LOC110490135


Basic Information

Item Value
gene id LOC110490135
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 45192893 ~ 45196185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563330.2
tcacatgATCAAGTGGCCCCTTCACATAACTTATCTACCGCTGTAGCAGACTTCACGGTGCACTGATGCAGCCCTTTCGCAACAAAAACATGCAGACAAGGATATATATTTTACTGTGAAGAATTATTGCAAAGTTAATGGACTTCATGACATTCTTTTGGATACGAAAGTAGGCTACTTTGTCTTTTTACTTTTCTAACCATTGTAGGGTAAGTGACAGGAGTGCGACACAAAGTGCAATGAGTGAATAACTTTCTACCGGGTTTAATAACAGAGGCTTCTGGGAGAACAACAACAACCAAAGGTTCTGAAGTCTGAACGCACCCTGgtactgacctttgacctctagcCATGTCTCAGAGTAACCCCTCCTTCCAGCTCATCCAGACTCTGAGGAAGTCTCCCGCTGTGTTCCGCCGCCGGTTCCACCTCCGGCCCAACCGCACCGCTACCCTCTCCCACGGGGATCCCCTCTACAAGGTGCTCTACCTGGGCACTGAGAAAATCTACTCCCTGGATCTGGAGCAGGCCCAGGGGGCCATAGGCCTGCTGCTCCAGCAGTGGGCCCCGGGGGCCCCTGAGAAACTGTGCAAGGAGCACGCTCTGGTGTTGCGGCGGCGTTACATAGAGGTGAAGGAGATTGCCACGGGGAGACAGCTCGCTAAGACCTATCTGAGAGACATTGCGTTCTGCGCGGCCGACACCAAGCACCCCAATGTGTTCCTCTACATCTGTAAGCAGCAAGGCCAGCAACTGCAGTTACAGTGCAAGATATTCTGGTGCACCAGTGCTGAGAGAGCTAAGGACATCACCGCTTGTCTGGCAAGGAGCTTTCAAACGGCTCTTAGTGATTGGCAGGGGCAGGGTAGCGAGACCAATCACATGGAGAAAGGGGAGGGATCATCGGAGGTGGATGGACTGTCAGTCATCCCAAGCCTTCATACTAATACCTCCTCTGCTCTATCAGGAGCTCTAAGGACAGGTCGCTGGAGGAGGAGTAGGGGTGTGGCTACTCTGTGTCCTCTCAGAGCGatgaggaaggagaggacaggcaGCACCACCACCAATGACAGCACACAGTCAACCATTTGATATTTGACTTTGACTCTCTCTGCCAACTGATAATCTATTGGGCCGAACAGAGCCTCACTAGCTCCTGCAGTACCCACCAGTATTGAAGAATGGACCACTGCCAAACTAAGCTTGGAGCCCAGAactacattttgtgtgtgtgctggcCAGCTGCACTGTGTGTCTGTCATGAGAGACTGCTGCCAAACATATTCTTATTATGGACTTGAATAAAGCTAAGGGTGTGACTCAAAAGCCCCACATGCCACAGAGCACCCCTTTATCACCACCAACAGGATCATTGTGTTTACGCCTGAGCACTATTTTGGCTTGGtttgaattttttattttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccggccaagttaaatgggtttccattgcattttcaactctactgatggctTTGTTACCAAGAAAATTGACTTATGTAGTgagtgtgcccactctggtattggcacgtTCACATTAGCCAACAGCTCgcataatacagtacacatatagcctacatgatgataTTACTATGGACAAAAGAGcgagattatttttatttatcaaaCAGCAGCCAAGCATCAATCATCGTGTCACCAGCATAAGAGCCTCAATATTTATTgcaaaggagcatcaagctcatcactttgcactttcaccatcctgtgcagttcatcatcatttatttaatctgtagcctaataaactgcagcCTAATAatgctttcccgagtcgtagtgggaggaccacacatgtCATTGCGTGATtccaaatttgatttgatataaaggTCATTCCCAGCTAGCACAGAACGTTCCTGTAACGTTCCCTAAAGGTTCTCCTTTGGTTCTTAGAAAAATAACTTTCACAGAATGTTCTTTGACAGAGTTGAAAGTGCATGAGAAAACAATACATTTACTAAGTGATTAATCGG
