LOC110490150 (LOC106575953)


Basic Information

Item Value
gene id LOC110490150
gene name LOC106575953
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 45762776 ~ 45790354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563354.2
ACACCAATATGAAATCAATTTTCTTGCAACAATGCTATGAACTCATTACGTTTTCTTTTGTCTGCCCTCTTTAATTCATTGTTTGGCTTGGTGATAAGTCTAATCGTACAAATATCTAATCGCAGGATTTAAATTCACATTAGTGTTCCATTAGTGTACctgtgcaggggaatgcagtaaAGGTGCGTTAATTGCATGTAATGTGATTCTGAACACATCTGCTTCAGCTACTGTATTTAGGGAAACCCACTAACCAGTGGAAGCAAAGCCAAGTAAAATCCAGTCCTGACCTCCGCTGCTTTCACCCACTCACCTCTTTAAGAGACATGCTCACCAGAGAGGCAAACGTTGATCACGAGACAGGACGTAGGTGATTGCAGTTGGACACTGGATCATTAACCAAAACAAATTGTATAATTAATCTTTGATTCATTTGTTACATGGTCCTGTATGCCTTGTGAATGACTATTTTAAGTGTTTTTAGAATCAACTGACTCAATAAGTGGGAGTATCTAAGAGGGGAGGGGTCATATGGGCAGAGAGTAGATTGGAGGCTGAGCCTAAATTTAGGATTACAACCTCCCACCCCCTATTTGCtcctcatgttaaatactaaaatgTGAATATCTACAGATCAATATTCACTGACTGAGAGCCAAACTTGAGACTTGAGACACCCCATAACAATGAATGTTCAAGCGGGCCTCTCAAATGGCAAGAACAGCAGCAGGTTGAAGGACCTGGTCCCTGTCCCTCAGCCCCAGTCAGAGGAGAAGATGCAGGAGAGGGGGCAATGGAGCAACAAACTGGAGTTCATCCTGTCTGTGATGGGATCCATCATCGGCCTGGGGAACATGTGGCGCTTTCCTTACCTCTGCTACAAGAACGGAGGAGGTGCATTTCTCATCCCCTACCTGATCTTCCTGTTCACCTGTGGCATACCTGTGTTCTTCCTGGAGACTGCTCTGGGCCAGTACACCAGTGAGGGAGGCATCACCTGCTGGAGGAAGATCAGTCCACTCTTTGAGGGTCTTGGCTACGGCACCCAGATCATTGTGGCTCTGCTGAACTCCTACTACATTGTGGTTCTGGCTTGGGGAATCTTCTAcctgtctttctccttctcctgggAACTCCCTTGGTCCTCCTGTAACAACACCTGGAATACAGAAAATTGCGTGGAGTTTCAGAGGAGGAACTATTCTGTCAACTACACCCTGCCCGAAAACTCCACATCCCCCGTCATTGAATTCTGGGAGCGAAGAGCCTTGAGGCTGTCGTCTGGCATCGACCACATGGGCTCTCTGAACTGGGACCTGGCCTTCTGTCTGGCCATCGCCTGGGTCATGTGTTACTTCTGCATCTGGAAAGGGGTCAAATCCACTGGGAAGGTGGTGTACTTCACAGCTACCTTCCCCTACCTGATGCTAATAGTTCTGCTGATTCGTGGCGTCACTTTACCTGGAGCGGACCTAGGGATCAAGTTCTACCTTTACCCTGACCTGTCAAGACTAGCAGACCCTCAGGTATGGATGGATGCAGGCACCCAGATCTTCTTCTCCTATGCAATGTGTCTAGGCTCCCTCATAGCATTGGGGAGTTACAACaagtacaacaacaactgctACAAAGACTGCCTGGCCCTGTGCTTCCTAAACAGTGGGACAAGCTTTGTGGCAGGCTTTGCCATCTTCTCCATCCTGGGTTTCATGGCTTATGAACAGAATGTCCCCATCTCAGAGGTAGCAGagtctgGTCCTGGCCTGGCCTTCATTGCATACCCCCGTGCTGTGGCCATGATGCCGTTTTCTTCACTATGGGCCGTCTTCTTCTTTATCATGATCATCCTGCTAGGGTTGGACAGTCAAtttgtgtgtgtagagagCTTGACAACGGCCATGGTGGACATGTATCCCGAGGTGTTTCGTCGTAAGAACCGCAGGGAGCTCTTTCTGGCTTTAGTGGCCTTCATCTCCTTCCTCATGGGCCTGATCATGTTGATGGAGGGTGGGTTATATGTATTCCAGCTGATGGACTACTATGCTGCTAGTGGCATGTGTCTTCTCTTCATGGCCATCTTTGAGACGGTCTCCATCGCATGGGTCTATGGTGTCGACCGCTTCTATGATAACATCGAAGACATGATTGGCTACCGTCCAGGACCTTACATTAAATACTGCTGGCTGTATGTCACCCCAGCCACATGCGTTGCAACCTTTGCATTCTCCCTCATCAAGTACACCCCTCTGAAGTACAACAATGAGTATGTGTACCCCTGGTGGGGCTATGTGATAGGCTGGCTCCTGGCTCTTGCCTCCATGGTCTGCATCCCTTTCTGGATGATCTACAAACTCTCCACCACAGAAGGAACGTTCAGAGAGCGCATTCACATCCTCCTCCAGCCCTCTAACGACCTACCCAAATccaagagagaacaggagaggatgCTGGCCACCTTTGACCCCAAGGGCGAGGAAGGCATGGAGCCAGTAGGCGTACCAATCAAAGATGGCTACCTCCCAGTGGGGGTGAAGGACTCAAACTGCTAATAAGACCCCAGTGACACCATTGGAGTGACAAATTCAGTTTAGTCATTTTGGGAAAtgaactgaaattccaattcaagaTAAAGTGTATCAGGCAGCCCGATAAGTAATGAGAGAAAGGAACAATTTTGCTCTTTTACACAACCCAATATGCTTTCAGGTATAGAACAAGTCAACTGTTCAATTACAAAAGCTTCTTTCTCATTGTTCAATGGACTCTGATCTCCACATGTATTTTATTGTTGGTCTATTGCCAAGTGATAGATTGTTGTTAGGCCTACTGTATTGTATTCCATGTATTAAAGGAATCATCTCACAGGGCACAATGTCAATTCAACATCTTCCGCGTTGGTTAAGCGTAATTTCAATGACgttacgtggaaacaacattgattcaaccactGTGTGCTCAGTGGGAGAGTAAAGGAAGCTGTACATTACAAATGAGATGAATAACCGTTGATGTTGTTAGAATGTGGATCATTGCTAAACGAAGATGTATTGTGTCATCTTTGTCAATTTAACAAGAGCTAACAACGGTTGGGCTTATAGAAAACGTGTACAATATTTTAATTGATTTTCTGTGTAACATGACTACAAAAGACTGTACAAAATAAATATGAAtctgtatgtttttaaataaacaaaatgTGTAGTATCA

