cerk (LOC106575992)


Basic Information

Item Value
gene id cerk
gene name LOC106575992
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 47412437 ~ 47443051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944453.1
CATGGTGCAGTTGGTGAAAAGCAACTGCAGCaactatataaaaaaaactgCATGACCTTAATCACAATTTTTATCATTCACGCAGTCGAGATGTAATTGCTAGTCAAACAATTTGtacaaccataacacaacacactttGAAAGAAGGTATCCAACAGTGCTCAATGGCTAGACAAAAAAATGATCTGCTCGAACGCGCCCGCTCTCTCATTTTGCCTGTCAGCAAAACATTGTTGAGCGATTGAGTTTATGCAACGTGTTTACCTCGGCGTACTGTGAAACACTACACATTGTAACAATGCTCATAAGTGAATTCTTCATTATGGTAGATCAACCAACGTTATTGTCAACGCAACTTTTTTACAAGAACAGGGTTGTAGAAGTGACTCTGAACCGCGTTATGTTGGGATTTTGGAAGGAGATTGAGACGAGGAGAAAACGCTCTGCGAGCTTCAATTGTATTTCTAAAGATGCAGACCACCATTTTCTCCTGGTGTCTGAGATAGTTGGTGCCAGAGagaccaaagaagaagaagaccaaacaaacaaagATGGTGGAAGGAAGCATAGAGTTCTGTTGTATCCGTATGCATTTACAGTGTCCTACACGGAGAGGACCAAACATCACTGCTGGCGGTGTAAAGACATCATCTTCCATTGCTTAGACGAGGCACAGCGTCAACAGTGGGTCCAGACAATCAACAACCAGCTCTCACTACTCAGCATCCGACCGAAACGCTTGCTAGTGTACATCAATCCCTACAGTGGGAAACAACGCGGGAAGTGGATTTACGAGCAGAGAGTAGCCCCACTCTTCTCTCGAGCCTCCATCTCCACCGACGTGATCGTTACGGAGAGTGCCAATCATGCCAGGGATCACTTGAAGACGGAGGTAGATCTGAAGCAATGTGACGGggtggtgtgtgtgggaggggacgGGATGTTCAGCGAGGTTGTCCACGGCCTGGTCTCTAGGACCCAGAGTGATTCCAGAGTGGACCAGAACCAACCGAACCAGGACCTGGTTCCATGTGCGCTCCGCATCGGAATCATCCCTGCAgGTTCGACTGACTGTATCTGCTATTCTACCACAGGCACCAACGATCCAGTGACTTCAGCCCTGCACATCATCATGGGTGACTCCCAGCCCATGGATGTGTGTTCTGTCCATCACAACAACACCTTCCTCAGGTACTCCGTCTCGCTGCTCGGATACGGTTTCTACGGCGACGTGCTGACAGACAGCGAGAGGAAGCGCTGGATGGGGCCTTCCAGATACGACTTCTCGGGCCTAAAGACATTCCTGACCCATCAGTATTATGAAGGGACTGTCGCTTTCCTGCCCGCTGAGGACAACCTGGGGAACCCTAGAGACAAGATCAAGTGCATGACTGGGTGCCATATCTGTGAGCTGGGTGCCAACAATGGGCAGCTCCTCTCAGGGGATCATGTCGACAAGATGGCTGAAGAGAACTCTGACAAGGAGACCAGTGGTGATGGTGTATGGCGGGTGATCCGGGGGAAGTTCCTAGCAATCAACGCTGCCAGTATGAGCTGTGCCTGTCCTCGCAGCCCTAGAGGCCTGTCGCCCTATGCCCACCTGGCCGACGGCACCACAGACCTCATCCTGTTTGACATGTCCTTTGTGGAGGTTCACCGTGTGCGCCGCTTCCGTTTTGTTCCAAAGCAAAGCAACGGGATCTCAGAGGTGGACCTGAGTGAGACCAGTGGGAAGAAGATCTGTAACCAGGTCTGTACGGCCCATCCCAACAACGACACGGGCCATAGCAACTGGAACTGTGATGGGGAGATCTTGCCTCATGCGGATATACAAGTGAGtgttCACTGCCAGCTGATCAGACTATTTGCCCGAGGTGTCGAGAGGAGGACCACGTTTGACACTTACACATGGTCTGTAATAGAGGGATCAAGTCTCTCGTGGCAAGCTTAGGGGGACCAACTGTCCCCAATTGTGCTAGAAAGTCCTGCATTTGGaccctttatccctccatcctgCAACCACACATGCAAGTcctgcattttttattttttctatttataactttcattctttttttttaaagtcagttGGTCACGTATTTCAGACTTCCCATTTATTTGAGGAGAACTGCCATCAGCTTGCGCTTTTGACCAGACATATAGGCTGTCATATGGCGCTTTCCCTTCCCAGTCAAGTATCTTTCCTGATGCATCTCCCCTCCTGAGCTTAAGCGAGTATCTGCCGCAATTACACCAGATTGCAGTACAGGTTTCCAAGAATATGGAGACCCATAATGAGATGAACGAAAAGGAGGAATCTGTTCTATGTACCTCCAATCAAAGTATGTGACTGATGTTCTGTGTGGGCATCCAAAGACAATGCGATGGGGAAGTGGAAATCACCAAGCTAGACTGTCGGTAATGCCTCACTGCTTCTGCGTATCGCTGTGATACAATGTGAGGGCAGAGAAACTCCTGGGCAATCAGAGGTCCCTAAGTGATTTTGCTTTTCCCAGGAAGTTTCGCACCTGTGGCACAGAGCTACAGTTAGTCTATTTTGAAGTTATTTAGTTAAGACTAGTAGCCCCCCTCactagtgtggggggggggggggggggggggggggggggctgctgccAGTGGGTTGTCCTCTGTGTGTAGGGTAATGTCTTTGTGTGAGTGCCATCATAATGAGTTAGCTCCGTTACAATTATACACCAGACCGCCATCAGACAGATGCTGCTTCCTGCAGCCAAAACATCAGCCAactctaggacacacacacacacacacatctatcatCTGCCACTGTGAAACCACACACAGACCTAAACTCTCAACACTGTGGGAGGCTCGGCCTGTTCTTTCGGAAGCCTCTCCACGATCATTACTGGTTGCTGCGAAAGGCCATGATTATATTTCAACTCTGAGCTGTGAGTGAATCAGGTCTATGTGGCTGTCCCTTTCTGATGAACTGGCTGATGTTTCTTTGCTGTACAATGGATATATCTGTGTGGAACCAAACGGTGTCAGCCCCCCGCTGACTCGCTAAGCCAGCTGACGTGGGGGAACGTTTTGACAAACACATGAGTTCTGCTGAAGGTTTTATAATGACCAAATATTTATGTAAACCATTCATCTTGCGGGTCTCAAGATGACACGACACACTGTGTGTAACGAACCTGTGATGTGGATTTGATAAGGTTTGAATATGTATGAATGTTTGGATACAGCTTAATTAAAGTGCTTTTAAACTAA
>XM_036944452.1
GGTGCAGTTGGTGAAAAGCAACTGCAGCaactatataaaaaaaactgCATGACCTTAATCACAATTTTTATCATTCACGCAGTCGAGATGTAATTGCTAGTCAAACAATTTGtacaaccataacacaacacactttGAAAGAAGGTATCCAACAGTGCTCAATGGCTAGACAAAAAAATGATCTGCTCGAACGCGCCCGCTCTCTCATTTTGCCTGTCAGCAAAACATTGTTGAGCGATTGAGTTTATGCAACGTGTTTACCTCGGCGTACTGTGAAACACTACACATTGTAACAATGCTCATAAGTGAATTCTTCATTATGGTAGATCAACCAACGTTATTGTCAACGCAACTTTTTTACAAGAACAGGGTTGTAGAAGTGACTCTGAACCGCGTTATGTTGGGATTTTGGAAGGAGATTGAGACGAGGAGAAAACGCTCTGCGAGCTTCAATTGTATTTCTAAAGATGCAGACCACCATTTTCTCCTGGTGTCTGAGATAGTTGGTGCCAGAGagaccaaagaagaagaagaccaaacaaacaaagATGGTGGAAGGAAGCATAGAGTTCTGTTGTATCCGTATGCATTTACAGTGTCCTACACGGAGAGGACCAAACATCACTGCTGGCGGTGTAAAGACATCATCTTCCATTGCTTAGACGAGGCACAGCGTCAACAGTGGGTCCAGACAATCAACAACCAGCTCTCACTACTCAGCATCCGACCGAAACGCTTGCTAGTGTACATCAATCCCTACAGTGGGAAACAACGCGGGAAGTGGATTTACGAGCAGAGAGTAGCCCCACTCTTCTCTCGAGCCTCCATCTCCACCGACGTGATCGTTACGGAGAGTGCCAATCATGCCAGGGATCACTTGAAGACGGAGGTAGATCTGAAGCAATGTGACGGggtggtgtgtgtgggaggggacgGGATGTTCAGCGAGGTTGTCCACGGCCTGGTCTCTAGGACCCAGAGTGATTCCAGAGTGGACCAGAACCAACCGAACCAGGACCTGGTTCCATGTGCGCTCCGCATCGGAATCATCCCTGCAgGTTCGACTGACTGTATCTGCTATTCTACCACAGGCACCAACGATCCAGTGACTTCAGCCCTGCACATCATCATGGGTGACTCCCAGCCCATGGATGTGTGTTCTGTCCATCACAACAACACCTTCCTCAGGTACTCCGTCTCGCTGCTCGGATACGGTTTCTACGGCGACGTGCTGACAGACAGCGAGAGGAAGCGCTGGATGGGGCCTTCCAGATACGACTTCTCGGGCCTAAAGACATTCCTGACCCATCAGTATTATGAAGGGACTGTCGCTTTCCTGCCCGCTGAGGACAACCTGGGGAACCCTAGAGACAAGATCAAGTGCATGACTGGGTGCCATATCTGTGAGCTGGGTGCCAACAATGGGCAGCTCCTCTCAGGGGATCATGTCGACAAGATGGCTGAAGAGAACTCTGACAAGGAGACCAGTGGTGATGGTGTATGGCGGGTGATCCGGGGGAAGTTCCTAGCAATCAACGCTGCCAGTATGAGCTGTGCCTGTCCTCGCAGCCCTAGAGGCCTGTCGCCCTATGCCCACCTGGCCGACGGCACCACAGACCTCATCCTGGTACGCAAGGCCTCTCGCCTCGACTTCCTCCGACACCTCATGCGACACACCAACAAGGACGACCAGTTTGACATGTCCTTTGTGGAGGTTCACCGTGTGCGCCGCTTCCGTTTTGTTCCAAAGCAAAGCAACGGGATCTCAGAGGTGGACCTGAGTGAGACCAGTGGGAAGAAGATCTGTAACCAGGTCTGTACGGCCCATCCCAACAACGACACGGGCCATAGCAACTGGAACTGTGATGGGGAGATCTTGCCTCATGCGGATATACAAGTGAGtgttCACTGCCAGCTGATCAGACTATTTGCCCGAGGTGTCGAGAGGAGGACCACGTTTGACACTTACACATGGTCTGTAATAGAGGGATCAAGTCTCTCGTGGCAAGCTTAGGGGGACCAACTGTCCCCAATTGTGCTAGAAAGTCCTGCATTTGGaccctttatccctccatcctgCAACCACACATGCAAGTcctgcattttttattttttctatttataactttcattctttttttttaaagtcagttGGTCACGTATTTCAGACTTCCCATTTATTTGAGGAGAACTGCCATCAGCTTGCGCTTTTGACCAGACATATAGGCTGTCATATGGCGCTTTCCCTTCCCAGTCAAGTATCTTTCCTGATGCATCTCCCCTCCTGAGCTTAAGCGAGTATCTGCCGCAATTACACCAGATTGCAGTACAGGTTTCCAAGAATATGGAGACCCATAATGAGATGAACGAAAAGGAGGAATCTGTTCTATGTACCTCCAATCAAAGTATGTGACTGATGTTCTGTGTGGGCATCCAAAGACAATGCGATGGGGAAGTGGAAATCACCAAGCTAGACTGTCGGTAATGCCTCACTGCTTCTGCGTATCGCTGTGATACAATGTGAGGGCAGAGAAACTCCTGGGCAATCAGAGGTCCCTAAGTGATTTTGCTTTTCCCAGGAAGTTTCGCACCTGTGGCACAGAGCTACAGTTAGTCTATTTTGAAGTTATTTAGTTAAGACTAGTAGCCCCCCTCactagtgtggggggggggggggggggggggggggggggctgctgccAGTGGGTTGTCCTCTGTGTGTAGGGTAATGTCTTTGTGTGAGTGCCATCATAATGAGTTAGCTCCGTTACAATTATACACCAGACCGCCATCAGACAGATGCTGCTTCCTGCAGCCAAAACATCAGCCAactctaggacacacacacacacacacatctatcatCTGCCACTGTGAAACCACACACAGACCTAAACTCTCAACACTGTGGGAGGCTCGGCCTGTTCTTTCGGAAGCCTCTCCACGATCATTACTGGTTGCTGCGAAAGGCCATGATTATATTTCAACTCTGAGCTGTGAGTGAATCAGGTCTATGTGGCTGTCCCTTTCTGATGAACTGGCTGATGTTTCTTTGCTGTACAATGGATATATCTGTGTGGAACCAAACGGTGTCAGCCCCCCGCTGACTCGCTAAGCCAGCTGACGTGGGGGAACGTTTTGACAAACACATGAGTTCTGCTGAAGGTTTTATAATGACCAAATATTTATGTAAACCATTCATCTTGCGGGTCTCAAGATGACACGACACACTGTGTGTAACGAACCTGTGATGTGGATTTGATAAGGTTTGAATATGTATGAATGTTTGGATACAGCTTAATTAAAGTGCTTTTAAACTAA

