slco1d1 (LOC106575962)


Basic Information

Item Value
gene id slco1d1
gene name LOC106575962
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48147072 ~ 48161884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563406.2
GGACGACCTGAATGTCGACATGATCAAAGAGTTCACATGAGTGGTGGCCGGCGGGTTACTGATTACTGTAGAATGGATGTTAGAGTTTCAGCCAATCAACATCCAGGATCCAAACTACCTGGGCTAATAATGCCTCTTTAAGATAAAGGTTTGCTTTTCAACCAAAGTCCTGTCAGTGAAATCCTCTGCTGCTCTAacacatctctccatctcctcgtgGGACCTCTGCTACTGAACTGGTCCGCTGGTTCACTCTACATGTACCTGTGTCAACCGCGGAGGTCATCATGAGTGTTGAAACTAAGGCGCCCCGGGTGCCTTGCTGCTCCAAACTGAAGCTGTTCCTGATTTCCCTGTCCTTTGTGTATTTCGCAAAAGCCTTCGGGGGAAGCTACATGAAGAGTTCTGTCACCCAGATAGAGAGACGTTTCGACATCCCCAGCTCACTTATAGGAGTCATCGATGGCAGCTTTGAGATTGGTAACCTGCTGGTGATAGCCTTTGTGAGCTACTTTGGGGCGAAGCTCCACAGGCCCAGACTGATAGGGATTGGCTGTCTCATTATGGCTGCTGGGGCCTTCCTAACGGCTCTGCCACACTTCTTCCAGGGACAGTATGTATATGAAACAACCCTGTCACATATACCTGAGGAAAACTCGACAGAAAGTATTCTGCCTTGTCTGGCCAACACGAGTCATCTGGTCATAAATGATCTGTCTACAGCTGCGAGTAAAGCAGCGTGTGAGAAGGAGGCAGGCTCATCCATGTGGATCTATGTATTCCTGGGTAACATGCTGCGAGGGATCGGAGAGACGCCTGTCATGCCTTTAGGAGTGTCCTATCTGGACGACTACGCCAGAAAGGAGAACACTGCCATCTACCTTGCGTGTTTACAGACTGTTGGCATCCTGGGGCCTGTATTTGGCTTCATGTTTGGCTCCTTCTGTGCCAAGATCTACGTGGACATTGGCTCTGTGGATTTAGAGAGCATCTCCATCAACCACAAGGACTCTCGCTGGGTGGGGGCCTGGTGGTTAGGCTTCCTGGTTTCTGGCTTCCTGATGCTCCTGGCTGGGATTCCATTTTGGTTCCTCCCCAATACTCTGGCTAAGCAGTGCAAGAGCCCCAGCAAAAAGAGACAGAAGGAGGACATACAGGCAAAGAGCTCCTCTGACACCCCAGAGGTGGAGCCGGAGCAGGGCAGTTTCCTACCGGAGGACAACACTGAGGAGGATGCACCACAGCCTGTCACCATGGCTGCCATGGCTAAAGATTTTGCGCCGTCCCTGAAAAGGCTGTTCAGCAACAAAGTCTACCTGCTGATCATCCTGACGTCCGTGGTGGCATTCAATGGCTTCATAGGGATGATCACCTTCAAACCCAAGTTCATGGAGCAGGTCTACGGGCAGTCTCCCTCCAAGGCAATCTTCTTGATAGgtTCGATGAACCTGCCTGCGGTGGCAGTTGGGGTCATCGTGGGAGGCTTGGTGATGAAGCGGTTCAAGCTGAGCGTTCTGGGAGCCGCCCGACTCTCCAtcgtctcctccttcctctccttctgccTCCTGCTCATCCAGTACTTCCTACAGTGTGACAACTCAGAGGTGGCTGGCCTCACCATGACCTATCAAGGGGCTACAGAGGTGTCTTACCAGCAGGAGAGCTTGCTATCTCAGTGTAACATGGGCTGCTCCTGTTCCCTGAAACACTGGGACCCTGTGTGTGCCAGAAATGGCATCACCTATGCCTCCCCCTGTCTTGCTGGCTGCCAGACCTCCACGGGCGTAGGCAAGGAGATGGAGTTCCATAACTGCACATGTATGCAGGAGCTGAAGGGGGGGCTGATGGCTCCACCAACCAACATGTCCGCCATCTTGGGACAGTGCCCCAGGAAGAGTGATTGTGACAGGATGTTTAAGTTCTACATGGCTGTCACTGTCCTGGGGGCCTTCGTCTCTGCCTGCGGGGGCACATCTGGATATATCGTCTTGCTCAGaTCTATACACCCAGATTTAAAATCACTGGCTCTTGGGATGCATACATTGATAGGCAGAACTCTGGgtggAATCCCTCCCCCTATCTACTTTGGAGCTTTGATTGACAGGACGTGTCTGAAGTGGGGATTGAAGCGATGTGGGGGTCAAGGAGCATGCAGATTCTACGACTCACATGCATTCAGAATAACGTTCCTGGGTCTGGTCTATTGTCTGTACGGCCTGGCCAACCTGCTGTGGGGGGTGCTGTACCTGCAACTGTCCAAGCGGCAGAAGAAGTTGGAACTGCGAAGCCAGGCCAAGGCTACAGCCCTGGAGGCCAATGGGAACAACAATCCCAATGGACATGCCATGGTCAGCATCTTTAAGAACAAAGATGACCTGGACAGGGACAATGAGAGCACCATCTGAGATACCAGAGAGATTTCCAAAACAAATGGTTTTTGATCCTGTATTGTGCCATGCCCATGATCCACCTGAAGTGTTTTTTGTGGTATTTGGTGACTTGTCGAATGaacaagtacatttttttttgccaCAACTCGGTACAGTCTTAAGCCAAGCCCCAGTACATTGGTAGGAATTGGTCGCTATTTGTGAAACTGATTTTGCTGCTAGATCTGTTCGACCAAAGCCCTGATATATTTACCATCCTCTCAATGTTATTAATGCAGTATTCAATATATAAGATCCCAATGAAGTATTCCTCCCATGTGAGTTATTATGAATAGTTTTCCAACCACAGGCCGCACCTATTACCTACCTGTCTCTATCtccccctttcccacctgaaggACCGTTGTACATACTATAAACTAAAAACCTCTTACAAGTTCTTTCGAAACTTAATTTCTGTCCTATTTCGATTTCTCTCTTgttatacacagtgccttgcaaaagtattcagacccattgtatttcttcacattttattgtgttacaaagtggattaaaatgtatgtaaaaaca