Function

NR:

description
sodium- and chloride-dependent GABA transporter 2-like

GO: NA

KEGG:

id description
K05046 SLC6A13, GAT2; solute carrier family 6 (neurotransmitter transporter, GABA) member 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563354.2 True 3207 mRNA 0.46 15 45762776 45790354

Neighbor

gene id symbol gene type direction distance location
LOC110490148 NA coding upstream 382 45718442 ~ 45762394 (+)
wnt7ba LOC106575957 coding upstream 167531 45578902 ~ 45595245 (+)
LOC110490137 NA coding upstream 386444 45338550 ~ 45376332 (+)
LOC110490136 NA coding upstream 463281 45296536 ~ 45299495 (+)
LOC118938961 NA coding upstream 475491 45287169 ~ 45287285 (+)
LOC110490152 LOC106575950 coding downstream 285 45790639 ~ 45831089 (+)
il17rel LOC106575998 coding downstream 111729 45902083 ~ 45938805 (+)
LOC110490155 pim3 coding downstream 378017 46168371 ~ 46172817 (+)
alg12 alg12 coding downstream 470239 46260593 ~ 46268733 (+)
brd1a LOC106575995 coding downstream 503228 46293582 ~ 46316075 (+)
G1297679 NA non-coding upstream 149867 45612678 ~ 45612909 (+)
G1297675 NA non-coding upstream 150998 45611540 ~ 45611778 (+)
G1297523 NA non-coding upstream 169753 45592824 ~ 45593023 (+)
G1297505 NA non-coding upstream 192907 45569558 ~ 45569869 (+)
G1297500 NA non-coding upstream 202662 45559835 ~ 45560114 (+)
G1297935 NA non-coding downstream 265539 46055893 ~ 46083785 (+)
G1298287 NA non-coding downstream 320950 46111304 ~ 46111572 (+)
G1298293 NA non-coding downstream 324159 46114513 ~ 46114801 (+)
G1298296 NA non-coding downstream 325235 46115589 ~ 46115957 (+)
G1298318 NA non-coding downstream 339892 46130246 ~ 46130475 (+)
G1296185 NA other upstream 1110697 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 1181728 44547179 ~ 44581048 (+)
cblb cblb other upstream 1436597 44173352 ~ 44326246 (+)
G1295845 NA other upstream 1732915 44029436 ~ 44029861 (+)
G1295730 NA other upstream 1846297 43916178 ~ 43916479 (+)
G1298452 NA other downstream 463985 46254339 ~ 46260437 (+)
G1299894 NA other downstream 1779476 47569830 ~ 47570663 (+)
G1300598 LOC106575986 other downstream 2156014 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 2569474 48359799 ~ 48360553 (+)

Expression


Co-expression Network