTTCCTGATctgtcttatatctctcagatgcaggacagacacttcaaaacaaatgtccttttgatatttttttctgtttttccatgtatgaatctgttattcaatgcatttctatgggctaatagcagtaaagccaaattcaatgtttcataaaaaaatatataaaataaatatgtttttatacCTAAATGGGTTCTagaattcaaaatcaaataactaaatgatccatggtatgaccatcttaaaacaattccatatgttagcttagtagaaccccccccccctcaaccccCCCTAGACTCTTGTGAATTATAATCATTGACAAATGTTCATTATCAATTACTATGTTAGCTAATCTCTACATGTTTCTTTTGATTGATAATCATTAATGTGAAAGTTGAAAGGCTTTCTTCTGTTTTGCATAATGTTTCATGTGA

Function

symbol description
cldn7 Predicted to enable identical protein binding activity. Predicted to be involved in bicellular tight junction assembly and calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules. Located in plasma membrane.

NR:

description
claudin-4-like isoform X1

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563311.2 True 2445 mRNA 0.48 1 44719300 44721744

Neighbor

gene id symbol gene type direction distance location
LOC110490732 LOC106602993 coding upstream 70470 44646793 ~ 44648830 (+)
LOC110490121 LOC106602827 coding upstream 115501 44586285 ~ 44603799 (+)
cblb cblb coding upstream 393054 44173352 ~ 44326246 (+)
nipsnap2 nips2 coding upstream 694717 44005413 ~ 44024583 (+)
mrps17 mrps17 coding upstream 719369 43998013 ~ 43999931 (+)
LOC110490127 LOC106602822 coding downstream 14016 44735760 ~ 44848514 (+)
LOC110490129 LOC106602819 coding downstream 216241 44937985 ~ 44993895 (+)
LOC110490132 LOC106602816 coding downstream 368401 45090145 ~ 45151980 (+)
LOC110490134 LOC106602815 coding downstream 436325 45158069 ~ 45174534 (+)
LOC110490135 NA coding downstream 471149 45192893 ~ 45196185 (+)
G1296334 NA non-coding upstream 43257 44675750 ~ 44676043 (+)
G1296331 NA non-coding upstream 48273 44670685 ~ 44671027 (+)
G1296324 prrg3 non-coding upstream 56049 44662832 ~ 44663251 (+)
G1296322 NA non-coding upstream 58590 44660477 ~ 44660710 (+)
G1296189 prrg3 non-coding upstream 62672 44654915 ~ 44656628 (+)
G1296410 NA non-coding downstream 139311 44861055 ~ 44861335 (+)
G1296412 NA non-coding downstream 141808 44863552 ~ 44866078 (+)
G1296446 NA non-coding downstream 203128 44924872 ~ 44925086 (+)
G1296452 NA non-coding downstream 209307 44931051 ~ 44931610 (+)
G1296430 NA non-coding downstream 215461 44937205 ~ 45000672 (+)
G1296185 NA other upstream 67221 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 138252 44547179 ~ 44581048 (+)
G1295845 NA other upstream 689439 44029436 ~ 44029861 (+)
G1295730 NA other upstream 802821 43916178 ~ 43916479 (+)
G1298452 NA other downstream 1532595 46254339 ~ 46260437 (+)
brd1a LOC106575995 other downstream 1592508 46293582 ~ 46316075 (+)
G1299894 NA other downstream 2848086 47569830 ~ 47570663 (+)
G1300598 LOC106575986 other downstream 3224624 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 3638084 48359799 ~ 48360553 (+)

Expression


Co-expression Network