>XM_021563332.2
tcacatgATCAAGTGGCCCCTTCACATAACTTATCTACCGCTGTAGCAGACTTCACGGTGCACTGATGCAGCCCTTTCGCAACAAAAACATGCAGACAAGGATATATATTTTACTGTGAAGAATTATTGCAAAGTTAATGGACTTCATGACATTCTTTTGGATACGAAAAGGCTTCTGGGAGAACAACAACAACCAAAGGTTCTGAAGTCTGAACGCACCCTGgtactgacctttgacctctagcCATGTCTCAGAGTAACCCCTCCTTCCAGCTCATCCAGACTCTGAGGAAGTCTCCCGCTGTGTTCCGCCGCCGGTTCCACCTCCGGCCCAACCGCACCGCTACCCTCTCCCACGGGGATCCCCTCTACAAGGTGCTCTACCTGGGCACTGAGAAAATCTACTCCCTGGATCTGGAGCAGGCCCAGGGGGCCATAGGCCTGCTGCTCCAGCAGTGGGCCCCGGGGGCCCCTGAGAAACTGTGCAAGGAGCACGCTCTGGTGTTGCGGCGGCGTTACATAGAGGTGAAGGAGATTGCCACGGGGAGACAGCTCGCTAAGACCTATCTGAGAGACATTGCGTTCTGCGCGGCCGACACCAAGCACCCCAATGTGTTCCTCTACATCTGTAAGCAGCAAGGCCAGCAACTGCAGTTACAGTGCAAGATATTCTGGTGCACCAGTGCTGAGAGAGCTAAGGACATCACCGCTTGTCTGGCAAGGAGCTTTCAAACGGCTCTTAGTGATTGGCAGGGGCAGGGTAGCGAGACCAATCACATGGAGAAAGGGGAGGGATCATCGGAGGTGGATGGACTGTCAGTCATCCCAAGCCTTCATACTAATACCTCCTCTGCTCTATCAGGAGCTCTAAGGACAGGTCGCTGGAGGAGGAGTAGGGGTGTGGCTACTCTGTGTCCTCTCAGAGCGatgaggaaggagaggacaggcaGCACCACCACCAATGACAGCACACAGTCAACCATTTGATATTTGACTTTGACTCTCTCTGCCAACTGATAATCTATTGGGCCGAACAGAGCCTCACTAGCTCCTGCAGTACCCACCAGTATTGAAGAATGGACCACTGCCAAACTAAGCTTGGAGCCCAGAactacattttgtgtgtgtgctggcCAGCTGCACTGTGTGTCTGTCATGAGAGACTGCTGCCAAACATATTCTTATTATGGACTTGAATAAAGCTAAGGGTGTGACTCAAAAGCCCCACATGCCACAGAGCACCCCTTTATCACCACCAACAGGATCATTGTGTTTACGCCTGAGCACTATTTTGGCTTGGtttgaattttttattttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccggccaagttaaatgggtttccattgcattttcaactctactgatggctTTGTTACCAAGAAAATTGACTTATGTAGTgagtgtgcccactctggtattggcacgtTCACATTAGCCAACAGCTCgcataatacagtacacatatagcctacatgatgataTTACTATGGACAAAAGAGcgagattatttttatttatcaaaCAGCAGCCAAGCATCAATCATCGTGTCACCAGCATAAGAGCCTCAATATTTATTgcaaaggagcatcaagctcatcactttgcactttcaccatcctgtgcagttcatcatcatttatttaatctgtagcctaataaactgcagcCTAATAatgctttcccgagtcgtagtgggaggaccacacatgtCATTGCGTGATtccaaatttgatttgatataaaggTCATTCCCAGCTAGCACAGAACGTTCCTGTAACGTTCCCTAAAGGTTCTCCTTTGGTTCTTAGAAAAATAACTTTCACAGAATGTTCTTTGACAGAGTTGAAAGTGCATGAGAAAACAATACATTTACTAAGTGATTAATCGG
>XM_021563328.2
acatgATCAAGTGGCCCCTTCACATAACTTATCTACCGCTGTAGCAGACTTCACGGTGCACTGATGCAGCCCTTTCGCAACAAAAACATGCAGACAAGGATATATATTTTACTGTGAAGAATTATTGCAAAGTTAATGGACTTCATGACATTCTTTTGGATACGAAAGTGCAATGAGTGAATAACTTTCTACCGGGTTTAATAACAGAGGCTTCTGGGAGAACAACAACAACCAAAGGTTCTGAAGTCTGAACGCACCCTGgtactgacctttgacctctagcCATGTCTCAGAGTAACCCCTCCTTCCAGCTCATCCAGACTCTGAGGAAGTCTCCCGCTGTGTTCCGCCGCCGGTTCCACCTCCGGCCCAACCGCACCGCTACCCTCTCCCACGGGGATCCCCTCTACAAGGTGCTCTACCTGGGCACTGAGAAAATCTACTCCCTGGATCTGGAGCAGGCCCAGGGGGCCATAGGCCTGCTGCTCCAGCAGTGGGCCCCGGGGGCCCCTGAGAAACTGTGCAAGGAGCACGCTCTGGTGTTGCGGCGGCGTTACATAGAGGTGAAGGAGATTGCCACGGGGAGACAGCTCGCTAAGACCTATCTGAGAGACATTGCGTTCTGCGCGGCCGACACCAAGCACCCCAATGTGTTCCTCTACATCTGTAAGCAGCAAGGCCAGCAACTGCAGTTACAGTGCAAGATATTCTGGTGCACCAGTGCTGAGAGAGCTAAGGACATCACCGCTTGTCTGGCAAGGAGCTTTCAAACGGCTCTTAGTGATTGGCAGGGGCAGGGTAGCGAGACCAATCACATGGAGAAAGGGGAGGGATCATCGGAGGTGGATGGACTGTCAGTCATCCCAAGCCTTCATACTAATACCTCCTCTGCTCTATCAGGAGCTCTAAGGACAGGTCGCTGGAGGAGGAGTAGGGGTGTGGCTACTCTGTGTCCTCTCAGAGCGatgaggaaggagaggacaggcaGCACCACCACCAATGACAGCACACAGTCAACCATTTGATATTTGACTTTGACTCTCTCTGCCAACTGATAATCTATTGGGCCGAACAGAGCCTCACTAGCTCCTGCAGTACCCACCAGTATTGAAGAATGGACCACTGCCAAACTAAGCTTGGAGCCCAGAactacattttgtgtgtgtgctggcCAGCTGCACTGTGTGTCTGTCATGAGAGACTGCTGCCAAACATATTCTTATTATGGACTTGAATAAAGCTAAGGGTGTGACTCAAAAGCCCCACATGCCACAGAGCACCCCTTTATCACCACCAACAGGATCATTGTGTTTACGCCTGAGCACTATTTTGGCTTGGtttgaattttttattttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccggccaagttaaatgggtttccattgcattttcaactctactgatggctTTGTTACCAAGAAAATTGACTTATGTAGTgagtgtgcccactctggtattggcacgtTCACATTAGCCAACAGCTCgcataatacagtacacatatagcctacatgatgataTTACTATGGACAAAAGAGcgagattatttttatttatcaaaCAGCAGCCAAGCATCAATCATCGTGTCACCAGCATAAGAGCCTCAATATTTATTgcaaaggagcatcaagctcatcactttgcactttcaccatcctgtgcagttcatcatcatttatttaatctgtagcctaataaactgcagcCTAATAatgctttcccgagtcgtagtgggaggaccacacatgtCATTGCGTGATtccaaatttgatttgatataaaggTCATTCCCAGCTAGCACAGAACGTTCCTGTAACGTTCCCTAAAGGTTCTCCTTTGGTTCTTAGAAAAATAACTTTCACAGAATGTTCTTTGACAGAGTTGAAAGTGCATGAGAAAACAATACATTTACTAAGTGATTAATCGG
>XM_021563329.2
