LOC110490217 (LOC106576042)


Basic Information

Item Value
gene id LOC110490217
gene name LOC106576042
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 49051915 ~ 49058766 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563485.2
TTTTATATTACGTGaggaacttttattttgaaaatgtcAGAAATTCAGAGATCCGGAAGTACCGTTTTAGTGTTGCTGACTGACACTTATTAAGCAGACCCTCTTACCAAACAGTGCGTAAACCCAACGTAGCCTACGTTGTTATTAACCGGTGAAGTGTTTGTCCACCATGGTTGGGACTTTCCCGCTTCTGTCAGTGCAGCCAACGCGGGGGCTCGTGGATGAGAAGATCCAGGTAGTTGTGAGGAATTTACCGCCAGCGCTCTCAGTGACACTACATTCCCTTCATCGCTCTGAGGATAAGGACCTTTGGGAGGCGTTCGGCCATTACACCAGCGACGGCCAAGGCATGGTGACAGTTGCTAAGGATGCCAGTCTTGGAGGAACATATGAAGGAGCAGAGCCCATGGGTCTACTGTGGAGCATGCAGCCTGTTGCAGGCAGTCGGACAGGCCTCAGgttGAGAAAGATGGATGTCCTCACTCCTAATGTGGTACACATCTCTGTGTACAGTGGGCACATGACTGAGGGCTTCAGCAAGCAGTCTCCTCTAGCGACCGTTGTCACAGAACGATGGTACATGGCACCGGGTGTGTGCAGAATTGACATCAGGGAACATGGAGTCCGAGGGACCCTCTTTTTACCCCCAGGTCCTGGACCCTTCCCTGGGGTGTTGGATAtgtggggagggggtggggggctgGTGGAGTACCGCTCCTGCCTCCTGGCGTCACACGGTTTTGTTTCCATGGCGCTAGAGTACCTTTCCTATGACAAGAACGGAACCTCAGACATCGAATCAAAAACCTACTTTGAGAAAGCGTTCAGGATTGTGCAGGAGCACCCTCTGGTGATGAAGGACAGAGTTGCTCTGTTTGGTCTCTCCTTAGGCGCGTCAGTCGCCCTCAACTTGGCAGCCTACTCCAAAGACATCAGCCCCAAAtgctgtgtgtgtatcagtgggaGTCACGTCAACCCTGTCAACAAGCCTATCGGCGAAGTGTTTAGAAAGATGAACAAGGATGGGTATAAGACCCGATTTGATGAAGAGGGCCGTGTGGTCTGGAGAGACATCATTCTGCCTATCCCAACCGACCTTGGAGAGAAAGTGGATATGGGGAGGATAAAGTGTCCATTGATGTTGGTCGTCGGGGAGGATGATCAGAACTGGGCCACAGTGGAGTCTGCCAAGGACATGACCCAGATGATGTGTGCAGCGGGCAACGAGCACCTACTGACCATTCTACAATACCCTGATGCTGGACACCTCATTGAGCCGCCCTACACACCCCACTTCAGAGCCAGCAACTTCATAGTGCTGCAAACACGACAGAAAGTGATCATGTTATGGGGAGGGTACACCAAGCCGCATGCTGATGCTCAGGAAGACTGTTGGGAGAAGATCCTTAGCTTCCTACGGCAACACCTCTACCCCAGCCCTGACTCTGTCCCTAAGGccaatctgtgatgtcactgaCCTAGTATCAAGGACCTAGTATGATTGACTAAGCTATaacttttatttttaaatacaatAACACTTTATATTTTAAGTCTAATTATTTTAGTGGGTGAGAGGGTTCTTCTAAGCTAATAATTATACGTAACATAATTATTTTTGCGAGACAGGATTCTCGATACCACTCTAACGACCAAGTGAAGAATCTTATAGTGTGTGACCCCTGTCTTGCCATGTCATTTAGTGAGCGCACCACTGCGTTGTCAAGACTTAAAACGTCAGGAAAGACAGTCGTTTAATGTGACAGGCTCAGCGATAGGATTTGGAAATTTGTGTGGTGTACACTTGGTTTTAGctattctttttttaaattacttaaaatattgaatttggtctttactactatagcccatagaaacgcattgaataacacattcataaatggcaaaaaagacagtccaaaaatgtatcataaggaataagattttttttttttgtgagaagaccaatttttgaGATGTCTCGGTttgacaaacaccactgtagctcagtcaccttccacctcagatGTGGAATGTCGACATAGGCGGATGTGgcggattgagacacagcccaagAAAAAAATCTGATATTAATCTTAAACTGACAGTATTTTGGGTACATCAATATACTCTTAAGGATTAATATTTATGAAATGACTGAGAgtcatcagaccagtggacacAGCTGTACAACATAAATTGAGGGCTGATGAGGAGTGTCCACAGTAGTGGGTCAGAGTCTCTCATTCACTGAACTGCATGAGTTTCAACCTGCCAATAGTGTTAACACCTGTGCCTGAAACCTAACTGCCATAGCACACAGATGATTGATTCTATTTTTTGATTCATGAGGAAATAATAGGAAATGTATTGTCCATGATGTTTATAATAAATCAGAGGAAGAATATGAACAATATCTGTAATTGAGCACA
