LOC110490846 (LOC106576099)


Basic Information

Item Value
gene id LOC110490846
gene name LOC106576099
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48264481 ~ 48267175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564282.2
gtgagaAACCACTGACAGTAGCCTGTGTCTGTCTTAGGATCCACTGGCGATTGGGTTTAACTACTGAGGGGATCTCGCGTGCACGATGTGTCACCTGAAGAAGCCCGTGTTCCTTCTCGTGCCTCTCGTGCTGCTGCGCTGTGTCGCCACCGCCCCTAGCAACAGGTACTTCACCTCATCTAGTGAGCAGGAAAGCGCGCTCCCGGACAGAGAAGGCTGGCTCGTGCCCGGGATCGTCTCCAACCCCTTCCTCGGCCTCATTGCCGCACGACTACAGAGAGGGCTCACATCTGTCAACAGCCACCACATAGAGAAAAGGAAGTGCAACACAGCTACCTGTGTGACCCAGCGACTGGCCGACTTCCTGACCCGCTCCAGCAACACCATCGGCACGGTGTACGCCCCCACCAACGTAGGCTCCAGCACCTACGGGAAACGGGATCTAGTGCAGCCGCCGGGCTATCTGCCTCTCTAGTCATGCATGGGTGGAAGCCCACAGATGTAGGATATGCTCAGCTGAAATGACCACACCACCTTGTATAGGCTGATGTATACGTTTCAAAACAACAACGATGGTTATGAATCATTAACTCGAGTTTTTGGGGTTattttataaacttcagaagaaaaaaaaaagcagtGCCTTTTGGTGTGGAATAATAACAAAGAAGTATTTGTTACACAAATCAGACTAGAGGCGGATGAGATACTTGTCTCTGTTCTGTGACCCCAACAGGTTCGACCCCACAATTGCATGTGAATAAAATGtcatgtaaaaaaagaaaaaaaagtaaaCAGGTGCATAAGGCATATAAAATACACGTTTTGtccttctgtttgtctgttgtgtaggttattattttttatttttttt

Function

NR:

description
calcitonin related peptide-like

GO: NA

KEGG:

id description
K08039 IAPP; islet amyloid polypeptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564282.2 True 874 mRNA 0.48 4 48264481 48267175

Neighbor

gene id symbol gene type direction distance location
LOC118938805 NA coding upstream 85337 48175444 ~ 48179144 (+)
slco1d1 LOC106575962 coding upstream 102597 48147072 ~ 48161884 (+)
LOC110490734 LOC106576001 coding upstream 118212 48118774 ~ 48146269 (+)
LOC110490177 NA coding upstream 262596 47999128 ~ 48001885 (+)
alg10 LOC106575988 coding upstream 527538 47733519 ~ 47736943 (+)
pyroxd1 pyroxd1 coding downstream 33427 48300602 ~ 48308741 (+)
LOC110490186 LOC106576018 coding downstream 61622 48328797 ~ 48332219 (+)
LOC110490188 LOC106566434 coding downstream 68956 48336131 ~ 48337866 (+)
kiss2 kiss2 coding downstream 92624 48359799 ~ 48360553 (+)
LOC110490738 LOC106576023 coding downstream 166583 48433758 ~ 48441874 (+)
G1300752 NA non-coding upstream 8035 48227136 ~ 48256446 (+)
G1300730 NA non-coding upstream 14371 48249256 ~ 48250110 (+)
G1300754 NA non-coding upstream 22682 48229713 ~ 48241799 (+)
G1300712 NA non-coding upstream 33572 48222596 ~ 48230909 (+)
G1300750 LOC106568775 non-coding upstream 35197 48222155 ~ 48229284 (+)
G1300923 NA non-coding downstream 2771 48269946 ~ 48270171 (+)
G1300931 NA non-coding downstream 6019 48273194 ~ 48273489 (+)
G1300957 LOC106566433 non-coding downstream 77644 48344819 ~ 48349516 (+)
G1300967 NA non-coding downstream 93540 48360715 ~ 48360941 (+)
G1300953 ldhb non-coding downstream 95562 48362737 ~ 48367701 (+)
G1300598 LOC106575986 other upstream 316589 47946368 ~ 47947892 (+)
G1299894 NA other upstream 693818 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 1948479 46293582 ~ 46316075 (+)
G1298452 NA other upstream 2004044 46254339 ~ 46260437 (+)
G1296185 NA other upstream 3612402 44649701 ~ 44652079 (+)
G1301200 NA other downstream 317532 48584707 ~ 48585263 (+)
G1301458 NA other downstream 662871 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1128048 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 1131283 49398275 ~ 49410313 (+)

Expression


Co-expression Network