LOC110490200 (LOC106576027)


Basic Information

Item Value
gene id LOC110490200
gene name LOC106576027
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48609499 ~ 48635371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563448.2
agtgctttagaccgctgcaccactcgggagccccaaatgCCAGCTAAGCCCCGGTCTGTGCTCTACGCAGGAGCTCTTAATGCTCTCTCCCAACACATACAcctccctctttctatccctctctctttctgccacGCTCCCATGCTTGGGGAACAGGGCTCAACCGGTGGTGGTAGGAGAAGCGGGACTGGAGTGTTTAGTGCTGTCGTCACTGCTCTTGATCGTTTGACCCTGGGAGAAAGTTCTGCCACAGGGGGAAATATGTGGCGGAAACCGGGGGGCTGGAACAGAGAGAATAGGCGAGGGATACCGCGAGCGTGAGAGCTGCGGCTCAGGCTTTGACCATTCAGCTACTGGACGACATTGTGGCTGAGAGACTGGAGGCTCAGGAGGCCAGAGGAAGATGTTGAACCCTTGGGGGCTGTTCCTCTGCCAGTTGGCAATAAACACGTCTTACCATGTCATAAAAGCCAGCCTCTGCCTGGGTGGGTCAGACATCTTTGCGACGGTGAGCGAGAACCGACCCGTAGGAGAGTTCATTGCGAACCTCAGCATCGTCGGGGACCCTACAGGAGTCAATAGCATCCGCTTGTGCCTCACCGGAGAGAACGCCAATTGGTTCTACCTAGAAGGGAGAACCATCAGGCTCAACTCATCGATTTTAAGAGTCCTGGATCGAGAGCGCCAGGGATCTGTTTTGATGGCAGCATTAACATGTTATGAAGACGACATAATACAAAGTGAATACAGGGTCATGGTTGAGATCCTGAACGAAAACGATAACAAACCAAGGTTCCTTGAGAAGACTATACAACCGCGTTACATAAGTGAGCTCACTGCAGTCAACTCTGTCGTCTTCACTGTCAAGGCCATCGATGCTGATGGAGACACCATCACCTACATCATCGACAGAGCCTCGCCTGATGCCAGCTACTTCAGGATAGACCTGCCCAACAGTGGTAAAGTAATCCTGGACAAGCCATTGGACTATGAGACCAAAACCAAGCTGCAGCTAGTCATCTACGCTGTGGAAACCAACACCAAGGAGTGGTACAACACTTCCGCCTCACTGATTGTGAACGTGGAGGACGGGGACGACCATTACCCTCAGTTCCTACCGTGCACACCCATCTCCCAGGACCACAACCACACGGTTGTCTGCACCAACCCCATCTACGTGGTCAACATCACAGAAAAGGACCAGGACATGTTACTGAATTTCTCTCCTGGTCCAATTCATGCCGAAGACGGAGACAGAAGCCTTGATACGCCTTTGCTCTACTCCATTCTCTCAGGTGCTGACAAAAACAGGTTTCAGATTGACAACCAAACAGCAGAGATCACAATGACAAAACGGGTGGAAAACAGACATATGACACCTATATTCCGACTGCGCATCATGGCATCTCAGCTGAATGACCCAAAGAAGTACAGTGTGGCGACAGCGCTGGTCCGGGTGCTGGCAGAGAACCGGTTCCCTCCCCTCTTTAACAGAACCACGTACAAGGGCTTCATCATCGAGAGCTCCAGCCCTGCCACGCTAGTCTCCACCTATGGGAACGAGGTGCTTTTCATCCAAGCCATAGACCAGGACTTTGTAGATGGGGTGAATCCAAAAATGCATTATTCTCTCCAGCCCACACGAGCCACCACTGGACTGTACCACATCACAGAGGAAGGGGTTATCATCGCTAAGACCGACCGCCTACGATCCTTCGACAGGCTCATCCTAGAGGTGGTTGCTATGGATGAGGAATCAGGTGAAGTTGCTAAAGCCTCAGTCGACATAGAGCTGCTACAAAGAAGCCAGCCAATCCCTTGGACACCTTTCAGAGACATGGATGTGAGGATAGCTGGCGGTATCATGGGTGGGATGCTGCTGCTGTTAGTGACTACCCTGTTCCTGCTGATCCGATGggccaagaggaggaggaggagacagagacaaaacCCGGCCGGACGAGGGGCTGTCGCCCTGGGGAAGCACCTCAAAGTGGTGAACTCGGGCCGGCTCATGATCCCCTTGGTCGAGGAGGTCTCCTACCAGAACGAAGGGTTCAGCATAGACTACGAGGCCTCGGGAGGTTCCGGAAGCCTCTTTGGGAGACATGGGGTCTACACCAGGAAACAGTCGCTGATCCCGCCGCCGCCACGCTGCCACAGCAGCCATCTAGACTGCGGCTCCGGTACCGTAACAGGCGACATGCTGCCTATACTGGCGACGCCAGAGCCCCTGGTTAAAGACCTCACTGCCGCCCTCATCTCCAACAGCAGGAAAGGTGACAACACCATCAGCACAGGGGCTGTGACAAAAGACGAGAAGGAGAGGAATAAGCAGAGGGAtatggagaaagaggaggagaggaataagcAGAGGGAtatggagaaagaggaggagaggaataagcAGAGGGAtatggagaaagaggaggagaggaataagcAGAGGGAtatggagaaagaggaggagagggataagcAGAGGGAtatggagaaagaggaggagagggaatgggagaagCAGTGGGAGCGCGCTGTTGGCACAAAAGAGAAGAGAAATTCTGAGGGGGAAAGGACGGATAAGTCGAGAGATGTTTTGGGTGCTTCTAGTGAGACCGCAGACGTAAGCGAGGCCCCTGAGGACCAAACAAACACAGAAAAGCCTCAGAGCCACAGGAtgaaaacacaccacatcagAGAACCCAAAGACGGGCACAAAAGCTCTTCTGAAGAGTAGTCTGAGGCAGAAAAATCAATATTAGGCTATGCACTCTGATGTGTCTTTCAGACGATTATGACACAGCCTCGGAGGACGACCAGGTCCCGTTACTCCAGTATCAGGACGTCGAGGGGGGAAATGCAGCGCAAGGGCTCAGCGAAACAAACCAGCGATCAAGCAAACAGATGACCGAGTAACCCACATATGCACCATTCAGACTCACACTCTGGGCTTCAGACTCACATTGAAGATACAAAATAACTCTaaccatttatttaaaaaaaaataaaactgacATTATGGAGCCAAACAAACTCTATACACAgacaaaaatgtatataaatgtttttttctctctccaattCCATATGATTATGTTGGTGTCACACTCTGACACTTTGAGTTGTTTGTTtcgtcagggtgtgatatgagtgggcattctatgttgcatgtctagttagtctgtttctatgtgttttggcctgatatggttctcaatcagtggcaggtgtttgtcgttgtctctgatgcATGTTTGCACACAGTATTAATAGCGGTCACGGTCGTcttattattttgtttgtttgtttagtatTCGTCGTGTTCTTTCATCTACATTAAAATAatgtattcacacca

