LOC110490195 (LOC100135983)


Basic Information

Item Value
gene id LOC110490195
gene name LOC100135983
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48479898 ~ 48488099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563440.2
atcattgggattgaaaattctcgtgACAGCTTGGTCCTTTCGAGCCGGATCTCAATACCTGCTTCTGTCGGTCCAGGGAGACACCGAAAACCGTGCACGGGCGGATGAAATATCCGTAGATTAAAGACCTGGCCCCTTTCTGAGGGTTCTTTACAGGCCGGTGGCGAACTGGTCTGCGACAGAAACGGTGACGAGATCCAACCGACATTGAAACCTCAGCTGCAATAATAAGATGGATTACTGCACCCGACAAAGTAAGGTCTCTTCTGGCAAGGTCATGGTCACGGGGGCAGCTTAATCCGAAAGTTTATTCATCCACCGACAAGATCAGGAAGATCCGCAGGAGAAGCTTGTTCCTGACATCATTTATAAGAGGTTTATAAGTGGTTTATGGTCATATAAAAGGGAGCCTTTCAGCATCATAGTTCACATCTAAGGGACGGACAAGTAGTGGTCTGAGTCAGAGAGGAGCCAAGATGGGAAAGGACTTCCATCTGTACGAGAACATCTCTAAGGTCAGCCCATTTGAGGGGCCACAGTATCACCTGGCCCCAATATGGGCTTTCTACCTACAGACTGCTTTCATGGGCTTTGTGTTCTTTGCTGGAACACCTCTAAACTTTATCATTCTCGTGGTGACAGTGAAGTACAAGAAGCTGAGACAACCGCTGAACTACATCCTGGTCAACGTCTCGTTAGCAGGTTTCATCTTTGTGACGTTTTCTGTGAGTCAAGTGTTTGTTTCTAGCGCGAGAGGATACTACTTCCTGGGTTACACCTTGTGTGCAATGGAAGCTTGCATGGGTTCAATAGCAGGGTTGGTGTCAGCTTGGTCCCTGGCTGTCCTTGCCTTTGAGAGATATGTGGTCATCTGCAAACCCTTCGGCACCTTCAAATTTGACAACAACCAGGCTCTGGCGGCTGTTGGCTTCACCTGGGTCATGGGGATCGGATGTGCCACCCCACCGTTCTTCGGCTGGAGCAGGTATATCCCTGAGGGTCTGGGCTGCTCCTGTGGACCTGACTGGTACACAAACAACGAGGAGTACCACTGTGCCAGTTACACCAAATTCCTTATTGTTACCTGTTTCCTCATGCCCATGTCCATCATCTTCTTCTCCTACTCCCAGCTGCTGGGAGCACTACGGGCTgtggcagCTGCGCAGGCTGAGTCAGCTTCCACccagaaggcagagaaggaagtaTCCAGGATGGTGATTGTGATGGTGTGCTCCTTCATTCTGTGTTACGGCCCCTACGCCCTGGCAGGCTTGTACTTTGCCTACACAACAAGCGAGAACAAAGACTACCGCCTGGTGACCATCCCTGCTTTCTTCTCTAAAAGCTCCTGTGTATACAATCCTCTTATTTACGCCTTCATGAACAAACAGTTTAACGCCTGCATCATGGAGACTGTGTTCGGAAAGCAGATTGAAGAGACTTCAGTTTCAGCCTCCAAGACTGAGGTCTCCACAGCATAAACTGTGACGCTGGTCTCAGTCCATCAGGAGCCCATCCCCAACAGCCAACACCTGACCACCCCTTACCTCCACTGCTTCATACCAGGAAGGTCCTACTGTCAGAGAACTTTTCCAAACTCCGTAGTATTATTCTTATCATAATCAGTGTGTGATTTGTATAGGGtttgtggtggtgttgttggccattttatttcttattcatatgGGAACACCCCTTAGCACACCATGAGAGCCAAAAAGGGGTTTATTTTCTCCTGCGctttctttccctcttcctcctatccacctctctctcacctctcccccacAAATCGCACCCTGTTTAAGACCGTAATGAATCATGTACATTTCATTCTGAATATTGACCGAACCTGTCTGATGATGGCATATATTAGCTTACCAAAGCTGCAGTCTAAAAATAGCAATGCAtgaaaaaaaatgaagaaaaatacaagtttagcagttttatttttgtatctCCGGAATGGGGGGTCTTGGGGTGGATTCAATAAACCATCTAAGGTTCCCTAACACTTGATTGAAAATGTGAGTTCAGGGCAAATAGGGTTTATTGAATCTACCCCTTGATGAAATACTCAACATGTTGATTTATTGTAACATATCTAAGGTAAATAAAGATTTATATTGTATTACGATGCACTTTTA

