LOC110490215 (LOC106576040)


Basic Information

Item Value
gene id LOC110490215
gene name LOC106576040
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48852579 ~ 48859532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563482.2
AGTATTGTGATATGAAACCAAGATGGCGTCTACGGAAAGCTAGTTACATTTGTAGACACATTTATATTTAACGCAACATTGTTTGTTCTATGCCAGTACTAAATGAACACTACTTTCTGACAGATTGGGTCGAGAGTGGTGTTGCTTAAAAATGGATGGCTAGCTAGCATGATAGCAGTAGCATCTAGCTAGTACGCGACCAGTTTAGTACGGCAATGACTTATGAATCgaatagctagctaacttgctgtATTAGCTCCCCTAAAAGCATGACGGAGGCTCCGAGTGAGGACGAACTGCGGCCGGTGCCACGTGAGCGGGCGATTCTGGAGAGTTTCTTCACGCAGCTCGGAATGTTCTCGTTCGACCGGGCGAAGGACTAtgtggagaaagagaaggacagcaGCAAGAGCGCAGGGGCCATTTGGGCCGCTATCCTCGCCGCCTTCGCACACCTTTCCGCAGCGGAGAAGGCCTATCACAACATGACGTTCCTGGGACAAAAGCTGGGCGGCCAGTCGTTCTTCAGCCGCAAGGACTCCATCCGCACCATCTACACCTCCCTGTTCAACACGCTGAGGAAGGTGGTGACCATGGGGCGCCACGCCCAGCCAGGCTCCGCTTCCTACCTGGAGGACCTGCTGTCTCACCTGTCGGAGCAGCTGTGCCACTTCACCCAGGCCCGCATGGAGATGGCTGACCTGTACGAGAAGATGCATGCACTGGGCAGCCAGAAGAACATCAACTCTGAGGAGCTGGTCGCCACCCTCGAGGCAGTGGTGCAGAAATACAGCTCCAGatTCCACCACCCCATCCTGGGCCGCTTGGAGGGGGGCTTCCAGACAGAGGTGGATGTGGTGACACAGCTCCTGCGCTGCCAGGCCCAGGTGTCAGAGTGGCACTTCCTGCCCGCCCTGCTCAGCCTGCATGGGGCTAGCTCTAAGCTGACCGCCTGGGGACAGCTCTTCCAGCGCCAGGGGGAGACCCGCAAGCACCTGTTCGGAGGCCAGTCCCAGAAAGCCGTGCAGCCGCCCCACTTGTACGTGTGGCTGCAGCGCTTCCAGGGGGCGCTCCTTGCTAAATTCAGCTTCTACTTCCATGAGGCGCTGAGCCGCCAGACGGTGTCCGCAGACATGAAGGCCCTGACGGCACGCACGGCGCCCGATTACCACGGCAAGATCTGTTCGTTTATCCGCAAACACGATGCCAACAATGTCTCGCTGGTGTTCGACAACCGCGGCTTGGACAGCTTCCAGGGCCACGGCTACCACCACCCGCACTCGTACCGCGAGGCGCCCAAGGGGGTGGAGCAGTTCCCCGCCGTGGTGTCCCTTCCCGGGGGTGAGCGGCCGCTCACGCACTGGCCCAACGTCATCATGATGATGGGCGACTTCGAGGCGGAGCTCAACACGCCGGACAAGGTGGTACACTTCTATGACGACAAAGTCCAGAGCACTTACTACCTGACCCGACCGGAATCACACTTCACCCTGGTGGTCATCTTCGACGGTAGGAAGTCCGAGAAGGACTCGCACATCACCGCCTTCCTGCAGGAGATCTCTGGCTCACTGAGGAACTCCAAACCATTCAGCACCCTCAAACCTGGCTCcaagggctgagagagagatgcCCTACTTCATATACATCATAAACTGACTGTGTCCCCATAAGGGGTATATGGGTGTGTGCGTGTAACGTTATAACAGAGAGACCAGGCATTGTTCCATAGACAGGATGAACAAGTTGTCTAATCATTAGGAAAGCTTCCAGTGACATTGTTGCAACATTCTGATTGGTTTTAGCTTCTTAATATGGGCGGCCAGGACCTTTTTGCTTTACTACTTGAAATATAATTAGAACCTCAACATTGGCTTGTTTTAATTCAGAGAATGGCTTCAACCCGTGGTCCAACTGCTTGTTCTGTTGAGCATCATGATTGGAATCTTTTAGTTTGTTTTGTCAAATCAGTTCCAGACCAAAAGAGATGCGTCACTGACGCAGTGTGGCCTTCTCACAGTGAACTGACTGAGACATTTAACCTGATTCTATTCCAATCACAGGCCAGACAACTTCCTACCCGTCAGGGATATAATGGTGCAATGTACTGAAAAAGCCTTTGCTTAATTTGTGTACTTTTGTTAACATTGATGTTTGTTTACCGTCAACAGAAGTGCTTGATTTGTTGAGTTTTTTTTCCTGGTATGTCATCCTCTATTTAGTTGTACTTATTTATGTTTAATTCCAAAATGACTGTAGAAAAAAAGCTTAATGTGTGTGTAAGAGGTGATTTCACACTTTTCGGGAAGCTTCTTAAGACTGAGGGTTCAGACGGCCAACTGTAGTATATCTCCATCCCGGCCCCACACCCAGCAGGTGATAAACAAGGCAATAATGAAGGCTCGACTATGCAAAACGCACTTGTTAATTTCTTCCCTTTTTTTATTTCTAATATAAATACAACATCGATACTATGCATTTGGCTATAAGAGCTCGTCTTTAGGAAGCTCAGGAGTTTCAGATACAGCAACACTAACAGACAACCATTTCCTTTAATTATCAGACACATTCAGAGAGAAGCCAACATCCCTTAAAATGCACCTGTTCACATGTTATAATGCTACATGCCAAGTACACAATTTTTCCTATACATCAAAGTGCAATGTCACAATAGATTAACTCTAGGATTCATAATTCAGTCTTCTACTAAAACATTTTGATTATTTCATTCTAAGTGCTGCTGCTCTTCGTTCAGGACATGCGTGAGTGGATTACAACTCCCCACAAAGGAAAGGGTAAAAAAAAGGCACTTTCACATTGGCACACACATCCCCAGGACTcctcaaacatgcacacacaccagttCCCAACCCAGTAAAGAGGACACATTCAGTGTGCTGTTGTTCAAGTGTATTTTGGGCATTTACACCCAAGAGCCCCACCCGGTTTGCTTACTGTGAACTTAAGGTTATTTAGTGACTTCAGTgtaacacaaacagacacactatATTCCCACACACAAAACTAAGTGCCAGCACACACGCACCCCTGTCCTGCACATGTTCTGGTACTAGAGGCAGACATGAATAATCCATTTTATCCACCATCGCACTTACAAAGGAACAGAACGAGGGCAggcagagaaaacacacacacacacagacaaacagggcAATGGGGAAAGAAATCACACATACCCAGGCTGAGGGAAACGTACTCTACAAACTCCTAACCCCCTGTACCTCCAAACGATTTCCCCTGGCCTGAGTGTGTGTATCGGTTGAACACAAGAGAAGGCTGTTTTCTAGTAGTGAGGGTTAACGCCACCGCTGGCCCTGTGACATTAGTGCCCACTGAACATTCAATAGAGAGCTGAACGTAATTAAATACGGGAACATTCATTAAAATAGCTGAACATTGGTTAAATAGAATGTGAGTTTTGTCACCAATGCCTCGAGAGGCTTCAGTTGAGGCATTAGTGAGCTTAGCAGCGGAACCAagtgaaatagaaaataaaaaagatCAGACATCC