>XM_021563484.2
CACTTATTAAGCAGACCCTCTTACCAAACAGTGCGTAAACCCAACGTAGCCTACGTTGTTATTAACCGGTGAAGTAAGTAACAGTCCTTTGAGAAAAATCTTGCCGCCTTTGTGAAGATGAATCATGCATAGGCCTACAGTTCATCGCTATGGGTTTCTAGTTGCTGTAACTTTGTGAGCAGTGCCGCACGGACTTTGTACTTTCCTGCACGAGTAAACTTGTCTACTCGCACCAGAATTATGTGTTTGTCCACCATGGTTGGGACTTTCCCGCTTCTGTCAGTGCAGCCAACGCGGGGGCTCGTGGATGAGAAGATCCAGGTAGTTGTGAGGAATTTACCGCCAGCGCTCTCAGTGACACTACATTCCCTTCATCGCTCTGAGGATAAGGACCTTTGGGAGGCGTTCGGCCATTACACCAGCGACGGCCAAGGCATGGTGACAGTTGCTAAGGATGCCAGTCTTGGAGGAACATATGAAGGAGCAGAGCCCATGGGTCTACTGTGGAGCATGCAGCCTGTTGCAGGCAGTCGGACAGGCCTCAGgttGAGAAAGATGGATGTCCTCACTCCTAATGTGGTACACATCTCTGTGTACAGTGGGCACATGACTGAGGGCTTCAGCAAGCAGTCTCCTCTAGCGACCGTTGTCACAGAACGATGGTACATGGCACCGGGTGTGTGCAGAATTGACATCAGGGAACATGGAGTCCGAGGGACCCTCTTTTTACCCCCAGGTCCTGGACCCTTCCCTGGGGTGTTGGATAtgtggggagggggtggggggctgGTGGAGTACCGCTCCTGCCTCCTGGCGTCACACGGTTTTGTTTCCATGGCGCTAGAGTACCTTTCCTATGACAAGAACGGAACCTCAGACATCGAATCAAAAACCTACTTTGAGAAAGCGTTCAGGATTGTGCAGGAGCACCCTCTGGTGATGAAGGACAGAGTTGCTCTGTTTGGTCTCTCCTTAGGCGCGTCAGTCGCCCTCAACTTGGCAGCCTACTCCAAAGACATCAGCCCCAAAtgctgtgtgtgtatcagtgggaGTCACGTCAACCCTGTCAACAAGCCTATCGGCGAAGTGTTTAGAAAGATGAACAAGGATGGGTATAAGACCCGATTTGATGAAGAGGGCCGTGTGGTCTGGAGAGACATCATTCTGCCTATCCCAACCGACCTTGGAGAGAAAGTGGATATGGGGAGGATAAAGTGTCCATTGATGTTGGTCGTCGGGGAGGATGATCAGAACTGGGCCACAGTGGAGTCTGCCAAGGACATGACCCAGATGATGTGTGCAGCGGGCAACGAGCACCTACTGACCATTCTACAATACCCTGATGCTGGACACCTCATTGAGCCGCCCTACACACCCCACTTCAGAGCCAGCAACTTCATAGTGCTGCAAACACGACAGAAAGTGATCATGTTATGGGGAGGGTACACCAAGCCGCATGCTGATGCTCAGGAAGACTGTTGGGAGAAGATCCTTAGCTTCCTACGGCAACACCTCTACCCCAGCCCTGACTCTGTCCCTAAGGccaatctgtgatgtcactgaCCTAGTATCAAGGACCTAGTATGATTGACTAAGCTATaacttttatttttaaatacaatAACACTTTATATTTTAAGTCTAATTATTTTAGTGGGTGAGAGGGTTCTTCTAAGCTAATAATTATACGTAACATAATTATTTTTGCGAGACAGGATTCTCGATACCACTCTAACGACCAAGTGAAGAATCTTATAGTGTGTGACCCCTGTCTTGCCATGTCATTTAGTGAGCGCACCACTGCGTTGTCAAGACTTAAAACGTCAGGAAAGACAGTCGTTTAATGTGACAGGCTCAGCGATAGGATTTGGAAATTTGTGTGGTGTACACTTGGTTTTAGctattctttttttaaattacttaaaatattgaatttggtctttactactatagcccatagaaacgcattgaataacacattcataaatggcaaaaaagacagtccaaaaatgtatcataaggaataagattttttttttttgtgagaagaccaatttttgaGATGTCTCGGTttgacaaacaccactgtagctcagtcaccttccacctcagatGTGGAATGTCGACATAGGCGGATGTGgcggattgagacacagcccaagAAAAAAATCTGATATTAATCTTAAACTGACAGTATTTTGGGTACATCAATATACTCTTAAGGATTAATATTTATGAAATGACTGAGAgtcatcagaccagtggacacAGCTGTACAACATAAATTGAGGGCTGATGAGGAGTGTCCACAGTAGTGGGTCAGAGTCTCTCATTCACTGAACTGCATGAGTTTCAACCTGCCAATAGTGTTAACACCTGTGCCTGAAACCTAACTGCCATAGCACACAGATGATTGATTCTATTTTTTGATTCATGAGGAAATAATAGGAAATGTATTGTCCATGATGTTTATAATAAATCAGAGGAAGAATATGAACAATATCTGTAATTGAGCACA