catgATCAAGTGGCCCCTTCACATAACTTATCTACCGCTGTAGCAGACTTCACGGTGCACTGATGCAGCCCTTTCGCAACAAAAACATGCAGACAAGGATATATATTTTACTGTGAAGAATTATTGCAAAGTTAATGGACTTCATGACATTCTTTTGGATACGAAAGTAGGCTACTTTGTCTTTTTACTTTTCTAACCATTGTAGGGTGCAATGAGTGAATAACTTTCTACCGGGTTTAATAACAGAGGCTTCTGGGAGAACAACAACAACCAAAGGTTCTGAAGTCTGAACGCACCCTGgtactgacctttgacctctagcCATGTCTCAGAGTAACCCCTCCTTCCAGCTCATCCAGACTCTGAGGAAGTCTCCCGCTGTGTTCCGCCGCCGGTTCCACCTCCGGCCCAACCGCACCGCTACCCTCTCCCACGGGGATCCCCTCTACAAGGTGCTCTACCTGGGCACTGAGAAAATCTACTCCCTGGATCTGGAGCAGGCCCAGGGGGCCATAGGCCTGCTGCTCCAGCAGTGGGCCCCGGGGGCCCCTGAGAAACTGTGCAAGGAGCACGCTCTGGTGTTGCGGCGGCGTTACATAGAGGTGAAGGAGATTGCCACGGGGAGACAGCTCGCTAAGACCTATCTGAGAGACATTGCGTTCTGCGCGGCCGACACCAAGCACCCCAATGTGTTCCTCTACATCTGTAAGCAGCAAGGCCAGCAACTGCAGTTACAGTGCAAGATATTCTGGTGCACCAGTGCTGAGAGAGCTAAGGACATCACCGCTTGTCTGGCAAGGAGCTTTCAAACGGCTCTTAGTGATTGGCAGGGGCAGGGTAGCGAGACCAATCACATGGAGAAAGGGGAGGGATCATCGGAGGTGGATGGACTGTCAGTCATCCCAAGCCTTCATACTAATACCTCCTCTGCTCTATCAGGAGCTCTAAGGACAGGTCGCTGGAGGAGGAGTAGGGGTGTGGCTACTCTGTGTCCTCTCAGAGCGatgaggaaggagaggacaggcaGCACCACCACCAATGACAGCACACAGTCAACCATTTGATATTTGACTTTGACTCTCTCTGCCAACTGATAATCTATTGGGCCGAACAGAGCCTCACTAGCTCCTGCAGTACCCACCAGTATTGAAGAATGGACCACTGCCAAACTAAGCTTGGAGCCCAGAactacattttgtgtgtgtgctggcCAGCTGCACTGTGTGTCTGTCATGAGAGACTGCTGCCAAACATATTCTTATTATGGACTTGAATAAAGCTAAGGGTGTGACTCAAAAGCCCCACATGCCACAGAGCACCCCTTTATCACCACCAACAGGATCATTGTGTTTACGCCTGAGCACTATTTTGGCTTGGtttgaattttttattttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccggccaagttaaatgggtttccattgcattttcaactctactgatggctTTGTTACCAAGAAAATTGACTTATGTAGTgagtgtgcccactctggtattggcacgtTCACATTAGCCAACAGCTCgcataatacagtacacatatagcctacatgatgataTTACTATGGACAAAAGAGcgagattatttttatttatcaaaCAGCAGCCAAGCATCAATCATCGTGTCACCAGCATAAGAGCCTCAATATTTATTgcaaaggagcatcaagctcatcactttgcactttcaccatcctgtgcagttcatcatcatttatttaatctgtagcctaataaactgcagcCTAATAatgctttcccgagtcgtagtgggaggaccacacatgtCATTGCGTGATtccaaatttgatttgatataaaggTCATTCCCAGCTAGCACAGAACGTTCCTGTAACGTTCCCTAAAGGTTCTCCTTTGGTTCTTAGAAAAATAACTTTCACAGAATGTTCTTTGACAGAGTTGAAAGTGCATGAGAAAACAATACATTTACTAAGTGATTAATCGG
>XM_036944438.1