Function

NR:

description
cadherin-related family member 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563448.2 True 3358 mRNA 0.51 15 48609499 48635371
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110490198 mov10 coding downstream 28391 48543196 ~ 48581108 (-)
LOC110490197 irf5 coding downstream 90887 48509737 ~ 48518612 (-)
LOC110490195 LOC100135983 coding downstream 121400 48479898 ~ 48488099 (-)
LOC110490193 LOC106576024 coding downstream 144762 48444455 ~ 48464737 (-)
strap LOC106609126 coding downstream 187562 48413786 ~ 48421937 (-)
drd4-rs LOC106609138 coding upstream 29561 48664932 ~ 48693199 (-)
LOC118938891 LOC106576028 coding upstream 107265 48742636 ~ 48744440 (-)
zgc:193726 LOC106576030 coding upstream 109171 48744542 ~ 48747684 (-)
atp6v1f atp6v1f coding upstream 113032 48748403 ~ 48750105 (-)
LOC110490207 LOC106609140 coding upstream 118141 48753512 ~ 48757040 (-)
G1301262 NA non-coding downstream 11120 48598069 ~ 48598379 (-)
G1301206 NA non-coding downstream 20418 48587741 ~ 48589081 (-)
G1301249 NA non-coding downstream 24986 48584267 ~ 48584513 (-)
G1301248 NA non-coding downstream 27647 48581509 ~ 48581852 (-)
G1301236 NA non-coding downstream 68822 48540369 ~ 48540677 (-)
G1301737 NA non-coding upstream 1380 48636751 ~ 48658613 (-)
G1301778 NA non-coding upstream 59618 48694989 ~ 48695281 (-)
G1301785 NA non-coding upstream 67917 48703288 ~ 48703661 (-)
G1301795 NA non-coding upstream 86803 48722174 ~ 48722390 (-)
G1301811 NA non-coding upstream 132588 48767959 ~ 48768228 (-)
celsr1a LOC106576003 other downstream 905461 47584674 ~ 47707520 (-)
tbc1d22a tbc1d22a other downstream 1389884 47217532 ~ 47405004 (-)
tafa5a fam19a5 other downstream 1656075 46822067 ~ 46995100 (-)
G1298541 LOC106575995 other downstream 2311547 46295361 ~ 46297952 (-)
G1298177 NA other downstream 2620236 45956059 ~ 45989263 (-)
si:dkeyp-27e10.3 LOC106576037 other upstream 200223 48822973 ~ 48839311 (-)
G1302602 NA other upstream 1028580 49663951 ~ 49664296 (-)
LOC110490244 LOC106609225 other upstream 1664093 50290050 ~ 50301082 (-)
LOC110490264 LOC106576080 other upstream 2563858 51199223 ~ 51205927 (-)
LOC110490744 LOC106576129 other upstream 3151260 51785488 ~ 51793354 (-)

Expression

LOC110490200(LOC106576027) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110490200(LOC106576027) Expression in each Bioproject

Bar chart with 19 bars.
LOC110490200(LOC106576027) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network