zgc:193726 (LOC106576030)


Basic Information

Item Value
gene id zgc:193726
gene name LOC106576030
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48744542 ~ 48747684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563453.2
cacaaacacagctctgTTCTACTACCTGCACTTTATAACGAGATGGAAGTGTGGCCAAGAGGTGCTCAGGAAGCTATATAAGAGGTCTTCCCAGAATTAACCGGTACCTGAACACTGGGGATTTTTCACGGACCTGACATCCCTTCCGGAGAACAGATGATCCCTGCCTGGTCTCTCGGTGTCCTCCTCCTGGGCTACGTCTTTGGATTCCCAGTCCCATTCAACAGCACTCAGAGACAATATGAATATGAGACTCTTCTTCAACTCAACGACACAGTGGGCAAATCTACACAACCCTTCATGTCGAATGAAACAGAGATTCCCTTCCCCTTTCAAATTATACTTCCTATGGAGAATATGAGTCCATTATTGCCTGAGGAGTTGATGCAGAGTCAGAATGAGACAGATAGCAACTCAACATTAACTACGTACAACGGTCCTCCTTCCGTTAAGAATATAAGGGAAAGAAAACTTGCATTGCACGGATATGTAGTACCTCCTCCAGGCTGCGTGGTGAGTCTCTGTGCCCTGATTAACCTGGGCCATGCACTGAACCAGGGCGGGGACGAGAGTGCAGGCGGGGCAACCAGAGACCCACATGGCAATGGCAAGAGATGaaaggaagaggagtggaggaagaTGAGAAGAAGTGTGATGTGGGGCCTCATACTGGAGCTGCTGGCTGTGCTCTATTTGTCTTAAACTATTACTTTTCTTTGTCAGCTTTCCTTTGTCACTACTGATCTGGAAAGACAAGAGGATTGAGAGAAATGTGGAAATATTGTAGTCACTCCACCGGCCTATTGCTTATGTGCAGCACttggtgatggaggagaggacacaaTAGGAGAGGAGTTGTACAGAGGGTGTAATTTGTGTGGTAAACTGAAAAAGTTGCTATTTATTAAAGACAGATTCTAATTATTTGAGATGATCCACTTTTAATAAAGAAAATGATCAAATA
>XM_021563454.2
cacaaacacagctctgTTCTACTACCTGCACTTTATAACGAGATGGAAGTGTGGCCAAGAGGTGCTCAGGAAGCTATATAAGAGGTCTTCCCAGAATTAACCGGTACCTGAACACTGGGGATTTTTCACGGACCTGACATCCCTTCCGGAGAACAGATGATCCCTGCCTGGTCTCTCGGTGTCCTCCTCCTGGGCTACGTCTTTGGATTCCCAGTCCCATTCAACAGCACTCAGAGACAATATGAATATGAGACTCTTCTTCAACTCAACGACACAGTGGGCAAATCTACACAACCCTTCATGTCGAATGAAACAGAGATTCCCTTCCCCTTTCAGCCTGAGGAGTTGATGCAGAGTCAGAATGAGACAGATAGCAACTCAACATTAACTACGTACAACGGTCCTCCTTCCGTTAAGAATATAAGGGAAAGAAAACTTGCATTGCACGGATATGTAGTACCTCCTCCAGGCTGCGTGGTGAGTCTCTGTGCCCTGATTAACCTGGGCCATGCACTGAACCAGGGCGGGGACGAGAGTGCAGGCGGGGCAACCAGAGACCCACATGGCAATGGCAAGAGATGaaaggaagaggagtggaggaagaTGAGAAGAAGTGTGATGTGGGGCCTCATACTGGAGCTGCTGGCTGTGCTCTATTTGTCTTAAACTATTACTTTTCTTTGTCAGCTTTCCTTTGTCACTACTGATCTGGAAAGACAAGAGGATTGAGAGAAATGTGGAAATATTGTAGTCACTCCACCGGCCTATTGCTTATGTGCAGCACttggtgatggaggagaggacacaaTAGGAGAGGAGTTGTACAGAGGGTGTAATTTGTGTGGTAAACTGAAAAAGTTGCTATTTATTAAAGACAGATTCTAATTATTTGAGATGATCCACTTTTAATAAAGAAAATGATCAAATA
>XM_036944477.1