Function

NR:

description
solute carrier organic anion transporter family member 1C1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563406.2 True 2963 mRNA 0.50 15 48147072 48161884

Neighbor

gene id symbol gene type direction distance location
LOC110490734 LOC106576001 coding upstream 803 48118774 ~ 48146269 (+)
LOC110490177 NA coding upstream 145187 47999128 ~ 48001885 (+)
alg10 LOC106575988 coding upstream 410129 47733519 ~ 47736943 (+)
srr LOC106575990 coding upstream 424034 47717685 ~ 47723038 (+)
cerk LOC106575992 coding upstream 704021 47412437 ~ 47443051 (+)
LOC118938805 NA coding downstream 13560 48175444 ~ 48179144 (+)
LOC110490846 LOC106576099 coding downstream 102597 48264481 ~ 48267175 (+)
pyroxd1 pyroxd1 coding downstream 138718 48300602 ~ 48308741 (+)
LOC110490186 LOC106576018 coding downstream 166913 48328797 ~ 48332219 (+)
LOC110490188 LOC106566434 coding downstream 174247 48336131 ~ 48337866 (+)
G1300695 NA non-coding upstream 36734 48110087 ~ 48110338 (+)
G1300629 NA non-coding upstream 149984 47996712 ~ 47997088 (+)
G1300615 NA non-coding upstream 167785 47975647 ~ 47979287 (+)
G1300585 NA non-coding upstream 212276 47933386 ~ 47934796 (+)
G1300583 NA non-coding upstream 214395 47932427 ~ 47932677 (+)
G1300711 NA non-coding downstream 19590 48181474 ~ 48212419 (+)
G1300714 NA non-coding downstream 21121 48183005 ~ 48225469 (+)
G1300736 NA non-coding downstream 28115 48189999 ~ 48216406 (+)
G1300734 NA non-coding downstream 28592 48190476 ~ 48220807 (+)
G1300748 NA non-coding downstream 57826 48219710 ~ 48221403 (+)
G1300598 LOC106575986 other upstream 199180 47946368 ~ 47947892 (+)
G1299894 NA other upstream 576409 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 1831070 46293582 ~ 46316075 (+)
G1298452 NA other upstream 1886635 46254339 ~ 46260437 (+)
G1296185 NA other upstream 3494993 44649701 ~ 44652079 (+)
kiss2 kiss2 other downstream 197944 48359799 ~ 48360553 (+)
G1301200 NA other downstream 422823 48584707 ~ 48585263 (+)
G1301458 NA other downstream 768162 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1233339 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 1236574 49398275 ~ 49410313 (+)

Expression


Co-expression Network