LOC110490738 (LOC106576023)


Basic Information

Item Value
gene id LOC110490738
gene name LOC106576023
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48433758 ~ 48441874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944471.1
CTCAGCTGCGGTATTGGGTGGAGTCTTGTGCGCTTGACGCTTCACTGGAACAGGAGACCTGCTACATTACGCACGGAGAGGTCGCCAAGTACGCCTGTACTGCGAGGAGACTGGAGGGCAGAGAACTCTGAGAACAAAGCTAAcgattttttgtttttgttctaCGAAAAGGAAGAGTTTGTTACTCCATCCCTGTATACAGTGTGACGTTTTGGGACATTTGGATATATATTTTCTCAGAAGCTTATGGTTCTTTTAAGATTATTATAAAGACTGTTTGAGGAGATTAAAAGGCTATTCAGAGTGAGAGCAGACACGTTCCCTCGACTTTCTCTCCAAGGACTGCTCGGAAACCCCTGGCCCCTCATGAGATGCCCACGAGTCGCCTGGCATTTGACCCGATAACCATGGACGTCCGAGTGAAGGCCAATCCGAACCTCCACTTCGGGGTCAACGGGGGTCACGACGGCGCTGATAGAAGCTCCCACAGTAAACCATTTGAGGATAAGGCGCTGCATTTCTTAAGCCAGGAGGAGCAGGATTGTATCTTGTTCTTTGAGGAGACCATCGACTCCCTGCTGACTACCCCAGCAGTAGATGAGCTTGATGGACCAGGACCCCCCGTCCGGGCGTCcgcccccagcctcagccccgTACCACCCCTCTCAGCCTTGGACAGGCCCACCAAGGACCAGGACATCATAGACCTGGTTCGCCCAGCACAGACTAATCTGGTCCACCCCACACATGCACCATTCAACCCCCCCGTGCCAGATTTCACCCAGAATATGGTAATGAACAACCCTGAGAGGCATTTTGAGAACAAGCCGAGGCGTGAGGTGATGGAAAACTTCCCTACAGAGTACAACCTGCCCCTCCCTGGCAAGGACAGTGCCCCCTATGGCCACGCCCTGTACCAGCCTGTAGGCTCCGTCCCCACCCCCGTCCGCATCGCCCAGAAGATTGCAGAGCACCAGGGGAGTGTGGGGAACACCaacatcctctcttcctccctcctgccCAACTGCCGTAGGAGCCTCAATTTAGAGACCTTAGAGagaccacccacccacccagatTATCCAATCAAACAGGACCCGACCACCTCAGCCAAGCCCACCCATTACCCCAACAATATCAGCATGATAATGGGCAGCAACCAGCACCACAGCCATTCGCTGGCCAGTGTGAACCTCCAGGACAGGAAGTCTCAAATGCTGGCTAACCTATCAGGGACAACCCACCCTGTGGAGGCGGAGGAGCTCCATGGGCTGCAGAAGGCCCAAGTAAACCTTCCCACCCGGAGTGTGTCTTTCAAGGATCCCACTCCAAATAAGTCCCGGATGGAGGCACTGTCCAAACTGGGCTTGAACCGAAACAGCAGCACAAACACCAAACCCACTGATGCCCCGATTCCGGTTGCCACCTCTACACCCGTTCCTATGCATACCCCTACACTGACACCCGTGACTAAACCAGATGTGGCCAGACAGGCAAAGACCTTGccaccagcaacagtcaacaCCAACACCTCTCATGCAAGTATCCATGACAACAAGCCTGCTTCTCCGTCGCCCGAAGTCTCGTCCAAGGACTTTAACAGCTATGGCGGGAAGACCATTGTGGTGAACCCCTctaaggctgctgctgctgctccctcCACCAGTTGCCATGGCAGTAAGGCCCATCCAGTGACCTCTCACAGTGACTTCAACCCTTACGGGGGTAAGACTAAGGTAATGAAACCTGCTCCTGTTACCACAACCAGGGCTGACCTAACCCAACCAGACATTGAGAGCAGGGACGTGCCTCCTCCAGCCTCCACCCCAGCCAGAGTGATGCCTCCCccagcctccacctccaccccagcCAGAGTGATGCCTCCCCCAGCCTCCACCCCAGCCAGAGTGATGCCTCCCCTAGCCTCCACCCCAGCCAGAGTGATGCCTCCCCCAGCCTCCACCCCAGCCAGAGTGATGCCTCCCCCAGCCTCCACCCCAGCCAGAGTGATGCCTCCCCCAGCCTCCACCCCAGCCAGAGTGATGCCTCCCCCAGCCTCCACCCCAGCCAGAGTGATGCCTCCCCCAGCCTCCACCCCAGCCAGAGTGATGCCTCCCCCAGCCTCCACCCTCACCCCAGCCAGAGTGATGCCTTCCCCAGCCTCAACCTCCACCCCAGCCAAAGGGATGCCTCCACCaacctccccctccatcccaaCCAAAGGAGAAACCATGTCCTACGAGGTCAAGAGCTACGGGGGGAAGACCAGAATGGTCACCCCATCCCACACCACCCCCTCTCCCGTTTCCACCCCTGATATCCTCACACACACCCCAGTGAGGTCCCCCAGCAAAGCTTTAGCCCCAGTGCCTTCTCCAGCCTCCAGACCTTTCCGCTATAGCACTCCCCCTAGCGCCAACAGGGCGGTGGCGTCTCCCACTTCTCCGGAGTCCCGGCCGAAGTCCATCTCCAAGCCATCCTTCCGCTCCCAGGGGATCACAGTGCAGTTCTCCGGACGGGGAGTGACGGATGAGTCGCGCAGAGAAGCTCTCCGGAAACTGGGACTGCTGAAAGACACTTTCTAACTCTGCATAACCTCCATTCAGATGTAACAAAGGCCTCTGGAGTTTTTCTGAAAGGGTGTGAGGCGTGACAGGAGAGGATACCTACATTACGGTGGAATGAAACAGGATCCGGGCTGAAACCGGCACACCCGGTTCTGAGCGCTGAATGCTGACAAACGAGTCCGACACGTCACATGGCCTAgttgacaaatacacacacacacacacacacggacggacatgtatacacacacattcgtcaaacagacacacacgcactcaaacacacacgtgcacgtGCACTCATACCCACAAATGCCTTCACCCAACAACTCCCACATGCATCAAAGCACTGTCTCTTTATTGTGCTCTATTTAACTGTGGTCCTACTAAGTGTTTTACATTGCCTCTGAATCAAGACATATTGTACTTTACAGAAAACATGTACCTCTATTGTTCTCTGGGCCCGAAACAGACAAAAAAACTGACTTGTTCAAAAGGTAATGCAGACAGCTGAATGTCTTTGGGCACAGACTTTTTACTACCTTTGCCACCTTCTGGATGTCACATCCTCAGCTACCAGTGAGAATCCTTACATGCTCTCGCTCTCCAaagatggatatatatatatatatacccaatATATTTACGCTTACTTTGTATGACACTATATTGATTACTGATCCGTTTGAGGCAGGTACTGATAAAGTGGACTTGAACCATTATAAACTGGCTGTGAAGTCACCTGAGAACTGAAGAGCCTCACAACATGTTACTTTGTTTACCGATTTCAGCGTTGTTGTTATCCAGGGGGTTATTAGGAGTGTGATGTATCTCACCGTTCAGCTCTTATGAGCGTGAACAAGGACAAAGTTTGAAGGACTTTCCCGGCAGAATAAGGTTGAATTGACTTCACTCACTAATTGTCACGTTTACTCCCTCTCCGGCGCTCAACGTCACCAGTTTactcattattacgcacacctgccaccatcgttacgcgcacctgtgcctcatgacactcacctggacttcatcaccttcctgattacctcccctatagctgtcactccccttggttctttcctcaggcgttattgactctgtttctgACTAGCTGGTTCATGTATATAGGCTACTTGTGTTGCTTGCATTGTTccatgttcatttatttattaaattcactccctgtacGTGCTCCCCGACTCCCAGCGTACACGTTACACTAATCTATTAGAATGTATCTATATTCCCTGTGAGGACGGTAACCATCCTACTCATAAATATTGATGATATCCTACTTGATAGGTATTTATGCACCCATTGATTTCCACTGCTGCCTCATGGTATGTTAATGACAGGTCACTCGGAAGGGGGGTACATTCCCCCATGCAAGAGCAAAGCTTAGGAATGTAACAATTGATTGGCATACCAAGCAAACTAAGCAGCGATTCAAGTAGTTTGCATTCATGGACCTCATATGCTCAGCTCGAGGGTTATCCAATTATTGGAAGTTCTGAAGTGACCCCATGTGTTTTATCTCCTCATATGACATTTTTGTGAATGTAAGTTGCAGGAAAAAACAGGCTTGAGTTTCTAGGAAAGGAGTGATATGTAACTACAGCGCTGGCTAAAGGGTATTTTTTACTCCATGGACGTGCCTCCCACACAAAACCACTGAATGTGGTTTGAAAAGTAGACTTTTACTActttgaggggaaaaaaacgtaACTTGGTGAGGACGGGCAAGGGCTTGCAATGTCCAAAACACAAGCACTGAAGCCACAGAATCCAGAAATACTCTGTTCATGTACTGTAAGCTGAACTTGCATTTGCAGTGTGTAATTTATCTGTCATCATAACTGATGCCTCTTGTTTCTCACTGGACTGCAGATGTATTGGTACataaccctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaacatgtttgtccattttaaagttgtttttttttaatgaaaaaagTCAGACTCCGGTTTTGTAGTTCATCTACAGTAACTCATGAAGTAtctaatacacaccaacacacactggGAAAATATACCTGTAGTTTGCAGACccagggagagaaaccaaaaagaCTCATGTACAAAATCGTTATATgacattcaattaacatttacAAATTGTCAACAAAAGTTGCTGCTATGGTACAACAGCGCCTTTTATAGTTTTGTCTCATTGTCATATTGTACACAACGTTTAATGTACGTCTGTGTCACCTAATAAAGAGAGTAACATACATGA