cacaaacacagctctgTTCTACTACCTGCACTTTATAACGAGATGGAAGTGTGGCCAAGAGGTGCTCAGGAAGCTATATAAGAGGTCTTCCCAGAATTAACCGGTACCTGAACACTGGGGATTTTTCACGGACCTGACATCCCTTCCGGAGAACAGATGATCCCTGCCTGGTCTCTCGGTGTCCTCCTCCTGGGCTACGTCTTTGGATTCCCAGTCCCATTCAACAGCACTCAGAGACAATATGAATATGAGACTCTTCTTCAACTCAACGACACAGTGGGCAAATCTACACAACCCTTCATGTCGAATGAAACAGAGATTCCCTTCCCCTTTCAAATTATACTTCCTATGGAGAATATGAGTCCATTATTGCCTGAGGAGTTGATGCAGAGTCAGAATGAGACAGATAGCAACTCAACATTAACTACTCATTTATTTCCCCTCGACTGCACACCGACACAGGTACAACGGTCCTCCTTCCGTTAAGAATATAAGGGAAAGAAAACTTGCATTGCACGGATATGTAGTACCTCCTCCAGGCTGCGTGGTGAGTCTCTGTGCCCTGATTAACCTGGGCCATGCACTGAACCAGGGCGGGGACGAGAGTGCAGGCGGGGCAACCAGAGACCCACATGGCAATGGCAAGAGATGaaaggaagaggagtggaggaagaTGAGAAGAAGTGTGATGTGGGGCCTCATACTGGAGCTGCTGGCTGTGCTCTATTTGTCTTAAACTATTACTTTTCTTTGTCAGCTTTCCTTTGTCACTACTGATCTGGAAAGACAAGAGGATTGAGAGAAATGTGGAAATATTGTAGTCACTCCACCGGCCTATTGCTTATGTGCAGCACttggtgatggaggagaggacacaaTAGGAGAGGAGTTGTACAGAGGGTGTAATTTGTGTGGTAAACTGAAAAAGTTGCTATTTATTAAAGACAGATTCTAATTATTTGAGATGATCCACTTTTAATAAAGAAAATGATCAAATA
>XM_036944480.1
cacaaacacagctctgTTCTACTACCTGCACTTTATAACGAGATGGAAGTGTGGCCAAGAGGTGCTCAGGAAGCTATATAAGAGGTCTTCCCAGAATTAACCGGTACCTGAACACTGGGGATTTTTCACGGACCTGACATCCCTTCCGGAGAACAGATGATCCCTGCCTGGTCTCTCGGTGTCCTCCTCCTGGGCTACGTCTTTGGATTCCCAGTCCCATTCAACAGCACTCAGAGACAATATGAATATGAGACTCTTCTTCAACTCAACGACACAGTGGGCAAATCTACACAACCCTTCATGTCGAATGAAACAGAGATTCCCTTCCCCTTTCAGCCTGAGGAGTTGATGCAGAGTCAGAATGAGACAGATAGCAACTCAACATTAACTACTCATTTATTTCCCCTCGACTGCACACCGACACAGGTACAACGGTCCTCCTTCCGTTAAGAATATAAGGGAAAGAAAACTTGCATTGCACGGATATGTAGTACCTCCTCCAGGCTGCGTGGTGAGTCTCTGTGCCCTGATTAACCTGGGCCATGCACTGAACCAGGGCGGGGACGAGAGTGCAGGCGGGGCAACCAGAGACCCACATGGCAATGGCAAGAGATGaaaggaagaggagtggaggaagaTGAGAAGAAGTGTGATGTGGGGCCTCATACTGGAGCTGCTGGCTGTGCTCTATTTGTCTTAAACTATTACTTTTCTTTGTCAGCTTTCCTTTGTCACTACTGATCTGGAAAGACAAGAGGATTGAGAGAAATGTGGAAATATTGTAGTCACTCCACCGGCCTATTGCTTATGTGCAGCACttggtgatggaggagaggacacaaTAGGAGAGGAGTTGTACAGAGGGTGTAATTTGTGTGGTAAACTGAAAAAGTTGCTATTTATTAAAGACAGATTCTAATTATTTGAGATGATCCACTTTTAATAAAGAAAATGATCAAATA
>XM_036944476.1
cacaaacacagctctgTTCTACTACCTGCACTTTATAACGAGATGGAAGTGTGGCCAAGAGGTGCTCAGGAAGCTATATAAGAGGTCTTCCCAGAATTAACCGGTACCTGAACACTGGGGATTTTTCACGGACCTGACATCCCTTCCGGAGAACAGATGATCCCTGCCTGGTCTCTCGGTGTCCTCCTCCTGGGCTACGTCTTTGGATTCCCAGTCCCATTCAACAGCACTCAGAGACAATATGAATATGAGACTCTTCTTCAACTCAACGACACAGTGGGCAAATCTACACAACCCTTCATGTCGAATGAAACAGAGATTCCCTTCCCCTTTCAAATTATACTTCCTATGGAGAATATGAGTCCATTATTAGGCAGTGTGTCTCTCTGCTATCTTCCCACCTGCATGAACGCTAATCTGGGGTCAGCCCTGCAGAAAGGGGACGAGATAGCGGGCGCCTCCACCAATGACCCCCATGGGATAGGCAGAAAATGACACTGACACAGGACAGCTTGAATTGGCACACCGTTTTTTAATAACATGTGTTATCCCATTGGTTGCAGCATGACTTTGGTAATAGGTGTTGTGGCTctctaacaaacaaaaaaatgcacTACAACTATTTCTGCACCAGAGTTGAAGTAAATTGTGAGCATGAAAAGGAAACTGTAatgctagggggggggggggggcattttaaagtagattaactaTTGTAATGGTTCATAAATCACATTCAATCTGTTGAGTACTTTATGTCAAATACTTACTTGATTTGTTTAAAGTGACTAAACCTAATATACTTCACTTCTTTTGTACGCAAATAAAAAGCTTTTTACAAACCAGGAGTGATGCAATAAATGCCTGCTtttcacatagaaatagaatcataAATGTCTGTCTGCACTTTCCTTGATTCAATCCACACTCACTCTGGTTCATAAAAAAAATGATAGGCATTACTCAACCATGAATATCTAGTTGAGCAGAATCACGCAAAGGGAAACcaagtacagacagacagaataactgTTAAAGTGATACTCTTCTGTTGAATCTAAAGgccttgatgtgtgtgtgttttatatgtatactgtatgtaggcaaTGAATCCCAGCTGAGTAAACAAGAAATGTTCTATAACTTGAAGTGACAGAGTAGTTTAACTCACTACTGATATCCCCTGTGAATCCACGCAGGCTCTGTGTTCTTTGGAACAGCACTGACACAGAGTATGGCTCAACGTGAGGAAGATCGTTGGTGGAAAGCGTTGTGGGTATGCTATAGAAAATATATACTGTTACAGTTCAACTCCCACTCTGTTGTTGCTCTTTTGC
>XM_036944478.1
cacaaacacagctctgTTCTACTACCTGCACTTTATAACGAGATGGAAGTGTGGCCAAGAGGTGCTCAGGAAGCTATATAAGAGGTCTTCCCAGAATTAACCGGTACCTGAACACTGGGGATTTTTCACGGACCTGACATCCCTTCCGGAGAACAGATGATCCCTGCCTGGTCTCTCGGTGTCCTCCTCCTGGGCTACGTCTTTGGATTCCCAGTCCCATTCAACAGCACTCAGAGACAATATGAATATGAGACTCTTCTTCAACTCAACGACACAGTGGGCAAATCTACACAACCCTTCATGTCGAATGAAACAGAGATTCCCTTCCCCTTTCAAGGCAGTGTGTCTCTCTGCTATCTTCCCACCTGCATGAACGCTAATCTGGGGTCAGCCCTGCAGAAAGGGGACGAGATAGCGGGCGCCTCCACCAATGACCCCCATGGGATAGGCAGAAAATGACACTGACACAGGACAGCTTGAATTGGCACACCGTTTTTTAATAACATGTGTTATCCCATTGGTTGCAGCATGACTTTGGTAATAGGTGTTGTGGCTctctaacaaacaaaaaaatgcacTACAACTATTTCTGCACCAGAGTTGAAGTAAATTGTGAGCATGAAAAGGAAACTGTAatgctagggggggggggggggcattttaaagtagattaactaTTGTAATGGTTCATAAATCACATTCAATCTGTTGAGTACTTTATGTCAAATACTTACTTGATTTGTTTAAAGTGACTAAACCTAATATACTTCACTTCTTTTGTACGCAAATAAAAAGCTTTTTACAAACCAGGAGTGATGCAATAAATGCCTGCTtttcacatagaaatagaatcataAATGTCTGTCTGCACTTTCCTTGATTCAATCCACACTCACTCTGGTTCATAAAAAAAATGATAGGCATTACTCAACCATGAATATCTAGTTGAGCAGAATCACGCAAAGGGAAACcaagtacagacagacagaataactgTTAAAGTGATACTCTTCTGTTGAATCTAAAGgccttgatgtgtgtgtgttttatatgtatactgtatgtaggcaaTGAATCCCAGCTGAGTAAACAAGAAATGTTCTATAACTTGAAGTGACAGAGTAGTTTAACTCACTACTGATATCCCCTGTGAATCCACGCAGGCTCTGTGTTCTTTGGAACAGCACTGACACAGAGTATGGCTCAACGTGAGGAAGATCGTTGGTGGAAAGCGTTGTGGGTATGCTATAGAAAATATATACTGTTACAGTTCAACTCCCACTCTGTTGTTGCTCTTTTGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106576030 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563453.2 False 964 mRNA 0.45 7 48744542 48747684