Function

NR:

description
putative violet-sensitive opsin

GO: NA

KEGG:

id description
K04252 OPN1SW; short wavelength-sensitive opsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563440.2 True 2147 mRNA 0.47 6 48479898 48488099

Neighbor

gene id symbol gene type direction distance location
LOC110490193 LOC106576024 coding downstream 15161 48444455 ~ 48464737 (-)
strap LOC106609126 coding downstream 57961 48413786 ~ 48421937 (-)
LOC110490191 lap2 coding downstream 66279 48398418 ~ 48413619 (-)
LOC110490190 LOC106576021 coding downstream 87708 48385965 ~ 48392190 (-)
LOC118938972 NA coding downstream 91933 48387731 ~ 48387965 (-)
LOC110490197 irf5 coding upstream 21638 48509737 ~ 48518612 (-)
LOC110490198 mov10 coding upstream 55097 48543196 ~ 48581108 (-)
LOC110490200 LOC106576027 coding upstream 121400 48609499 ~ 48635371 (-)
drd4-rs LOC106609138 coding upstream 176833 48664932 ~ 48693199 (-)
LOC118938891 LOC106576028 coding upstream 254537 48742636 ~ 48744440 (-)
G1301123 calu non-coding downstream 180 48476986 ~ 48479718 (-)
G1301124 NA non-coding downstream 3016 48470978 ~ 48476882 (-)
G1301099 NA non-coding downstream 77317 48402223 ~ 48402581 (-)
G1301095 NA non-coding downstream 85788 48393908 ~ 48394110 (-)
G1301093 NA non-coding downstream 96030 48383644 ~ 48383868 (-)
G1301143 NA non-coding upstream 2264 48490363 ~ 48490859 (-)
G1301224 NA non-coding upstream 36152 48524251 ~ 48524500 (-)
G1301234 NA non-coding upstream 50821 48538920 ~ 48539137 (-)
G1301235 NA non-coding upstream 51873 48539972 ~ 48540318 (-)
G1301236 NA non-coding upstream 52270 48540369 ~ 48540677 (-)
celsr1a LOC106576003 other downstream 775860 47584674 ~ 47707520 (-)
tbc1d22a tbc1d22a other downstream 1260283 47217532 ~ 47405004 (-)
tafa5a fam19a5 other downstream 1526474 46822067 ~ 46995100 (-)
G1298541 LOC106575995 other downstream 2181946 46295361 ~ 46297952 (-)
G1298177 NA other downstream 2490635 45956059 ~ 45989263 (-)
si:dkeyp-27e10.3 LOC106576037 other upstream 347495 48822973 ~ 48839311 (-)
G1302602 NA other upstream 1175852 49663951 ~ 49664296 (-)
LOC110490244 LOC106609225 other upstream 1811365 50290050 ~ 50301082 (-)
LOC110490264 LOC106576080 other upstream 2711130 51199223 ~ 51205927 (-)
LOC110490744 LOC106576129 other upstream 3298532 51785488 ~ 51793354 (-)

Expression


Co-expression Network