Gene
RNA
| Item | Value |
|---|---|
| gene id | srr |
| gene name | LOC106575990 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 47717685 ~ 47723038 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| mitochondrial tRNA-specific 2-thiouridylase 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021563386.2 | False | 1510 | mRNA | 0.47 | 7 | 47718918 | 47723038 |
| XM_021563387.2 | False | 1518 | mRNA | 0.46 | 7 | 47719545 | 47723038 |
| TU1483537 | True | 305 | lncRNA | 0.47 | 3 | 47717685 | 47719159 |
47,710,000
47,711,000
47,712,000
47,713,000
47,714,000
47,715,000
47,716,000
47,717,000
47,717,000
47,718,000
47,719,000
47,720,000
47,721,000
47,722,000
47,723,000
47,724,000
NC_048579.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cerk | LOC106575992 | coding | upstream | 275867 | 47412437 ~ 47443051 (+) |
| brd1a | LOC106575995 | coding | upstream | 1402843 | 46293582 ~ 46316075 (+) |
| alg12 | alg12 | coding | upstream | 1450185 | 46260593 ~ 46268733 (+) |
| LOC110490155 | pim3 | coding | upstream | 1546101 | 46168371 ~ 46172817 (+) |
| il17rel | LOC106575998 | coding | upstream | 1780113 | 45902083 ~ 45938805 (+) |
| alg10 | LOC106575988 | coding | downstream | 10481 | 47733519 ~ 47736943 (+) |
| LOC110490177 | NA | coding | downstream | 276090 | 47999128 ~ 48001885 (+) |
| LOC110490734 | LOC106576001 | coding | downstream | 395736 | 48118774 ~ 48146269 (+) |
| slco1d1 | LOC106575962 | coding | downstream | 424034 | 48147072 ~ 48161884 (+) |
| LOC118938805 | NA | coding | downstream | 452406 | 48175444 ~ 48179144 (+) |
| G1299893 | NA | non-coding | upstream | 150099 | 47568534 ~ 47568819 (+) |
| G1299840 | NA | non-coding | upstream | 223117 | 47492786 ~ 47495801 (+) |
| G1299825 | NA | non-coding | upstream | 281363 | 47429613 ~ 47437555 (+) |
| G1299822 | NA | non-coding | upstream | 293060 | 47425647 ~ 47425858 (+) |
| G1299821 | NA | non-coding | upstream | 294329 | 47424368 ~ 47424589 (+) |
| G1300334 | LOC105030512 | non-coding | downstream | 14343 | 47737381 ~ 47737608 (+) |
| G1300346 | NA | non-coding | downstream | 35046 | 47758084 ~ 47758394 (+) |
| G1300348 | NA | non-coding | downstream | 39231 | 47762269 ~ 47762483 (+) |
| G1300363 | NA | non-coding | downstream | 63947 | 47786985 ~ 47787191 (+) |
| G1300367 | NA | non-coding | downstream | 68822 | 47791860 ~ 47792167 (+) |
| G1299894 | NA | other | upstream | 148255 | 47569830 ~ 47570663 (+) |
| G1298452 | NA | other | upstream | 1458481 | 46254339 ~ 46260437 (+) |
| G1296185 | NA | other | upstream | 3066839 | 44649701 ~ 44652079 (+) |
| G1296266 | LOC106602826 | other | upstream | 3137870 | 44547179 ~ 44581048 (+) |
| G1300598 | LOC106575986 | other | downstream | 223330 | 47946368 ~ 47947892 (+) |
| kiss2 | kiss2 | other | downstream | 636790 | 48359799 ~ 48360553 (+) |
| G1301200 | NA | other | downstream | 861669 | 48584707 ~ 48585263 (+) |
| G1301458 | NA | other | downstream | 1207008 | 48930046 ~ 48930588 (+) |
| G1301706 | NA | other | downstream | 1672185 | 49395223 ~ 49396921 (+) |
