LOC110490177


Basic Information

Item Value
gene id LOC110490177
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 47999128 ~ 48001885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468673.2
actattattctacaatgtataaaatagtacaaataaagaaaaaacccttgaatgagtaggagtgtccaagcttttgactggtactgtatgtatgtcaaTTCGTCCCAGCAGCTAATTTTAAGAAGGGTATGCCTAAGATATATCTCAAGGAGGAAGTACCGACAACATCTACCAGAGATGTGAATGAACCGCAGAGCCGAGGCCCTGAACCTGATTTCTTGACTCATGTAATTACAGGCAGCAGCATTACATCAGGTGTCTAATGCCACCTAGTGGCAGAATTGGAATAATTTCAGAGCTGAACAGTGATGATGATATAACGCAGTACCATTTAGCAGAcgtttttatccaaagcgacttaagAGTCATGCGTGCAAACATTTGACATACGGGAGATCCTGGGAATtcaacccactatcctggcattgcaagtaccatgctctaccaactgagccacgggACCTGATTAGGGTATGATAATAGGTAAAGGTAAGGGGGAAATGTGTTAATATGGTGAAGGCCAGCCTGTTTCGTTGTTACGTCTGTATTCCAACAGGTTTCCAACTGCACTGATGTCAGCTCatgtaggtttccacactacattcaAAAAATCACCTGCTGTTCACCACCTGTCTGACACTGATAGGCCgagtcccaagtggcaccctattccctatatagtgccacaTGAGGaataatagggtgtcatttgggacgcagcccccGGTGGAGACTTACCTGCAGACGTGTCTTCAGCTTGTCCTGCAAACACTCACCATGGTCCTAAGGAATGCTGTGAATCATCGCCCAGTTACTCTCCCAAGAGGGAGGTTGCTTTAGTTCCGACTCGAATGATGACGAGGTGAAGGATTATCACCAGTGTCGCCAGGGTGGATCCTCACAGGCACATTCAGAGAGGTCCTGTTGTGAAGAGATCCCTGTCCTCAGCCAAGGCCTCATCACATTGGAACACACAACAACGGGGTCACCCTCCGTCTCAACCCAGACCTTACACCCCACCAACTAGGCCTCAATGAACAGGGAACTGTGGAAACGGCCAGAGCGGTCATAGAGACCAGAGAGCGTTGGAGAGCTCCGACTCCACAGAGAGAGACGGTCAGGCTGTGTGGTTACAGATGACAGTAACAGCCAGGCTAGGGTTATAGGCGATCGGTAGGTCCCACCTCGTCCTCTGTCTGAATCACAGAGCTCTGCGGTCCACCAACAAAAATGGCAGCCACCAGAACACAAGCAACACAAGAAACACGAGAATGGGGACACAGACTGTCACCAACATCACCTCGAAATGTCCAACATCGGATGTTTCAACTCGGTGCAGTTTCTGGACTTGAGTGTAAAGAGAACAACCTTGTGGACTCTGAATCCCACAACTATTCTGCTTAAAATGTCATACCGATCCCAGCCAACAGAGGGCAGGCCCGTCACAGAGATGAGTCTAtgagacaacagacagacagacagcattatCAGACAGatccaggagggagggagaagagcaCACGCCCTGGAGAAAATCAACAGCCAGAGAGCTCAAGGCTGGACCTGGGCACCACCCATCAATCATCCCTTTAAACAAATGCACTCTGAGAATAGAGTGCATTCAGAGACCCACTACCTCTGTACTAGACGCTCCCCTCGTCACCAATGATGTAAAAGACTTGAGAGGTAAGCAGTTGCAGAATAAAGGACAGGAAGAAGAATAAGAGGTACAGGACCCTGTTCAGAATGTTCCTCTTAGAGGAGACCttccagatgagagagagagagaggagagaaaaggaggtcACTGCTGAGAGCATAGTTAACAGGCTTTCAGAGGAGGTTGAGACACTTCAGGAAAGAGCAGGCGTTCTGCTCATGCTGAAGCAGAGGAAAAAAGATTAGTgaaaagggaaggagaggagagaggtggggaggacaggagaggaggggaggtcaAATCCCGACGTATCCCTTTTAAGAGTTGTGAACAACCCTAGCAACTACAGTACATCCCCTTTACCACAGGATCTGTTTCTGCATATTTCAACATTTATAACAATGCCCTTGTGGATTCTACATTAAAACGAAAGCCAGACATTGCAAGA

Function

NR:

description
PREDICTED: uncharacterized protein C12orf40 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468673.2 True 2108 mRNA 0.48 3 47999128 48001885

Neighbor

gene id symbol gene type direction distance location
alg10 LOC106575988 coding upstream 262185 47733519 ~ 47736943 (+)
srr LOC106575990 coding upstream 276090 47717685 ~ 47723038 (+)
cerk LOC106575992 coding upstream 556077 47412437 ~ 47443051 (+)
brd1a LOC106575995 coding upstream 1683053 46293582 ~ 46316075 (+)
alg12 alg12 coding upstream 1730395 46260593 ~ 46268733 (+)
LOC110490734 LOC106576001 coding downstream 116889 48118774 ~ 48146269 (+)
slco1d1 LOC106575962 coding downstream 145187 48147072 ~ 48161884 (+)
LOC118938805 NA coding downstream 173559 48175444 ~ 48179144 (+)
LOC110490846 LOC106576099 coding downstream 262596 48264481 ~ 48267175 (+)
pyroxd1 pyroxd1 coding downstream 298717 48300602 ~ 48308741 (+)
G1300629 NA non-coding upstream 2040 47996712 ~ 47997088 (+)
G1300615 NA non-coding upstream 19841 47975647 ~ 47979287 (+)
G1300585 NA non-coding upstream 64332 47933386 ~ 47934796 (+)
G1300583 NA non-coding upstream 66451 47932427 ~ 47932677 (+)
G1300580 NA non-coding upstream 67778 47931125 ~ 47931350 (+)
G1300695 NA non-coding downstream 108202 48110087 ~ 48110338 (+)
G1300711 NA non-coding downstream 179589 48181474 ~ 48212419 (+)
G1300714 NA non-coding downstream 181120 48183005 ~ 48225469 (+)
G1300736 NA non-coding downstream 188114 48189999 ~ 48216406 (+)
G1300734 NA non-coding downstream 188591 48190476 ~ 48220807 (+)
G1300598 LOC106575986 other upstream 51236 47946368 ~ 47947892 (+)
G1299894 NA other upstream 428465 47569830 ~ 47570663 (+)
G1298452 NA other upstream 1738691 46254339 ~ 46260437 (+)
G1296185 NA other upstream 3347049 44649701 ~ 44652079 (+)
kiss2 kiss2 other downstream 357943 48359799 ~ 48360553 (+)
G1301200 NA other downstream 582822 48584707 ~ 48585263 (+)
G1301458 NA other downstream 928161 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1393338 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 1396573 49398275 ~ 49410313 (+)

Expression


Co-expression Network