Function

NR:

description
ceramide kinase-like isoform X1

GO: NA

KEGG:

id description
K04715 CERK; ceramide kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944453.1 False 3258 mRNA 0.49 12 47412437 47443051
XM_036944452.1 True 3321 mRNA 0.49 12 47412440 47443051

Neighbor

gene id symbol gene type direction distance location
brd1a LOC106575995 coding upstream 1096362 46293582 ~ 46316075 (+)
alg12 alg12 coding upstream 1143704 46260593 ~ 46268733 (+)
LOC110490155 pim3 coding upstream 1239620 46168371 ~ 46172817 (+)
il17rel LOC106575998 coding upstream 1473632 45902083 ~ 45938805 (+)
LOC110490152 LOC106575950 coding upstream 1581348 45790639 ~ 45831089 (+)
srr LOC106575990 coding downstream 275867 47717685 ~ 47723038 (+)
alg10 LOC106575988 coding downstream 290468 47733519 ~ 47736943 (+)
LOC110490177 NA coding downstream 556077 47999128 ~ 48001885 (+)
LOC110490734 LOC106576001 coding downstream 675723 48118774 ~ 48146269 (+)
slco1d1 LOC106575962 coding downstream 704021 48147072 ~ 48161884 (+)
G1299769 NA non-coding upstream 64752 47347385 ~ 47347685 (+)
G1299737 NA non-coding upstream 109813 47301449 ~ 47302624 (+)
G1299709 NA non-coding upstream 159475 47251292 ~ 47252962 (+)
G1299688 NA non-coding upstream 183383 47228733 ~ 47229054 (+)
G1299686 NA non-coding upstream 187417 47224802 ~ 47225020 (+)
G1299840 NA non-coding downstream 49735 47492786 ~ 47495801 (+)
G1299893 NA non-coding downstream 125483 47568534 ~ 47568819 (+)
G1300334 LOC105030512 non-coding downstream 294330 47737381 ~ 47737608 (+)
G1300346 NA non-coding downstream 315033 47758084 ~ 47758394 (+)
G1298452 NA other upstream 1152000 46254339 ~ 46260437 (+)
G1296185 NA other upstream 2760358 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 2831389 44547179 ~ 44581048 (+)
cblb cblb other upstream 3086258 44173352 ~ 44326246 (+)
G1299894 NA other downstream 126779 47569830 ~ 47570663 (+)
G1300598 LOC106575986 other downstream 503317 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 916777 48359799 ~ 48360553 (+)
G1301200 NA other downstream 1141656 48584707 ~ 48585263 (+)
G1301458 NA other downstream 1486995 48930046 ~ 48930588 (+)

Expression


Co-expression Network