srr (LOC106575990)


Basic Information

Item Value
gene id srr
gene name LOC106575990
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 47717685 ~ 47723038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563386.2
AGCTGTCTGCTTAGCCGGGCTACAACTGTTCCAATTATACAGATTTAACAATCATCTAATTAAGGAGGATACCTACGTGAACACTTCGTGCCAGTACTCTTTGACGTAGGACACTTGATGGAAAGcatggtggatgtgccACTATCAGTGAAAGCCATCACTTTGGATCTGCTAAGAGATgccagagagacagtgaggaccAGTCCTTTGGGAGTCATCAACACTCCTATGATCCCATGGTGCCAAACAACACTACCGCTCAACATCCCCTGTAACATCCACATCAAACTGGAGAACATGCAGAGAACTGGTTCGTTTAAGATAAGAGGAGTGGCCAACCAGTTTGCCAGAAGACCAAAAGGAGCCCATTTTGTCACCATGTCTGCAGGGAACTATGGGAAGTCTTTTGCATATGCCTCTAAACACTACGGCTCCAAGGGGAAAGTGGTGATGCCAGAGACAGCCCCTGTATCCAGATCTACACTCATACAAAATTTTGGATGTGAGGTGGAACGGGTGCCTACAACCTGTCTGATGAACGTGGTGAATCGTTGTGTCCAGGAGGAAAACATGACGTTCCTCCACTCATATGACGACCTGGACCTGATTGCAGGACATGCCAGTCTAGGTTTTGAAGTACTGGAGGTGATGCCCCAGcctgatgtagtggtggtgtgctgtggaggaggaggtctacTGGCTGGGGTGGCTGCTGCCATCAAATTGGCCGGCTGCGAGAAGACAAGGATCTATGGGGTAGAGCCAGAAGGAGCCTGCACCATGTACAAAAGTTTCATCGAGAAGAAGCCTGTAGGCATGGACACCAAGAGCATCGCGTCAGGACTGGCTCCACCTTTTGCAGGCACCCTGCCCTACGAGCTGTGCCAGCGCTACGTTGAGGAGATCGTACTGGTGAGCGATGAGGAGATAAAGGCTGCCGTGTCTACCCTGTACAGGGCTGGGCTCCTAGTGGAGCCGTCAGGGTCCGCGGCATTCGCAGCCATCGCTAACGACAGAATCCCTGACATTGCTGGGAGGAACGTGGTGGTCATCCTCAGTGGAGGAAACATCGGCAAAGACGAGCTCACTAACTTCCCTGATTGAATATCTAGTTACTTACATACTTAGGAATTGTTCTACTCCTGAAGCATAGGCCACAAACAACAGTTTTCCAGCGTATTTAGTCCCGGGTGATTTGTTCACGTTCTCCTCATGCGTTTCCCCATTGAATATTCACAAAGTTATTATAAAAGTGACTACTACAGAGAATAAATAATGATTATTCCAACCAGTCTGAGTTAGGAGAAATGATGCATTATTATTTTACTACATTGACTGTTACAGAGAAGAAAGAATGACCATTGCTCTAACCAGCTAAAGATAGGTGCAAATCATGCATTATTTTTTCTCACTAATACTTTTTATACTGTGATAGTATCTTTTTGCAAATAAACTATGCAATGTATTCAGTATCAGGAACATATGCTGTGTTTGATCACTGAAATGTCAA
>XM_021563387.2
GTCGCGTGTGGCTACCTCCAGAATAACTGTAACACTGTGTAAACATAACCTGAGCTTTTGAAATTCTGCTCCGTAAATTGGATACAAATCTCGAAAATCCACACATTTGCATATATTTTTCGAAAGTATCAAGcatggtggatgtgccACTATCAGTGAAAGCCATCACTTTGGATCTGCTAAGAGATgccagagagacagtgaggaccAGTCCTTTGGGAGTCATCAACACTCCTATGATCCCATGGTGCCAAACAACACTACCGCTCAACATCCCCTGTAACATCCACATCAAACTGGAGAACATGCAGAGAACTGGTTCGTTTAAGATAAGAGGAGTGGCCAACCAGTTTGCCAGAAGACCAAAAGGAGCCCATTTTGTCACCATGTCTGCAGGGAACTATGGGAAGTCTTTTGCATATGCCTCTAAACACTACGGCTCCAAGGGGAAAGTGGTGATGCCAGAGACAGCCCCTGTATCCAGATCTACACTCATACAAAATTTTGGATGTGAGGTGGAACGGGTGCCTACAACCTGTCTGATGAACGTGGTGAATCGTTGTGTCCAGGAGGAAAACATGACGTTCCTCCACTCATATGACGACCTGGACCTGATTGCAGGACATGCCAGTCTAGGTTTTGAAGTACTGGAGGTGATGCCCCAGcctgatgtagtggtggtgtgctgtggaggaggaggtctacTGGCTGGGGTGGCTGCTGCCATCAAATTGGCCGGCTGCGAGAAGACAAGGATCTATGGGGTAGAGCCAGAAGGAGCCTGCACCATGTACAAAAGTTTCATCGAGAAGAAGCCTGTAGGCATGGACACCAAGAGCATCGCGTCAGGACTGGCTCCACCTTTTGCAGGCACCCTGCCCTACGAGCTGTGCCAGCGCTACGTTGAGGAGATCGTACTGGTGAGCGATGAGGAGATAAAGGCTGCCGTGTCTACCCTGTACAGGGCTGGGCTCCTAGTGGAGCCGTCAGGGTCCGCGGCATTCGCAGCCATCGCTAACGACAGAATCCCTGACATTGCTGGGAGGAACGTGGTGGTCATCCTCAGTGGAGGAAACATCGGCAAAGACGAGCTCACTAACTTCCCTGATTGAATATCTAGTTACTTACATACTTAGGAATTGTTCTACTCCTGAAGCATAGGCCACAAACAACAGTTTTCCAGCGTATTTAGTCCCGGGTGATTTGTTCACGTTCTCCTCATGCGTTTCCCCATTGAATATTCACAAAGTTATTATAAAAGTGACTACTACAGAGAATAAATAATGATTATTCCAACCAGTCTGAGTTAGGAGAAATGATGCATTATTATTTTACTACATTGACTGTTACAGAGAAGAAAGAATGACCATTGCTCTAACCAGCTAAAGATAGGTGCAAATCATGCATTATTTTTTCTCACTAATACTTTTTATACTGTGATAGTATCTTTTTGCAAATAAACTATGCAATGTATTCAGTATCAGGAACATATGCTGTGTTTGATCACTGAAATGTCAA
>TU1483537
GGCATAGTGGCCTGTCGCCATGGCATCAGCTCCCAAGCCGTTGATGGCATAATTGTAGAAGTGGTTGAATTTGATGTGTTTGTTGCACAGAATGTCTGGATTTGGTGTCCTGCCCTTCTCATATTCCTTCAAAAGATTGGTGAACACTTCGTGCCAGTACTCTTTGACGTAGGACACTTGATGGAAAGGTATGTCCAGATTCTGGCACACTTTGTAGGCATCTTCACAGTCCTTTTCGGATGAACACACCCCATTCTCATCCAGGGAATCCCAGTTCTTCATAAACACTCCAGTAACGTGGTACC

