lamtor4 (LOC106576032)


Basic Information

Item Value
gene id lamtor4
gene name LOC106576032
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48750150 ~ 48752766 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563465.2
CACGAAATGGCGAGCAGGAAAACATGACCTGTCTATCAATGACAATGCAATACCTTAAATAGCTTTCAATTGTTTTGTAAACGAAGTAGTGGTTTTGGGTTTATGCCTCATCAAAGGATAAAATCATTCTATATCGGAGTGACGTGACGTCACGTCAGGAAGTTACGTGAAAAAGAGGAAACACTTCAGATGGGCTTCCTCATCGGGCAAAACAAGTGAAAATGACTACTAGCGCTCTGACACAGGGTCTGGAGAGGATCCCCGATCAACTGGGATATTTGGTGATCAGTGAGGATGGCGTATTGGCATCTGCGGGGGAGCTGGAGAATGATGAGCACACAGCTGGGGTCATAATGCAGATGGTGCGGACAGCATGTCACTTCAGACTGCAGGGTGCTGCTGAGCCACCCTTCAAACGCATGTCAGTCATGCTAGAGGACTATGTGTACACCGTGACCGTGTCTGGTCAGAAGGTGTTTGTGGTGAAACGTCAGAACAACAAGAGGGAACCTGTAGTGGTGTAGAACCGTGTAGTGAAGATGGGTTGGGAGGACATCActcaattcacacaggacaggGACTCTGTAATCCACTGAACTGTTTTGTTCCATTCCTAGTTATATAAGGTTTTAGAACAACAGAAGAAAGCACATATGAAgttgtactgaacaaaaatattaatacaacatgcaacaatttcaaagattttactgaattaaagttcatagaaggaaatcagtcaattgaaataaattcattaggccctaatctatggtttTCACATAAGTGGGCAGTGGTgtggcctgggagggcataggcccacccactggggagccaggcccagcccaTCGGAATGAGTTTTTTCCCCCAAAAATtgcattattacagacagaaattctCCTCAACACTCCCCATTCCCCtactcagatgatcccgcaggttaagaagctggatgtggaggtcctgggctggcgtggttacacgtggtctgcagttgtgaggccagttggatgtactgtgaaaatctctaaaatgacatttgaggtggcttattgtagagaaatgaacattacattctctggcaacggctctgttggacattcctgcagtcagcatgccaattgcaggctccctcaacttgagacatctgtggcattgtgttgtgtgacaactccaCATTTTAGaaaggccttttattgtccccagcacaagtgtAATGATCACGCTATAGTAATGATCACGCTATTTAATacacttcttgatatgccacacctgtcaggtggatggcttatcttggcaaaggagaaatgctcattaacagggatgtaaacaaatttgtgcacaaagttTGAGAGAAATAATCTTTTTGTGCATAAAGAATTTCTGGGAtctcttatctcagctcatttaaccaacactttacatgttaagtttatatttttgttcagtatagatattGAAGAATTCACATTGAATGGGACAAAATATGCATGTCAAACTGCATGTCATCTTAATTGGTAACTTTGTAATGAGAAATGGAACAGAATAGTGCTGTGGTGTATTAGTCCCTACAGGATGTGATAATGAATTGTTGGTTTGTGTGTGGCTGGTAGACTGGAATTCAATCTATTCAGTTTATAGTATCTGTGCACATGCTATTTAGTTTGAATGCTCCCTAATAACCCAGCAGAGTTTTGTTTAACATACtgaatgttgcagatagaaataccATGGACAGAGCTGACATCTTTTAAATACCTCTGAGGTATGTCTGGTATACATTTCTTTGTATTAATGTCATGCCCTACGGAATGTGGCTTGATGGAAAATGATATTTTCAAGGTGACTGCTGTTCTTTTCCTAACCTGTATGTTTATATGTAATTGCTATCAGTActaatgtgtgtatatacacatgcAGTGACTGTTTTATCGTGAGCTATTGTCGTTGCATGTTAAATTGTCTGAAATATTTAGGGTCCTTCTCTAAATGAAATACCTTGGTTTTTACTATTTTGATTACCTCAAATAAAGCTTTGCTTATAAACATCCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0061462 protein localization to lysosome biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0008361 regulation of cell size biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0005764 lysosome cellular_component
GO:0071986 Ragulator complex cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K20399 LAMTOR4; ragulator complex protein LAMTOR4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563465.2 True 2052 mRNA 0.41 4 48750150 48752766

Neighbor

gene id symbol gene type direction distance location
LOC110490196 tnpo3 coding upstream 240318 48492575 ~ 48509832 (+)
LOC110490194 calu coding upstream 270273 48470021 ~ 48479877 (+)
LOC110490738 LOC106576023 coding upstream 308276 48433758 ~ 48441874 (+)
kiss2 kiss2 coding upstream 389597 48359799 ~ 48360553 (+)
LOC110490188 LOC106566434 coding upstream 412284 48336131 ~ 48337866 (+)
LOC110490204 LOC106576029 coding downstream 4439 48757205 ~ 48767893 (+)
LOC110490205 LOC106576033 coding downstream 22690 48775456 ~ 48783034 (+)
LOC110490215 LOC106576040 coding downstream 99813 48852579 ~ 48859532 (+)
LOC110490216 LOC106609152 coding downstream 202304 48955070 ~ 48957811 (+)
LOC118938892 NA coding downstream 240411 48993177 ~ 48993971 (+)
G1301366 NA non-coding upstream 18589 48727392 ~ 48731561 (+)
G1301358 NA non-coding upstream 40766 48709140 ~ 48709384 (+)
G1301357 NA non-coding upstream 41675 48708197 ~ 48708475 (+)
G1301355 NA non-coding upstream 43094 48706722 ~ 48707056 (+)
G1301329 NA non-coding upstream 86578 48663319 ~ 48663572 (+)
G1301285 NA non-coding downstream 15214 48767980 ~ 48768236 (+)
G1301434 NA non-coding downstream 140772 48893538 ~ 48893741 (+)
G1301439 NA non-coding downstream 145922 48898688 ~ 48898972 (+)
G1301446 NA non-coding downstream 155752 48908518 ~ 48908726 (+)
G1301450 NA non-coding downstream 164230 48916996 ~ 48917271 (+)
G1301200 NA other upstream 164887 48584707 ~ 48585263 (+)
G1300598 LOC106575986 other upstream 802258 47946368 ~ 47947892 (+)
G1299894 NA other upstream 1179487 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 2434148 46293582 ~ 46316075 (+)
G1301458 NA other downstream 177280 48930046 ~ 48930588 (+)
G1301706 NA other downstream 642457 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 645692 49398275 ~ 49410313 (+)
G1303015 NA other downstream 1425508 50178274 ~ 50178565 (+)
G1303095 LOC106609233 other downstream 1548679 50301445 ~ 50302351 (+)

Expression


Co-expression Network