tgATCAAGTGGCCCCTTCACATAACTTATCTACCGCTGTAGCAGACTTCACGGTGCACTGATGCAGCCCTTTCGCAACAAAAACATGCAGACAAGGATATATATTTTACTGTGAAGAATTATTGCAAAGTTAATGGACTTCATGACATTCTTTTGGATACGAAAGTAGGCTACTTTGTCTTTTTACTTTTCTAACCATTGTAGGGTGCAATGAGTGAATAACTTTCTACCGGGTTTAATAACAGAGGCTTCTGGGAGAACAACAACAACCAAAGGTTCTGAAGTCTGAACGCACCCTGgtactgacctttgacctctagcCATGTCTCAGAGTAACCCCTCCTTCCAGCTCATCCAGACTCTGAGGAAGTCTCCCGCTGTGTTCCGCCGCCGGTTCCACCTCCGGCCCAACCGCACCGCTACCCTCTCCCACGGGGATCCCCTCTACAAGGTGCTCTACCTGGGCACTGAGAAAATCTACTCCCTGGATCTGGAGCAGGCCCAGGGGGCCATAGGCCTGCTGCTCCAGCAGTGGGCCCCGGGGGCCCCTGAGAAACTGTGCAAGGAGCACGCTCTGGTGTTGCGGCGGCGTTACATAGAGGTGAAGGAGATTGCCACGGGGAGACAGCTCGCTAAGACCTATCTGAGAGACATTGCGTTCTGCGCGGCCGACACCAAGCACCCCAATGTGTTCCTCTACATCTGTAAGCAGCAAGGCCAGCAACTGCAGTTACAGTGCAAGATATTCTGGTGCACCAGTGCTGAGAGAGCTAAGGACATCACCGCTTGTCTGGCAAGGAGCTTTCAAACGGCTCTTAGTGATTGGCAGGGGCAGGGTAGCGAGACCAATCACATGGAGAAAGGGGAGGGATCATCGGAGGTGGATGGACTGTCAGTCATCCCAAGCCTTCATACTAATACCTCCTCTGCTCTATCAGGAGCTCTAAGGACAGACAGGTCGCTGGAGGAGGAGTAGGGGTGTGGCTACTCTGTGTCCTCTCAGAGCGatgaggaaggagaggacaggcaGCACCACCACCAATGACAGCACACAGTCAACCATTTGATATTTGACTTTGACTCTCTCTGCCAACTGATAATCTATTGGGCCGAACAGAGCCTCACTAGCTCCTGCAGTACCCACCAGTATTGAAGAATGGACCACTGCCAAACTAAGCTTGGAGCCCAGAactacattttgtgtgtgtgctggcCAGCTGCACTGTGTGTCTGTCATGAGAGACTGCTGCCAAACATATTCTTATTATGGACTTGAATAAAGCTAAGGGTGTGACTCAAAAGCCCCACATGCCACAGAGCACCCCTTTATCACCACCAACAGGATCATTGTGTTTACGCCTGAGCACTATTTTGGCTTGGtttgaattttttattttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccggccaagttaaatgggtttccattgcattttcaactctactgatggctTTGTTACCAAGAAAATTGACTTATGTAGTgagtgtgcccactctggtattggcacgtTCACATTAGCCAACAGCTCgcataatacagtacacatatagcctacatgatgataTTACTATGGACAAAAGAGcgagattatttttatttatcaaaCAGCAGCCAAGCATCAATCATCGTGTCACCAGCATAAGAGCCTCAATATTTATTgcaaaggagcatcaagctcatcactttgcactttcaccatcctgtgcagttcatcatcatttatttaatctgtagcctaataaactgcagcCTAATAatgctttcccgagtcgtagtgggaggaccacacatgtCATTGCGTGATtccaaatttgatttgatataaaggTCATTCCCAGCTAGCACAGAACGTTCCTGTAACGTTCCCTAAAGGTTCTCCTTTGGTTCTTAGAAAAATAACTTTCACAGAATGTTCTTTGACAGAGTTGAAAGTGCATGAGAAAACAATACATTTACTAAGTGATTAATCGG

Function

NR:

description
uncharacterized protein LOC110490135 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563330.2 False 2046 mRNA 0.47 3 45192893 45196185
XM_021563332.2 False 1941 mRNA 0.47 3 45192893 45196185