Function

NR:

description
UPF0536 protein C12orf66 homolog

GO: NA

KEGG:

id description
K23297 C12ORF66; KICSTOR complex protein C12orf66

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563482.2 True 3529 mRNA 0.49 3 48852579 48859532

Neighbor

gene id symbol gene type direction distance location
LOC110490205 LOC106576033 coding upstream 69545 48775456 ~ 48783034 (+)
LOC110490204 LOC106576029 coding upstream 84686 48757205 ~ 48767893 (+)
lamtor4 LOC106576032 coding upstream 99813 48750150 ~ 48752766 (+)
LOC110490196 tnpo3 coding upstream 342747 48492575 ~ 48509832 (+)
LOC110490194 calu coding upstream 372702 48470021 ~ 48479877 (+)
LOC110490216 LOC106609152 coding downstream 95538 48955070 ~ 48957811 (+)
LOC118938892 NA coding downstream 133645 48993177 ~ 48993971 (+)
LOC118938811 NA coding downstream 151789 49011321 ~ 49015350 (+)
LOC118938893 NA coding downstream 176460 49035992 ~ 49036786 (+)
LOC110490217 LOC106576042 coding downstream 192383 49051915 ~ 49058766 (+)
G1301285 NA non-coding upstream 84343 48767980 ~ 48768236 (+)
G1301366 NA non-coding upstream 121018 48727392 ~ 48731561 (+)
G1301358 NA non-coding upstream 143195 48709140 ~ 48709384 (+)
G1301357 NA non-coding upstream 144104 48708197 ~ 48708475 (+)
G1301355 NA non-coding upstream 145523 48706722 ~ 48707056 (+)
G1301434 NA non-coding downstream 34006 48893538 ~ 48893741 (+)
G1301439 NA non-coding downstream 39156 48898688 ~ 48898972 (+)
G1301446 NA non-coding downstream 48986 48908518 ~ 48908726 (+)
G1301450 NA non-coding downstream 57464 48916996 ~ 48917271 (+)
G1301461 NA non-coding downstream 75661 48935193 ~ 48935406 (+)
G1301200 NA other upstream 267316 48584707 ~ 48585263 (+)
kiss2 kiss2 other upstream 492140 48359799 ~ 48360553 (+)
G1300598 LOC106575986 other upstream 904687 47946368 ~ 47947892 (+)
G1299894 NA other upstream 1281916 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 2536577 46293582 ~ 46316075 (+)
G1301458 NA other downstream 70514 48930046 ~ 48930588 (+)
G1301706 NA other downstream 535691 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 538926 49398275 ~ 49410313 (+)
G1303015 NA other downstream 1318742 50178274 ~ 50178565 (+)
G1303095 LOC106609233 other downstream 1441913 50301445 ~ 50302351 (+)

Expression


Co-expression Network