alg10 (LOC106575988)


Basic Information

Item Value
gene id alg10
gene name LOC106575988
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 47733519 ~ 47736943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563388.2
GCTTCTGTACGGACTACCTTCCACTGACGGGACCACCAAACTGTCAAAAAATGTAACTCTTCCGTTCGCTTTTTAGCTAGATTAAAATATCTgtattttttgtcattttttatacatttcatCTGTAGTTAACATGAAATTAAACGTATGTTGCGTACACCATATATAAATATCTAGCTAATTTTAGATTGATTTTCGCGTTCGTTCGGGAATTTCTAGGTGAAGATGGAGAAATTCGAAGGGTACATTTTCACTGCTCTCTGCAGCACCAACTTTTTGGTTTCATGTCTCCTTTTCTCCAAAATAACTCGGGAGCAAAGGGAGCCCTACATGGACGAAATATTTCACGTCCGTCAAGCTCAGAAATACTGCTACGGGAAGTTCAACGAGTGGGACCCAATGATCACCACGCTTCCTGGCCTGTACCTGGCGTCAGTGGGCGTGATCAAGCCAGTGGTGTGGCTCGTGGACCTCACGGGGAAGGTAGTGTGTTCTACCGCAATGCTGCGCTTCATCAACCTCCTCTTCAACTGTGGCATCCTCTACCTGCTCTATCTCATCATCTGCAAGCTCCACCTCAAAGAGAAGACTAAGACGGCCTCTCGCAGAGTTCTCTCAGCCCTGTCCCTGTCTACCTTCCCCGTGCTCTACTTCTTCAACTTCCTTTACTACACAGATGCCGGATCTACTTTCTTCATCCTCTTCACGTACCTCATGACCCTGTATGGCTGTCACAAAGCCTCGGCACTCCTCGGCGTCTTCGCCATATTCTTCCGCCAGACAAACATCATCTGGGTGGCGTTCTGTGCCGCCACGGTGGTGGCCAACAAGATGGATGAAACCTGGAGGACGGAACAGTCAAAGAAGAAGGATGACAAGTTGCCCTGTCAGATACCTTTCTCCGTAAGTGGGGTGAAGAGAGTGATGCGTTTCCTGTTGGAATTCCTGACCACAGCCAATCACGTGAAGGCTGTGACGCTAGTCGCGTGGCCGTACATTCTTGTTGCCGTGGGTTTTATCGCGTTCATCGTGTTGAATGATGGGATTGTAATCGGGGACAGAACCAGTCACGAGGCCTGTCTCAACTTCCCTCAGCTCTTCTACTTCTTCTCCTTTGCCCTCTTCTTCTCCATCCCCACGTCGCTGTGCTACCACCGAGCTATCCGCTTCCTCCAGACCCTCAAGAAGCAGCCACTGCTCTACTTAGTGATCACAGGACTCTGCCTGCTCCTAGTGTGGAAGTTCACCTTCGTGCACAAGTACCTCCTGGCTGACAACAGACACTTCCCCTTCTATGTGTGGAAGAGGATCTTCCAGAAGCACGAGGCGGTGCGTTTTGCCCTCATCCCGGCATACGTGTTTGCAGCGTGGAACTTCGTGGACACTCTGAAATCCCGGTCGTTGTTCTGGATCCTGGCGTTCCTGGTGTGTCTGCTGGCGGCCACAGTGCCTCAGAAGCTGCTAGAGTTCAGGTACTTTATTGTTCCGTACCTGCTCTACCGCCTCCACATGCCCCTGCCCTCCCTCACCAGACTGGTGCTGGAGTTCCTGCTCTATACAGCCGTCAACGCAGCCACACTCTACATCTTCGTCAACAAGACTTTTCAATGGCCAAATAGTCCGGCTGTACAGAGGTTTATGTGGTAGCCTGACCTGAACAGGAGGAACCCAGTCATTTGGAAAAACTATAGGTTATACTTTTTCTATTTTAAATgagtagggccaggagtttttcctgttGTGATGAGATCATACtcaggaaaaaaaaaacatggcccaACATGTGAGAGAATGCATTTCATGTGAAGAATACTTTGAAAAGCACAAGACGTTTATAATCTACATTTGAACTGTGATTTGTACATTGAATTATGTAATTTGGATGGAGGAAGAGgccaaaaaaatgtaaaagccaAATTGTAAAGCAGCAAtctgtgtattatactgtatggttaaaaaaaaaagttttctgcAAATGAAGAACATTCATGACTTATCTTAATTTAACTCTATGGTAGAGTTATAcgaaatgatgtggctctctttGTAAACATACAACATCCCTGACTGTAttcaaataaattaatttgtCTGTATTTCCCTATTCTATACTGGAAATAGCATCCATaaacaatgtaaacaaacatCTGTGTTTACATTCTGCTGCAATATTCTGAAGAGTAAAGCTGTGATATACAATGGGTTAGAATCATCTTTTTtctttctactgtattttagatTATCTCAATCCTGCCCCCAACTGCGATCCCTTGAATAATGTTCTTGAACTTCTTTGTGTTTCTTGAGTGTGTTTGGTTGCCCTAAAATTGCAGAATCCTTCTCTGTCCTTTAGGCCTAAGATATCATCCAGTAGCTTAACTATTCAAGTCAGTTTATTCAATCATTGTCTTTAATAACACATGTAGATTCTTCAAAAGTAGTGTGTACATTAGCTTCAGAAATGTTTATTTGGTCAGAATTGATTACTTTAACCTGTATTTTCTACCTGCATCGTTACCTGTCTGTTGCTGATCTTTTATTGTCCCTGTATGGCTGTCCCTGGGCTGAAATGATCAAATGAAGTGACGCAATAAAATTATTAATGTCATA

