LOC110490845


Basic Information

Item Value
gene id LOC110490845
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 46717990 ~ 46719108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468765.2
gacaaataaacttttattttattttatttaactattccaagaacagcagcagcagccactGCAGAGCAATCCTCCAGTGCCTGCACCGGAACAGGCGGCGGCAAGCATTCATTAAGCAACACATAATGAGCTATCTGATGAACAGTCTGCACAAAAACCTGTGTACTGGGTCTTCTGGTCAGTCAGCTGATATTAAAGTACACAGATGGAGAGTGGCGCATGCAGATTTTGAAGACTCCTAAGATGCATTGAACTGAAAGAGTGGCAAAAATTATCGGACACCCCAGACAGAGCAAAGGAGCAGAACATCAAAAAGCAAAGGTGGTGTCGTCAGAGACAGGCTTTGGCCAGTTGGTCAAAATTACTCTCTGCTGAAGAGAAGCAGCGATTTGCAGGGGCAAATGAAGACATGATGTCTGATGTGAAGCCAGACCCAGAGGAACCCAATGCATTTTTTTATAACATCCCCACCCTGGTGCTCCCCTGAGTCTGAGAACCTGGTTGAGTCAGCAGACCGGAAAAGGGCAAAGCCTGCTTATGGGGAGAATAGGCTCCATCAGAACGAAACTGGAGCAACCGTCCACCGCAACGCAGAAAGTCTGTTTTTGCAATAGaccacatactggactctacttccactgacaccccaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac
>TU1482189
GAGCAATCCTCCAGTGCCTGCACCGGAACAGGCGGCGGCAAGCATTCATTAAGCAACACATAATGAGCTATCTGATGAACAGTCTGCACAAAAACCTGTGTACTGGGTCTTCTGGTCAGTCAGCTGATATTAAAGTACACAGATGGAGAGTGGCGCATGCAGATTTTGAAGGTGAGCAGTCTCATAAAGacatggactgact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468765.2 False 727 mRNA 0.47 4 46717990 46719108
TU1482189 True 202 lncRNA 0.48 2 46718735 46719045

Neighbor

gene id symbol gene type direction distance location
zbed4 LOC106575996 coding downstream 442328 46268990 ~ 46275662 (-)
creld2 LOC106575997 coding downstream 457500 46254337 ~ 46260490 (-)
LOC110490153 LOC106575999 coding downstream 828601 45828313 ~ 45889389 (-)
LOC110490151 NA coding downstream 1000848 45715991 ~ 45717142 (-)
LOC110490145 LOC106575954 coding downstream 1048850 45656855 ~ 45669140 (-)
tafa5a fam19a5 coding upstream 103148 46822067 ~ 46995100 (-)
tbc1d22a tbc1d22a coding upstream 498424 47217532 ~ 47405004 (-)
gramd4a LOC106575991 coding upstream 773648 47492755 ~ 47559047 (-)
celsr1a LOC106576003 coding upstream 865566 47584674 ~ 47707520 (-)
trmu trmu coding upstream 991086 47710194 ~ 47719547 (-)
G1299068 NA non-coding downstream 2431 46715353 ~ 46715559 (-)
G1299030 NA non-coding downstream 28464 46689011 ~ 46689526 (-)
G1299011 NA non-coding downstream 44634 46672953 ~ 46673356 (-)
G1298988 NA non-coding downstream 70036 46647646 ~ 46647954 (-)
G1298927 NA non-coding downstream 145671 46572120 ~ 46572319 (-)
G1299078 NA non-coding upstream 4968 46724076 ~ 46724359 (-)
G1299083 NA non-coding upstream 6667 46725775 ~ 46726006 (-)
G1299086 NA non-coding upstream 8244 46727352 ~ 46727589 (-)
G1299090 NA non-coding upstream 10887 46729995 ~ 46730256 (-)
G1299131 NA non-coding upstream 38479 46757587 ~ 46757817 (-)
G1298541 LOC106575995 other downstream 420038 46295361 ~ 46297952 (-)
G1298177 NA other downstream 728727 45956059 ~ 45989263 (-)
G1298047 kdm5a other downstream 955605 45752061 ~ 45762385 (-)
G1297577 NA other downstream 1214878 45495755 ~ 45503112 (-)
cdpf1 cdpf1 other downstream 1236219 45472681 ~ 45481816 (-)
si:dkeyp-27e10.3 LOC106576037 other upstream 2116486 48822973 ~ 48839311 (-)
G1302602 NA other upstream 2944843 49663951 ~ 49664296 (-)

Expression

LOC110490845 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC110490845 Expression in each Bioproject

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LOC110490845 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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Co-expression Network