LOC110490186 (LOC106576018)


Basic Information

Item Value
gene id LOC110490186
gene name LOC106576018
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48328797 ~ 48332219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563418.2
AATACAACCTGAAAACATTTTCCATCCGTAAAATGGACGTGTATGTAGGCAGGGAATATATTTTCCAGCAACTAACTAGTTATATTCAGCAGATAAGTGCTCtccttatttttttaattaacgTTTTTATACAACCCTTTAGAATGTTGAATGCAACCCTGAATTTGTCCGGAAGAATGATCtttttgatgaaaccaagaaggCGTGTTTCCGGAAGACGTGGCTAGTGCTACAGTGGCAGCACCTGAACTTGTATTTTAGTAAACTACAATTGACAGTGTCAACTTTTATATTTTACAAGCTGTTGATTCATTGTCAAAATGATCTCTTTAACGGACTCACAGAAGATCGGAATGGGACTAACGGGCTTCGGCGTGTTTTTCCTCTTCTTTGGAATGATACTGTTTTTTGACAAAGCCCTCCTTGCCATAGGAAATATCCTGTTTGTGGCTGGCCTGTCATTTGTGATCGGTTTGGAGAGGACGTTCCGGTTCTTCTTCCAAAAACACAAGATGAAGGCAACTAGCTTCTTCCTGGGTGGAGTGTTGATCGTTCTTATTGGCTGGCCAATTGTGGGAGTGGTCCTAGAGGTCTATGGATTTTTCCTTTTATTCAGGGGTTTCTTCCCAGCGGCAGTAGGCTTCATCAGAAGGATACCCTTCCTGGGCTCCCTGCTAAACCTCCCATTCATCAGTGGGttcgTGGACAAAGTGGGAGAGAGCAACACCATGGTATAACAGTGACTTTTTGTTTATGGAGAAAAACAATCTATTATATTTATGATACAGTTGTTCTCATCAAGCCACGTAACCCCCATTGGTCAATTGCTTACCTCCAACAGTTAGCTAGGTAACTTTCATGAGACTTTGTAAATTGATACCTCTTCCCATGTAAAGGGAAAACAATCCACTTTTTTTGTATCTTGATTCTGCAATTTTAAGGTCCGTACCAGCCAAGGGTACCAGTCCTGGTTGCTACGGGCAACTGTTACTAATGAATCTGGAGTTGGTTAAGATGGCTACCCCAGAATTGTTACGTGTTATTGAATGCTGCTCTCCTCTACTGGAGTACTCCCCACAAGGAGGAGAGTCCCTCTACCGGACTGAAGAGAACCCGTGTCCATTTTGGCACTCACACTCTACTATTGAATGTACAGACAAACTCACCATGTCATCGCCTCTGGACAACCTCAAGAGGTGTGGCGGAGGAGAGCTGGTCCTATTGTTACACTGTAGATGGGCCAGGGGGTTTTCCTAGTgctgtgctgtcttgccaaaaaATGAACTAGGGGTTAGCGagatggcacaaacagatcttAGACCATGTTAGGGTTTCCTGACCATATGACCAGACCAGGGAAAACTCGAAGCCGTAGTTGAAGGTGGTTTCCTGGTCAGGTATTGGAAAGACTCCTGGTCCTACTTATGGTGCCTGTGCTTTCTCACACTGGACTGAAACTTGAGTCCTGGGGAAGAAAATAGCTTTACTTTCCTTTTCTCTCACGCCCGTTATGATTACCGGATCTGGCAGTTGCATATTTCCCCCTTATTTTTCTGCCGTTTCTGTGTATGACTGGTTGAGGAAGCTCTGTAGATACATTTTGTATTTTAAATTTCAAGAGCAACATTTGAGTTGGAATTTTATCAATGTTAACTATAGTAATGGAGGGTACTGAATGGGATATGACAATGGTTTTACAAAGTTTTGTCTGACACTTTAATAAAGAAAACGTGCCATTG
>XM_021563419.2
AATACAACCTGAAAACATTTTCCATCCGTAAAATGGACGTGTATGTAGGCAGGGAATATATTTTCCAGCAACTAACTAGTTATATTCAGCAGATAAGTGCTCtccttatttttttaattaacgTTTTTATACAACCCTTTAGAATGTTGAATGCAACCCTGAATTTGTCCGGAAGAATGATCtttttgatgaaaccaagaaggCGTGTTTCCGGAAGACGTGGCTAGTGCTACAGTGGCAGCACCTGAACTTGTATTTTAGTAAACTACAATTGACAGTGTCAACTTTTATATTTTACAAGCTGTTGATTCATTGTCAAAATGATCTCTTTAACGGACTCACAGAAGATCGGAATGGGACTAACGGGCTTCGGCGTGTTTTTCCTCTTCTTTGGAATGATACTGTTTTTTGACAAAGCCCTCCTTGCCATAGGAAATATCCTGTTTGTGGCTGGCCTGTCATTTGTGATCGGTTTGGAGAGGACGTTCCGGTTCTTCTTCCAAAAACACAAGATGAAGGCAACTAGCTTCTTCCTGGGTGGAGTGTTGATCGTTCTTATTGGCTGGCCAATTGTGGGAGTGGTCCTAGAGGTCTATGGATTTTTCCTTTTATTCAGGGGTTTCTTCCCAGCGGCAGTAGGCTTCATCAGAAGGATACCCTTCCTGGGCTCCCTGCTAAACCTCCCATTCATCAGTGGGCCTTCATAATTAACTCTGAGGACAATCCGCTGTCTTGttcgTGGACAAAGTGGGAGAGAGCAACACCATGGTATAACAGTGACTTTTTGTTTATGGAGAAAAACAATCTATTATATTTATGATACAGTTGTTCTCATCAAGCCACGTAACCCCCATTGGTCAATTGCTTACCTCCAACAGTTAGCTAGGTAACTTTCATGAGACTTTGTAAATTGATACCTCTTCCCATGTAAAGGGAAAACAATCCACTTTTTTTGTATCTTGATTCTGCAATTTTAAGGTCCGTACCAGCCAAGGGTACCAGTCCTGGTTGCTACGGGCAACTGTTACTAATGAATCTGGAGTTGGTTAAGATGGCTACCCCAGAATTGTTACGTGTTATTGAATGCTGCTCTCCTCTACTGGAGTACTCCCCACAAGGAGGAGAGTCCCTCTACCGGACTGAAGAGAACCCGTGTCCATTTTGGCACTCACACTCTACTATTGAATGTACAGACAAACTCACCATGTCATCGCCTCTGGACAACCTCAAGAGGTGTGGCGGAGGAGAGCTGGTCCTATTGTTACACTGTAGATGGGCCAGGGGGTTTTCCTAGTgctgtgctgtcttgccaaaaaATGAACTAGGGGTTAGCGagatggcacaaacagatcttAGACCATGTTAGGGTTTCCTGACCATATGACCAGACCAGGGAAAACTCGAAGCCGTAGTTGAAGGTGGTTTCCTGGTCAGGTATTGGAAAGACTCCTGGTCCTACTTATGGTGCCTGTGCTTTCTCACACTGGACTGAAACTTGAGTCCTGGGGAAGAAAATAGCTTTACTTTCCTTTTCTCTCACGCCCGTTATGATTACCGGATCTGGCAGTTGCATATTTCCCCCTTATTTTTCTGCCGTTTCTGTGTATGACTGGTTGAGGAAGCTCTGTAGATACATTTTGTATTTTAAATTTCAAGAGCAACATTTGAGTTGGAATTTTATCAATGTTAACTATAGTAATGGAGGGTACTGAATGGGATATGACAATGGTTTTACAAAGTTTTGTCTGACACTTTAATAAAGAAAACGTGCCATTG
>XR_002468675.2
AATACAACCTGAAAACATTTTCCATCCGTAAAATGGACGTGTATGTAGGCAGGGAATATATTTTCCAGCAACTAACTAGTTATATTCAGCAGATAAGTGCTCtccttatttttttaattaacgTTTTTATACAACCCTTTAGAATGTTGAATGCAACCCTGAATTTGTCCGGAAGAATGATCtttttgatgaaaccaagaaggCGTGTTTCCGGAAGACGTGGCTAGTGCTACAGTGGCAGCACCTGAACTTGTATTTTAGTAAACTACAATTGACAGTGTCAACTTTTATATTTTACAAGCTGTTGATTCATTGTCAAAATGATCTCTTTAACGGACTCACAGAAGATCGGAATGGGACTAACGGGCTTCGGCGTGTTTTTCCTCTTCTTTGGAATGATACTGTTTTTTGACAAAGCCCTCCTTGCCATAGGAAATATCCTGTTTGTGGCTGGCCTGTCATTTGTGATCGGTTTGGAGAGGACGTTCCGGTTCTTCTTCCAAAAACACAAGATGAAGGCAACTAGCTTCTTCCTGGGTGGAGTGTTGATCGTTCTTATTGGCTGGCCAATTGTGGGAGTGGTCCTAGAGGTCTATGGATTTTTCCTTTTATTCAGGGGTTTCTTCCCAGCGGCAGTAGGCTTCATCAGAAGGATACCCTTCCTGGGCTCCCTGCTAAACCTCCCATTCATCAGTGGGCCTTCATAATTAACTCTGAGGACAATCCGCTGTCTTGGTCAGTCACTGCAGATTTTCCCTTGCATttcgTGGACAAAGTGGGAGAGAGCAACACCATGGTATAACAGTGACTTTTTGTTTATGGAGAAAAACAATCTATTATATTTATGATACAGTTGTTCTCATCAAGCCACGTAACCCCCATTGGTCAATTGCTTACCTCCAACAGTTAGCTAGGTAACTTTCATGAGACTTTGTAAATTGATACCTCTTCCCATGTAAAGGGAAAACAATCCACTTTTTTTGTATCTTGATTCTGCAATTTTAAGGTCCGTACCAGCCAAGGGTACCAGTCCTGGTTGCTACGGGCAACTGTTACTAATGAATCTGGAGTTGGTTAAGATGGCTACCCCAGAATTGTTACGTGTTATTGAATGCTGCTCTCCTCTACTGGAGTACTCCCCACAAGGAGGAGAGTCCCTCTACCGGACTGAAGAGAACCCGTGTCCATTTTGGCACTCACACTCTACTATTGAATGTACAGACAAACTCACCATGTCATCGCCTCTGGACAACCTCAAGAGGTGTGGCGGAGGAGAGCTGGTCCTATTGTTACACTGTAGATGGGCCAGGGGGTTTTCCTAGTgctgtgctgtcttgccaaaaaATGAACTAGGGGTTAGCGagatggcacaaacagatcttAGACCATGTTAGGGTTTCCTGACCATATGACCAGACCAGGGAAAACTCGAAGCCGTAGTTGAAGGTGGTTTCCTGGTCAGGTATTGGAAAGACTCCTGGTCCTACTTATGGTGCCTGTGCTTTCTCACACTGGACTGAAACTTGAGTCCTGGGGAAGAAAATAGCTTTACTTTCCTTTTCTCTCACGCCCGTTATGATTACCGGATCTGGCAGTTGCATATTTCCCCCTTATTTTTCTGCCGTTTCTGTGTATGACTGGTTGAGGAAGCTCTGTAGATACATTTTGTATTTTAAATTTCAAGAGCAACATTTGAGTTGGAATTTTATCAATGTTAACTATAGTAATGGAGGGTACTGAATGGGATATGACAATGGTTTTACAAAGTTTTGTCTGACACTTTAATAAAGAAAACGTGCCATTG