Function

NR:

description
putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K03850 ALG10; alpha-1,2-glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563388.2 True 2610 mRNA 0.44 3 47733519 47736943

Neighbor

gene id symbol gene type direction distance location
srr LOC106575990 coding upstream 10481 47717685 ~ 47723038 (+)
cerk LOC106575992 coding upstream 290468 47412437 ~ 47443051 (+)
brd1a LOC106575995 coding upstream 1417444 46293582 ~ 46316075 (+)
alg12 alg12 coding upstream 1464786 46260593 ~ 46268733 (+)
LOC110490155 pim3 coding upstream 1560702 46168371 ~ 46172817 (+)
LOC110490177 NA coding downstream 262185 47999128 ~ 48001885 (+)
LOC110490734 LOC106576001 coding downstream 381831 48118774 ~ 48146269 (+)
slco1d1 LOC106575962 coding downstream 410129 48147072 ~ 48161884 (+)
LOC118938805 NA coding downstream 438501 48175444 ~ 48179144 (+)
LOC110490846 LOC106576099 coding downstream 527538 48264481 ~ 48267175 (+)
G1299893 NA non-coding upstream 164700 47568534 ~ 47568819 (+)
G1299840 NA non-coding upstream 237718 47492786 ~ 47495801 (+)
G1299825 NA non-coding upstream 295964 47429613 ~ 47437555 (+)
G1299822 NA non-coding upstream 307661 47425647 ~ 47425858 (+)
G1300334 LOC105030512 non-coding downstream 438 47737381 ~ 47737608 (+)
G1300346 NA non-coding downstream 21141 47758084 ~ 47758394 (+)
G1300348 NA non-coding downstream 25326 47762269 ~ 47762483 (+)
G1300363 NA non-coding downstream 50042 47786985 ~ 47787191 (+)
G1300367 NA non-coding downstream 54917 47791860 ~ 47792167 (+)
G1299894 NA other upstream 162856 47569830 ~ 47570663 (+)
G1298452 NA other upstream 1473082 46254339 ~ 46260437 (+)
G1296185 NA other upstream 3081440 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 3152471 44547179 ~ 44581048 (+)
G1300598 LOC106575986 other downstream 209425 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 622885 48359799 ~ 48360553 (+)
G1301200 NA other downstream 847764 48584707 ~ 48585263 (+)
G1301458 NA other downstream 1193103 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1658280 49395223 ~ 49396921 (+)

Expression


Co-expression Network