LOC110490216 (LOC106609152)



Basic Information


Item Value
gene id LOC110490216
gene name LOC106609152
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48955070 ~ 48957811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021563483.2
TGCTCCACATCTTTGCCAAGCCAACACAAATGTTGGTCTGTGCGCAAAGAGCGAGTTTATGTAGACGATAGACTAAGAATTGCTCACATTTAAAGCTAGGTGGCAGCAGGTGTCGTGCGCGCGGATTGGTTCAGGAGAGTCAGGCACTTCTCCGGAGACGCATTCTTCCCTTCAGAGAGCTCACTCACCCTCATGGAAGAAAATGTGAACATAGGCTTCGACCCTACCGGCAAGCCGGGGATGATGGAGGACCCTGGGAACGACACCGGCACTTTTGGGAACTCCAGCGACCCGTTTGGCCGGAACGAGGAGGTCGCCAAGATCGAGATCACGGTGCTTAGCGTGACATTCTTCGTGGCTGTGGTGGGGAACCTGAGCGTGCTGCTGGCCATGTACATGAGCCGACGGAAGCCCTTGCGCATGCACCTGTTCATGAAACACCTGAGCCTCGCGGACTTGGCTGTGGCCTTTTTCCAGGTGCTGCCGCAGCTCTGTTGGGAGATCACCTTCCGCTTCTACGGGCCTGACCTTCTGTGTCGTATCGTCAAGCACCTGCAGGTGCTAGGGATGTTCGCGTCCACCtacatgatggtgatgatgacgcTGGACCGCTACATCGCAATCTGTCACCCGATGCAGAACATTCACCAGCCCACGCAGCGCGCCTATATGATGATCGGGGCCACCTGGGTGTGTAGTCTTGCCCTGAGCATGCCCCAGTATTTCATCTTCTCACTGAGCGAGGTCCGCCCGGGCTCGGCCGTGTATGACTGCTGGGGACACTTCATCCAGCCGTGGGGTGTGCGCGCCTACATCACCTGGATCACCGTGGGCATCTTCCTCGTGCCCGTGGCCGTGCTCATGCTCTGCTACGGCTTCATCTGCCGATCCATCTGGCTGAACATAAAGTACAAGACCCAGAAGAGCACGATTGCGATGGCACTTGTGACCAAGAATAGGCTGATCGGAAAGAGTTCAGTCAGCAGCATCACCACAATCTCGCGCGCCAAGCTGCGCACAGTGAAGATGACTTTTGTGATCGTGCTGGCGTACGTGGTGTGCTGGGCTCCGTTTTTCACCGTACAGATGTGGTCGGTGTGGGATGAGAGCTTTTCGTGGGATGactccgAGAACACCGCAGTCATCATCTCAGCTCTGCTGGCCAGTCTGAATAGCTGCTGTAACCCGTGGATCTACATGATCTTCAGCGGCCACCTCCTCTCTGACATGGTCCACTGTCTGCCGTGCTGCCGGAGGCTGTTCCACAGGTTCGGCCATCAGGATTCGAACAGCAGCATCCGCCACACCACACTCCTGACCCGGGTACCACTCCCGGCCCTACCCCGGCGGAGCTCAGAGAAAAGCTCTTGCAAAGATTGCATTCACCACTCCCACAGGAACTGTCAATCAATCCCGGTGGAGTCTTGACCCCGTGCTCACACTAAACACTGTCCATATGGTTCAGTTTATGTGCCACAGCGACGACGGCTGTcgtatgttcaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataacc

Function


NR:

description
arg8-vasotocin receptor-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021563483.2 True 1604 mRNA 0.55 2 48955070 48957811

Neighbor


gene id symbol gene type direction distance location
LOC110490215 LOC106576040 coding upstream 95538 48852579 ~ 48859532 (+)
LOC110490205 LOC106576033 coding upstream 172036 48775456 ~ 48783034 (+)
LOC110490204 LOC106576029 coding upstream 187177 48757205 ~ 48767893 (+)
lamtor4 LOC106576032 coding upstream 202304 48750150 ~ 48752766 (+)
LOC110490196 tnpo3 coding upstream 445238 48492575 ~ 48509832 (+)
LOC118938892 NA coding downstream 35366 48993177 ~ 48993971 (+)
LOC118938811 NA coding downstream 53510 49011321 ~ 49015350 (+)
LOC118938893 NA coding downstream 78181 49035992 ~ 49036786 (+)
LOC110490217 LOC106576042 coding downstream 94104 49051915 ~ 49058766 (+)
LOC110490219 LOC100286412 coding downstream 107831 49065642 ~ 49106682 (+)
G1301472 NA non-coding upstream 8518 48946353 ~ 48946552 (+)
G1301468 NA non-coding upstream 11965 48942553 ~ 48943105 (+)
G1301462 NA non-coding upstream 18010 48936776 ~ 48937060 (+)
G1301461 NA non-coding upstream 19664 48935193 ~ 48935406 (+)
G1301450 NA non-coding upstream 37799 48916996 ~ 48917271 (+)
G1301480 NA non-coding downstream 1071 48958882 ~ 49046095 (+)
G1301489 NA non-coding downstream 17812 48975623 ~ 48981348 (+)
G1301490 NA non-coding downstream 25138 48982949 ~ 48987048 (+)
G1301684 NA non-coding downstream 388282 49346093 ~ 49346309 (+)
G1301458 NA other upstream 24482 48930046 ~ 48930588 (+)
G1301200 NA other upstream 369807 48584707 ~ 48585263 (+)
kiss2 kiss2 other upstream 594631 48359799 ~ 48360553 (+)
G1300598 LOC106575986 other upstream 1007178 47946368 ~ 47947892 (+)
G1299894 NA other upstream 1384407 47569830 ~ 47570663 (+)
G1301706 NA other downstream 437412 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 440647 49398275 ~ 49410313 (+)
G1303015 NA other downstream 1220463 50178274 ~ 50178565 (+)
G1303095 LOC106609233 other downstream 1343634 50301445 ~ 50302351 (+)
LOC110490250 LOC106609227 other downstream 1401399 50358439 ~ 50372219 (+)

Expression



Co-expression Network