XM_021563328.2 False 1979 mRNA 0.47 3 45192895 45196185
XM_021563329.2 False 2018 mRNA 0.47 3 45192896 45196185
XM_036944438.1 True 2020 mRNA 0.47 3 45192898 45196185

Neighbor

gene id symbol gene type direction distance location
LOC110490134 LOC106602815 coding upstream 18359 45158069 ~ 45174534 (+)
LOC110490132 LOC106602816 coding upstream 40913 45090145 ~ 45151980 (+)
LOC110490129 LOC106602819 coding upstream 198998 44937985 ~ 44993895 (+)
LOC110490127 LOC106602822 coding upstream 344379 44735760 ~ 44848514 (+)
cldn2 cldn7 coding upstream 471149 44719300 ~ 44721744 (+)
LOC118938959 NA coding downstream 90556 45286741 ~ 45286928 (+)
LOC118938961 NA coding downstream 90984 45287169 ~ 45287285 (+)
LOC110490136 NA coding downstream 100351 45296536 ~ 45299495 (+)
LOC110490137 NA coding downstream 142365 45338550 ~ 45376332 (+)
wnt7ba LOC106575957 coding downstream 382717 45578902 ~ 45595245 (+)
G1296611 NA non-coding upstream 1729 45190094 ~ 45191164 (+)
G1296527 NA non-coding upstream 48141 45092436 ~ 45144752 (+)
G1296430 NA non-coding upstream 192221 44937205 ~ 45000672 (+)
G1296623 NA non-coding downstream 12624 45208809 ~ 45209014 (+)
G1296689 NA non-coding downstream 127335 45323520 ~ 45323774 (+)
G1297355 NA non-coding downstream 137846 45334031 ~ 45334294 (+)
G1297413 NA non-coding downstream 223235 45419420 ~ 45419642 (+)
G1297416 NA non-coding downstream 234020 45430205 ~ 45430471 (+)
G1296185 NA other upstream 540814 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 611845 44547179 ~ 44581048 (+)
cblb cblb other upstream 866714 44173352 ~ 44326246 (+)
G1295845 NA other upstream 1163032 44029436 ~ 44029861 (+)
G1295730 NA other upstream 1276414 43916178 ~ 43916479 (+)
G1298452 NA other downstream 1058154 46254339 ~ 46260437 (+)
brd1a LOC106575995 other downstream 1118067 46293582 ~ 46316075 (+)
G1299894 NA other downstream 2373645 47569830 ~ 47570663 (+)
G1300598 LOC106575986 other downstream 2750183 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 3163643 48359799 ~ 48360553 (+)

Expression


Co-expression Network