Function

NR:

description
Vesicle transport protein GOT1B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563418.2 False 1739 mRNA 0.43 5 48328797 48332219
XM_021563419.2 False 1776 mRNA 0.43 6 48328797 48332219
XR_002468675.2 True 1804 mRNA 0.43 6 48328797 48332219

Neighbor

gene id symbol gene type direction distance location
pyroxd1 pyroxd1 coding upstream 20056 48300602 ~ 48308741 (+)
LOC110490846 LOC106576099 coding upstream 61622 48264481 ~ 48267175 (+)
LOC118938805 NA coding upstream 149653 48175444 ~ 48179144 (+)
slco1d1 LOC106575962 coding upstream 166913 48147072 ~ 48161884 (+)
LOC110490734 LOC106576001 coding upstream 182528 48118774 ~ 48146269 (+)
LOC110490188 LOC106566434 coding downstream 3912 48336131 ~ 48337866 (+)
kiss2 kiss2 coding downstream 27580 48359799 ~ 48360553 (+)
LOC110490738 LOC106576023 coding downstream 101539 48433758 ~ 48441874 (+)
LOC110490194 calu coding downstream 137802 48470021 ~ 48479877 (+)
LOC110490196 tnpo3 coding downstream 160356 48492575 ~ 48509832 (+)
G1300931 NA non-coding upstream 55308 48273194 ~ 48273489 (+)
G1300923 NA non-coding upstream 58626 48269946 ~ 48270171 (+)
G1300752 NA non-coding upstream 72351 48227136 ~ 48256446 (+)
G1300957 LOC106566433 non-coding downstream 12600 48344819 ~ 48349516 (+)
G1300967 NA non-coding downstream 28496 48360715 ~ 48360941 (+)
G1300953 ldhb non-coding downstream 30518 48362737 ~ 48367701 (+)
G1300972 NA non-coding downstream 46340 48378559 ~ 48378910 (+)
G1300973 NA non-coding downstream 47302 48379521 ~ 48379762 (+)
G1300598 LOC106575986 other upstream 380905 47946368 ~ 47947892 (+)
G1299894 NA other upstream 758134 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 2012795 46293582 ~ 46316075 (+)
G1298452 NA other upstream 2068360 46254339 ~ 46260437 (+)
G1296185 NA other upstream 3676718 44649701 ~ 44652079 (+)
G1301200 NA other downstream 252488 48584707 ~ 48585263 (+)
G1301458 NA other downstream 597827 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1063004 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 1066239 49398275 ~ 49410313 (+)

Expression

LOC110490186(LOC106576018) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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LOC110490186(LOC106576018) Expression in each Bioproject

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LOC110490186(LOC106576018) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network