Function

NR:

description
mitochondrial tRNA-specific 2-thiouridylase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563386.2 False 1510 mRNA 0.47 7 47718918 47723038
XM_021563387.2 False 1518 mRNA 0.46 7 47719545 47723038
TU1483537 True 305 lncRNA 0.47 3 47717685 47719159

Neighbor

gene id symbol gene type direction distance location
cerk LOC106575992 coding upstream 275867 47412437 ~ 47443051 (+)
brd1a LOC106575995 coding upstream 1402843 46293582 ~ 46316075 (+)
alg12 alg12 coding upstream 1450185 46260593 ~ 46268733 (+)
LOC110490155 pim3 coding upstream 1546101 46168371 ~ 46172817 (+)
il17rel LOC106575998 coding upstream 1780113 45902083 ~ 45938805 (+)
alg10 LOC106575988 coding downstream 10481 47733519 ~ 47736943 (+)
LOC110490177 NA coding downstream 276090 47999128 ~ 48001885 (+)
LOC110490734 LOC106576001 coding downstream 395736 48118774 ~ 48146269 (+)
slco1d1 LOC106575962 coding downstream 424034 48147072 ~ 48161884 (+)
LOC118938805 NA coding downstream 452406 48175444 ~ 48179144 (+)
G1299893 NA non-coding upstream 150099 47568534 ~ 47568819 (+)
G1299840 NA non-coding upstream 223117 47492786 ~ 47495801 (+)
G1299825 NA non-coding upstream 281363 47429613 ~ 47437555 (+)
G1299822 NA non-coding upstream 293060 47425647 ~ 47425858 (+)
G1299821 NA non-coding upstream 294329 47424368 ~ 47424589 (+)
G1300334 LOC105030512 non-coding downstream 14343 47737381 ~ 47737608 (+)
G1300346 NA non-coding downstream 35046 47758084 ~ 47758394 (+)
G1300348 NA non-coding downstream 39231 47762269 ~ 47762483 (+)
G1300363 NA non-coding downstream 63947 47786985 ~ 47787191 (+)
G1300367 NA non-coding downstream 68822 47791860 ~ 47792167 (+)
G1299894 NA other upstream 148255 47569830 ~ 47570663 (+)
G1298452 NA other upstream 1458481 46254339 ~ 46260437 (+)
G1296185 NA other upstream 3066839 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 3137870 44547179 ~ 44581048 (+)
G1300598 LOC106575986 other downstream 223330 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 636790 48359799 ~ 48360553 (+)
G1301200 NA other downstream 861669 48584707 ~ 48585263 (+)
G1301458 NA other downstream 1207008 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1672185 49395223 ~ 49396921 (+)

Expression


Co-expression Network