LOC118938805


Basic Information

Item Value
gene id LOC118938805
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48175444 ~ 48179144 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036099.1
ACATTCAGATAACTTGTGACTAGAGACCAACGTTTTTCTGGGTCACTCAAGTCATGTGGACAAGAAAAATGCCAGGCCCCATTTGAGATGGAAATATAATCCTGTGCCTATCTCTTATGATGGACATTTCTATACAGGGGCGATACATTCTATACCGGGCCGTCTAACTGTAAAGAATAAAGACTTAAAGCATTCACATAACACAAACCAGAAAATGTAACCGTGTTGTATGTTTTTCTCTTATAGTTTCAAGTTTCACACCGTCATACCGTACTTTCTGCTTCTGTGTGGCAGCATCCAGAAGTTCAACTCAATCATTGGCCTGCTCATGTTCAAAGCCAAGTACATGGAACAGCAGTTTGGCCAATCAGCAGCCAGAGCCAACTTCCTCATTTGTTAGAAAATGTAGCTACATGTTTCTCAATCACCTACCATCTTTATAAACCAACTATGGCCTCTCCGTCGCGTTTCCTTCTGGTCCTTTCTCATTGTGAAGTCAAACTCTATTGGTTGGATTGGGCCTGAGGTTTAGGTCAGAGACAAGGGCTGTGCTTAGACAGGCAGCCCACTTATGATATTTTATCCATTAATTGGCCTTTTGACatatcacatcagatattttcgcATTAGCTTCTTTTCAGAGCATATcagattggtcaaaagaccaaataCCAGGGATGCAAACTAGTCACCTTTCGGTGAATCAAAAATAGGTAACATGCATGATTCGAGTAGAGCTGATGAGAAACGTTTGGGAGGGAGGTCTTTGGACCACTACTGGCTGTAAGCAAATTACTGATGCGCATTTGGagcaatactggctgtatccaaggctcagtCAATCATTCACATTACAACAGAATGCAGCATGTaactgaagagagaagagacaactaacttgctagttacagcatcagcgctCGCTCTGGAAAGACAGCAGAGTGTGGAAAGGCCGTTTGCCAGTTACAGCAGCGCGTCCCCTGAACGATAACGAAGAGGTAGCagagaagcctgaccacggagactggggtgagaaggtgatgaagTGTACTTCATGACCTGTAATCGAAAAACAatggcatttggaaagtttgagAGTGTAACAGAGGCTGCTCCTGCTTGGCTGGGGAGTGGGACCCTGTGTGCTCAGACAAACTGCATCACCTACAACTTCCCCTGCCTGGCAATCTGCTCCAGCTTTACAGGATACAGCAAGCACACGAGTGATCTTCCTTTCCCTCATCACATGTCTCGGTGGCTCCTCCTACTTTTCATCATCGCAGTCATTACACTTCGGGAGGGGGACAGCCCCCACACTCATTGCTAaagatcgaacttcagactctCCCCAAAACAACTGAACCCCACAACAAACCGAAAGAGATTTAAGGTGCACACCCCTAAAGAGGTAGCCAGAACAGGATATCTCCCTCCAAGCTCACAAAGACAcaggaggaggaactatccaacacccagggagagagaacgagtgaCCTCAGtcaaacacagacagaaagaagaggcgttagatagaggGTACCCCAGATGCCATTCCTCCTGCTCATGTGAGCAAGGAAAGAGATGACAAGCCTTCTGATCAGGCCAACAGGCAGGCCAagggagaggtcatagtgattcacacccacagagagaaagacaacccacacaacctattggctgagatgaaccacacagaggtagaggcagagggccttcagggctagccagtcagccagcccgctctgatcctcaagtcagTTGTAtttaaattcatgttcattaaagatttttattcaagatTTGAAAAGTCCCATTTACTTAATGATATCTTTTCACTGTCTGCAACCCTCAAGAACCAGGGTGAGTCTGGGTCACCCTTTTACTGGgcaaacacaacttgcatatcGTCATAGACTAGGCCAAAATGTTCATCTTTTAACCTTGCTTGAATAAAACATGCATTTTTTTATAGTGCGCGAGAGTTGCGctttttccttttctatgatgattaaaggttttggttgcacctcaactcAACGTTGGTTGAGCTCCctccgttttttgttgttgtcaaatactactttttttgttttgtttacatgTAGTAAGTAAATtattaaaagcattaaaattg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036099.1 True 2134 mRNA 0.44 3 48175444 48179144

Neighbor

gene id symbol gene type direction distance location
slco1d1 LOC106575962 coding upstream 13560 48147072 ~ 48161884 (+)
LOC110490734 LOC106576001 coding upstream 29175 48118774 ~ 48146269 (+)
LOC110490177 NA coding upstream 173559 47999128 ~ 48001885 (+)
alg10 LOC106575988 coding upstream 438501 47733519 ~ 47736943 (+)
srr LOC106575990 coding upstream 452406 47717685 ~ 47723038 (+)
LOC110490846 LOC106576099 coding downstream 85337 48264481 ~ 48267175 (+)
pyroxd1 pyroxd1 coding downstream 121458 48300602 ~ 48308741 (+)
LOC110490186 LOC106576018 coding downstream 149653 48328797 ~ 48332219 (+)
LOC110490188 LOC106566434 coding downstream 156987 48336131 ~ 48337866 (+)
kiss2 kiss2 coding downstream 180655 48359799 ~ 48360553 (+)
G1300695 NA non-coding upstream 65106 48110087 ~ 48110338 (+)
G1300629 NA non-coding upstream 178356 47996712 ~ 47997088 (+)
G1300615 NA non-coding upstream 196157 47975647 ~ 47979287 (+)
G1300585 NA non-coding upstream 240648 47933386 ~ 47934796 (+)
G1300583 NA non-coding upstream 242767 47932427 ~ 47932677 (+)
G1300711 NA non-coding downstream 2330 48181474 ~ 48212419 (+)
G1300714 NA non-coding downstream 3861 48183005 ~ 48225469 (+)
G1300736 NA non-coding downstream 10855 48189999 ~ 48216406 (+)
G1300734 NA non-coding downstream 11332 48190476 ~ 48220807 (+)
G1300748 NA non-coding downstream 40566 48219710 ~ 48221403 (+)
G1300598 LOC106575986 other upstream 227552 47946368 ~ 47947892 (+)
G1299894 NA other upstream 604781 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 1859442 46293582 ~ 46316075 (+)
G1298452 NA other upstream 1915007 46254339 ~ 46260437 (+)
G1296185 NA other upstream 3523365 44649701 ~ 44652079 (+)
G1301200 NA other downstream 405563 48584707 ~ 48585263 (+)
G1301458 NA other downstream 750902 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1216079 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 1219314 49398275 ~ 49410313 (+)

Expression


Co-expression Network