Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110490142 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 45518126 ~ 45552550 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_002468665.2 | False | 2224 | mRNA | 0.42 | 5 | 45518126 | 45552550 |
| TU1480621 | False | 480 | lncRNA | 0.39 | 1 | 45518146 | 45518625 |
| TU1480622 | False | 480 | lncRNA | 0.43 | 1 | 45518206 | 45518685 |
| TU1480624 | True | 3864 | lncRNA | 0.43 | 4 | 45518966 | 45552143 |
45,504,000
45,508,000
45,512,000
45,516,000
45,520,000
45,524,000
45,528,000
45,532,000
45,536,000
45,540,000
45,544,000
45,548,000
45,552,000
45,556,000
45,560,000
45,564,000
45,568,000
45,572,000
45,576,000
NC_048579.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pparaa | NA | coding | downstream | 20131 | 45493665 ~ 45497995 (-) |
| cdpf1 | cdpf1 | coding | downstream | 36310 | 45472681 ~ 45481816 (-) |
| cdkn1ba | LOC106575072 | coding | downstream | 51344 | 45463425 ~ 45466782 (-) |
| LOC110490131 | LOC106602818 | coding | downstream | 445571 | 45038490 ~ 45072555 (-) |
| acadvl | acadvl | coding | downstream | 485018 | 44997734 ~ 45033108 (-) |
| atxn10 | atxn10 | coding | upstream | 45411 | 45597961 ~ 45610166 (-) |
| LOC110490145 | LOC106575954 | coding | upstream | 104305 | 45656855 ~ 45669140 (-) |
| LOC110490151 | NA | coding | upstream | 163441 | 45715991 ~ 45717142 (-) |
| LOC110490153 | LOC106575999 | coding | upstream | 287571 | 45828313 ~ 45889389 (-) |
| creld2 | LOC106575997 | coding | upstream | 701787 | 46254337 ~ 46260490 (-) |
| G1297647 | NA | non-coding | downstream | 12323 | 45505588 ~ 45505803 (-) |
| G1297577 | NA | non-coding | downstream | 15014 | 45495755 ~ 45503112 (-) |
| G1297643 | NA | non-coding | downstream | 22600 | 45495277 ~ 45495526 (-) |
| G1297602 | NA | non-coding | downstream | 85669 | 45432094 ~ 45432457 (-) |
| G1297599 | NA | non-coding | downstream | 89322 | 45428590 ~ 45428804 (-) |
| G1297652 | NA | non-coding | upstream | 3497 | 45556047 ~ 45556297 (-) |
| G1297656 | NA | non-coding | upstream | 12013 | 45564563 ~ 45564870 (-) |
| G1297658 | NA | non-coding | upstream | 14856 | 45567406 ~ 45567669 (-) |
| G1297672 | NA | non-coding | upstream | 39287 | 45591837 ~ 45592513 (-) |
| G1297967 | NA | non-coding | upstream | 77378 | 45629928 ~ 45635192 (-) |
| G1297112 | NA | other | downstream | 563217 | 44949380 ~ 44954909 (-) |
| G1297069 | NA | other | downstream | 641356 | 44861404 ~ 44876770 (-) |
| G1296025 | NA | other | downstream | 1377698 | 44139273 ~ 44140428 (-) |
| G1298047 | kdm5a | other | upstream | 199511 | 45752061 ~ 45762385 (-) |
| G1298177 | NA | other | upstream | 403509 | 45956059 ~ 45989263 (-) |
| G1298541 | LOC106575995 | other | upstream | 744518 | 46295361 ~ 46297952 (-) |
| tafa5a | fam19a5 | other | upstream | 1269713 | 46822067 ~ 46995100 (-) |
| tbc1d22a | tbc1d22a | other | upstream | 1664986 | 47217532 ~ 47405004 (-) |
