LOC110490136


Basic Information

Item Value
gene id LOC110490136
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 45296536 ~ 45299495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036315.1
AAGACCGAAGTGTTTTTGGAAAAGAAGGTCAATTGATTCAGGACATCCTGTATGACAGTAGGTCTGACTGATCGTAGTTCAAAACAGTGATGCATAAATTAATCTTGCACTTGGTTCTGAAGCCTAACTCTATATGTATAAGCACTCATTGTCCAGTGGcgcttttaaaataaataaatatatatatatatatatttaaaaagcgCCACTGGAAAAAAAAGCGccatatatataatttattttgttcagtgtaggccTCTACTTGAATGCATATTCTACAGGCTACCTCTATGTTCAGTAGGAATGAATCACACGACTGCTATACAGTTGATAGTGAATGTTGCACTAAAATGTCACAATGACAATGTTACAATGAATATTGCACTAAAGTTCAAATGTTACAATATTAATGTTTCAGTACATGTTGCACTAAAGTAACAATGTTGAAATACATTGATGGTTGTCTTTTTGTCTTTGCTCTCAGTATTCATATCGTGTTGTTTAAGGGTTTTTGATGTGTAAAATAGTCACACTAGAATGTGACGGGGCATTCTAGAGGCAATGCTGGGGACTGCCAGTGACAAAgttttaaatgtgttaataacTAGGTTGGGATTTATATATGAACTTTGATTACTGCATAGGAGAAATATGTTAATTTAGTATATGTAACATTATCCCACCGGTCACAATTGTGACCGACCATAACACTTTTTCACCTACTTTTtcattaacatttttttttttaaatgattactAATGACacttgatttggatattttcatGTCTGGGAAAAATTGGGTTAAAATGAGAAGTGATTTTTTTCTAATAGACTGCATTTCACTTTGGGCTGACAAGCAGAGGAGGAGTGCAGGAAGTGGTAAGGAGGAGATTAGAATGGTGAGGAGTGGTCTCGTGTGTTTACAAGTATCAATTAAGCAGCCTGAAGCATTGTACTTTCTGTATTGCTAAAGGGATTGTGTTACTGTTATTTCACTTTTCAATAGTATAGTATAGATGGCTCTAGTGCGCTCATGTACACTTTGCTATAAGGTTGTGATTGGCTTCAGTCAGCACCTTAGGTAtacaccatgtgaggaacagtgaAGAAAGGGTGCTCCTTTGTAATTGGCAGTCGGGAcgtgtcaatgtcaggcaggagcagtgtccagtgacaggatgctccacacatctCAGCAGACTAGACTGGCATATAGACTCCCACACAGAGCTCAACagacaggttttagaggaccttTGGAGACGGCAGAGGCTGGCGGCGTGGAGGACATAGATCCCTGCCATCCCACTGGCAACAGATTTGGATATTGTGGAGACTAAggaaagaaggggaggaggaaatACTATGTTCACCaacagaagcagaggaggaagtggactgcaaagaggattcTGCTACTGCCACgcaccaatcctgagactgaCGAAAGCTGTgcaagagagggatgaggcactgaCAATGAGAAGTGAGACCAACCaatccattaaagaggacaacctGAAGTTGATCGCTGAGCTGCATTGAGTGAGGAagaagtaccagctgctgaaaaggAAGATGGGGATTGTCAGGGTGAGTCCGGCAAAgaaggccctcaactttcaggcagacagacacaaagcgacaggttcaggggaccagagagaggagcctacagtgtccgATCTAGCTGCAAACTCATCTTTCCGGGAtctgctatgagtaagtactgtttcttTAAATAGTGGcagagtttgtgtttgaaaatAATATGATAAACCGCCTGACTGAATCATGTGgcctcatgagattgtaattctagtctaaaatgttgttttttgattaggtgtgtttatcgggggattcaggaagacctgtgagggccccaatccaaattataagcttagggaaaattgtgcctcaaaggtcaagagggGGATGCAATTTTTGAACTACATGGCCaagaatgagacctaccagtcctctctccttttcctgacagaccatgacagAATAAGGCAaaAAACATTGGCGCAATTCTTAAAATATACCAAGGAGACCCCTCCACCTGGCTGCCGGATGACCGTAAACCAATGGAAGGGGATCAACTGGTTGATGAAGGGCATTAAcaagtccatgagacgaccagtttcccttcaccaggtgggggaaGAAAACTAATTGAGAGTATggcatggtccagatgtcgctgacGAAGGTTTTCAGACTTCCTGAAAGCACTCAAGCACTTTCTCTCAGGGGCAAAGAAGGCCCAGCACTTTTTAAATTCCACAaagaacctgcctgcctacctgaggaaggtgtggaaggagaggagTCTGTCCGAAAGTCCTACCTTCACTGACCTGTggacctccattgtcactcatgta

Function

NR:

description
uncharacterized protein LOC110502033

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036315.1 True 2394 mRNA 0.42 3 45296536 45299495

Neighbor

gene id symbol gene type direction distance location
LOC118938961 NA coding upstream 9251 45287169 ~ 45287285 (+)
LOC118938959 NA coding upstream 9608 45286741 ~ 45286928 (+)
LOC110490135 NA coding upstream 100351 45192893 ~ 45196185 (+)
LOC110490134 LOC106602815 coding upstream 122002 45158069 ~ 45174534 (+)
LOC110490132 LOC106602816 coding upstream 144556 45090145 ~ 45151980 (+)
LOC110490137 NA coding downstream 39055 45338550 ~ 45376332 (+)
wnt7ba LOC106575957 coding downstream 279407 45578902 ~ 45595245 (+)
LOC110490148 NA coding downstream 418947 45718442 ~ 45762394 (+)
LOC110490150 LOC106575953 coding downstream 463281 45762776 ~ 45790354 (+)
LOC110490152 LOC106575950 coding downstream 491144 45790639 ~ 45831089 (+)
G1296623 NA non-coding upstream 87522 45208809 ~ 45209014 (+)
G1296611 NA non-coding upstream 105372 45190094 ~ 45191164 (+)
G1296527 NA non-coding upstream 151784 45092436 ~ 45144752 (+)
G1296481 NA non-coding upstream 310064 44986018 ~ 44986472 (+)
G1296689 NA non-coding downstream 24025 45323520 ~ 45323774 (+)
G1297355 NA non-coding downstream 34536 45334031 ~ 45334294 (+)
G1297413 NA non-coding downstream 119925 45419420 ~ 45419642 (+)
G1297416 NA non-coding downstream 130710 45430205 ~ 45430471 (+)
G1297458 NA non-coding downstream 197921 45497416 ~ 45500415 (+)
G1296185 NA other upstream 644457 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 715488 44547179 ~ 44581048 (+)
cblb cblb other upstream 970357 44173352 ~ 44326246 (+)
G1295845 NA other upstream 1266675 44029436 ~ 44029861 (+)
G1295730 NA other upstream 1380057 43916178 ~ 43916479 (+)
G1298452 NA other downstream 954844 46254339 ~ 46260437 (+)
brd1a LOC106575995 other downstream 1014757 46293582 ~ 46316075 (+)
G1299894 NA other downstream 2270335 47569830 ~ 47570663 (+)
G1300598 LOC106575986 other downstream 2646873 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 3060333 48359799 ~ 48360553 (+)

Expression


Co-expression Network