Function

NR:

description
flocculation protein FLO11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944471.1 True 4959 mRNA 0.50 4 48433758 48441874

Neighbor

gene id symbol gene type direction distance location
kiss2 kiss2 coding upstream 73205 48359799 ~ 48360553 (+)
LOC110490188 LOC106566434 coding upstream 95892 48336131 ~ 48337866 (+)
LOC110490186 LOC106576018 coding upstream 101539 48328797 ~ 48332219 (+)
pyroxd1 pyroxd1 coding upstream 125017 48300602 ~ 48308741 (+)
LOC110490846 LOC106576099 coding upstream 166583 48264481 ~ 48267175 (+)
LOC110490194 calu coding downstream 28147 48470021 ~ 48479877 (+)
LOC110490196 tnpo3 coding downstream 50701 48492575 ~ 48509832 (+)
lamtor4 LOC106576032 coding downstream 308276 48750150 ~ 48752766 (+)
LOC110490204 LOC106576029 coding downstream 315331 48757205 ~ 48767893 (+)
LOC110490205 LOC106576033 coding downstream 333582 48775456 ~ 48783034 (+)
G1300990 lap2 non-coding upstream 34262 48398422 ~ 48399496 (+)
G1300983 NA non-coding upstream 48178 48385296 ~ 48385580 (+)
G1300981 NA non-coding upstream 49710 48383752 ~ 48384048 (+)
G1300979 NA non-coding upstream 51156 48382356 ~ 48382602 (+)
G1300973 NA non-coding upstream 53996 48379521 ~ 48379762 (+)
G1301014 NA non-coding downstream 24635 48466509 ~ 48466723 (+)
G1301140 NA non-coding downstream 46550 48488424 ~ 48488624 (+)
G1301144 NA non-coding downstream 49215 48491089 ~ 48491290 (+)
G1301162 NA non-coding downstream 77481 48519355 ~ 48519624 (+)
G1301164 NA non-coding downstream 79469 48521343 ~ 48521564 (+)
G1300598 LOC106575986 other upstream 485866 47946368 ~ 47947892 (+)
G1299894 NA other upstream 863095 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 2117756 46293582 ~ 46316075 (+)
G1298452 NA other upstream 2173321 46254339 ~ 46260437 (+)
G1301200 NA other downstream 142833 48584707 ~ 48585263 (+)
G1301458 NA other downstream 488172 48930046 ~ 48930588 (+)
G1301706 NA other downstream 953349 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 956584 49398275 ~ 49410313 (+)
G1303015 NA other downstream 1736400 50178274 ~ 50178565 (+)

Expression


Co-expression Network