XM_021563454.2 False 928 mRNA 0.46 6 48744542 48747684
XM_036944477.1 False 998 mRNA 0.45 7 48744542 48747684
XM_036944480.1 False 962 mRNA 0.46 6 48744542 48747684
XM_036944476.1 False 1337 mRNA 0.42 5 48745400 48747684
XM_036944478.1 True 1301 mRNA 0.42 4 48745400 48747684

Neighbor

gene id symbol gene type direction distance location
LOC118938891 LOC106576028 coding downstream 102 48742636 ~ 48744440 (-)
drd4-rs LOC106609138 coding downstream 51343 48664932 ~ 48693199 (-)
LOC110490200 LOC106576027 coding downstream 109171 48609499 ~ 48635371 (-)
LOC110490198 mov10 coding downstream 163434 48543196 ~ 48581108 (-)
LOC110490197 irf5 coding downstream 225930 48509737 ~ 48518612 (-)
atp6v1f atp6v1f coding upstream 719 48748403 ~ 48750105 (-)
LOC110490207 LOC106609140 coding upstream 5828 48753512 ~ 48757040 (-)
dennd6b dennd6b coding upstream 22131 48769815 ~ 48775379 (-)
LOC110490203 LOC106609145 coding upstream 36757 48784441 ~ 48813048 (-)
svopl svopl coding upstream 66300 48813984 ~ 48822770 (-)
G1301795 NA non-coding downstream 22152 48722174 ~ 48722390 (-)
G1301785 NA non-coding downstream 40881 48703288 ~ 48703661 (-)
G1301778 NA non-coding downstream 49261 48694989 ~ 48695281 (-)
G1301737 NA non-coding downstream 85929 48636751 ~ 48658613 (-)
G1301739 NA non-coding downstream 128123 48615903 ~ 48616419 (-)
G1301811 NA non-coding upstream 20275 48767959 ~ 48768228 (-)
si:dkeyp-27e10.3 LOC106576037 non-coding upstream 75290 48822973 ~ 48839311 (-)
G1301877 NA non-coding upstream 159126 48906810 ~ 48907165 (-)
G1301905 NA non-coding upstream 200428 48948112 ~ 48948826 (-)
G1301914 NA non-coding upstream 211348 48959032 ~ 49046066 (-)
celsr1a LOC106576003 other downstream 1040504 47584674 ~ 47707520 (-)
tbc1d22a tbc1d22a other downstream 1524927 47217532 ~ 47405004 (-)
tafa5a fam19a5 other downstream 1791118 46822067 ~ 46995100 (-)
G1298541 LOC106575995 other downstream 2446590 46295361 ~ 46297952 (-)
G1298177 NA other downstream 2755279 45956059 ~ 45989263 (-)
G1302602 NA other upstream 916267 49663951 ~ 49664296 (-)
LOC110490244 LOC106609225 other upstream 1551780 50290050 ~ 50301082 (-)
LOC110490264 LOC106576080 other upstream 2451545 51199223 ~ 51205927 (-)
LOC110490744 LOC106576129 other upstream 3038947 51785488 ~ 51793354 (-)

Expression


Co-expression Network