>XM_021563486.2
GTCGAATAACTTAGTCTAGGTGTTTGTCCACCATGGTTGGGACTTTCCCGCTTCTGTCAGTGCAGCCAACGCGGGGGCTCGTGGATGAGAAGATCCAGGTAGTTGTGAGGAATTTACCGCCAGCGCTCTCAGTGACACTACATTCCCTTCATCGCTCTGAGGATAAGGACCTTTGGGAGGCGTTCGGCCATTACACCAGCGACGGCCAAGGCATGGTGACAGTTGCTAAGGATGCCAGTCTTGGAGGAACATATGAAGGAGCAGAGCCCATGGGTCTACTGTGGAGCATGCAGCCTGTTGCAGGCAGTCGGACAGGCCTCAGgttGAGAAAGATGGATGTCCTCACTCCTAATGTGGTACACATCTCTGTGTACAGTGGGCACATGACTGAGGGCTTCAGCAAGCAGTCTCCTCTAGCGACCGTTGTCACAGAACGATGGTACATGGCACCGGGTGTGTGCAGAATTGACATCAGGGAACATGGAGTCCGAGGGACCCTCTTTTTACCCCCAGGTCCTGGACCCTTCCCTGGGGTGTTGGATAtgtggggagggggtggggggctgGTGGAGTACCGCTCCTGCCTCCTGGCGTCACACGGTTTTGTTTCCATGGCGCTAGAGTACCTTTCCTATGACAAGAACGGAACCTCAGACATCGAATCAAAAACCTACTTTGAGAAAGCGTTCAGGATTGTGCAGGAGCACCCTCTGGTGATGAAGGACAGAGTTGCTCTGTTTGGTCTCTCCTTAGGCGCGTCAGTCGCCCTCAACTTGGCAGCCTACTCCAAAGACATCAGCCCCAAAtgctgtgtgtgtatcagtgggaGTCACGTCAACCCTGTCAACAAGCCTATCGGCGAAGTGTTTAGAAAGATGAACAAGGATGGGTATAAGACCCGATTTGATGAAGAGGGCCGTGTGGTCTGGAGAGACATCATTCTGCCTATCCCAACCGACCTTGGAGAGAAAGTGGATATGGGGAGGATAAAGTGTCCATTGATGTTGGTCGTCGGGGAGGATGATCAGAACTGGGCCACAGTGGAGTCTGCCAAGGACATGACCCAGATGATGTGTGCAGCGGGCAACGAGCACCTACTGACCATTCTACAATACCCTGATGCTGGACACCTCATTGAGCCGCCCTACACACCCCACTTCAGAGCCAGCAACTTCATAGTGCTGCAAACACGACAGAAAGTGATCATGTTATGGGGAGGGTACACCAAGCCGCATGCTGATGCTCAGGAAGACTGTTGGGAGAAGATCCTTAGCTTCCTACGGCAACACCTCTACCCCAGCCCTGACTCTGTCCCTAAGGccaatctgtgatgtcactgaCCTAGTATCAAGGACCTAGTATGATTGACTAAGCTATaacttttatttttaaatacaatAACACTTTATATTTTAAGTCTAATTATTTTAGTGGGTGAGAGGGTTCTTCTAAGCTAATAATTATACGTAACATAATTATTTTTGCGAGACAGGATTCTCGATACCACTCTAACGACCAAGTGAAGAATCTTATAGTGTGTGACCCCTGTCTTGCCATGTCATTTAGTGAGCGCACCACTGCGTTGTCAAGACTTAAAACGTCAGGAAAGACAGTCGTTTAATGTGACAGGCTCAGCGATAGGATTTGGAAATTTGTGTGGTGTACACTTGGTTTTAGctattctttttttaaattacttaaaatattgaatttggtctttactactatagcccatagaaacgcattgaataacacattcataaatggcaaaaaagacagtccaaaaatgtatcataaggaataagattttttttttttgtgagaagaccaatttttgaGATGTCTCGGTttgacaaacaccactgtagctcagtcaccttccacctcagatGTGGAATGTCGACATAGGCGGATGTGgcggattgagacacagcccaagAAAAAAATCTGATATTAATCTTAAACTGACAGTATTTTGGGTACATCAATATACTCTTAAGGATTAATATTTATGAAATGACTGAGAgtcatcagaccagtggacacAGCTGTACAACATAAATTGAGGGCTGATGAGGAGTGTCCACAGTAGTGGGTCAGAGTCTCTCATTCACTGAACTGCATGAGTTTCAACCTGCCAATAGTGTTAACACCTGTGCCTGAAACCTAACTGCCATAGCACACAGATGATTGATTCTATTTTTTGATTCATGAGGAAATAATAGGAAATGTATTGTCCATGATGTTTATAATAAATCAGAGGAAGAATATGAACAATATCTGTAATTGAGCACA

Function

NR:

description
acyl-coenzyme A thioesterase 5-like isoform X1

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0016790 thiolester hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563485.2 False 2432 mRNA 0.46 10 49051915 49058766
XM_021563484.2 False 2518 mRNA 0.46 10 49051998 49058766
XM_021563486.2 True 2295 mRNA 0.46 10 49052290 49058766

Neighbor

gene id symbol gene type direction distance location
LOC118938893 NA coding upstream 15129 49035992 ~ 49036786 (+)
LOC118938811 NA coding upstream 36565 49011321 ~ 49015350 (+)
LOC118938892 NA coding upstream 57944 48993177 ~ 48993971 (+)
LOC110490216 LOC106609152 coding upstream 94104 48955070 ~ 48957811 (+)
LOC110490215 LOC106576040 coding upstream 192383 48852579 ~ 48859532 (+)
LOC110490219 LOC100286412 coding downstream 6876 49065642 ~ 49106682 (+)
LOC110490220 LOC106576044 coding downstream 51531 49110297 ~ 49241050 (+)
LOC110490226 ifrd1 coding downstream 324467 49383233 ~ 49394324 (+)
LOC110490228 NA coding downstream 339509 49398275 ~ 49410313 (+)
foxp2 LOC106609245 coding downstream 621765 49680531 ~ 49794962 (+)
G1301480 NA non-coding upstream 5820 48958882 ~ 49046095 (+)
G1301490 NA non-coding upstream 64867 48982949 ~ 48987048 (+)
G1301489 NA non-coding upstream 70567 48975623 ~ 48981348 (+)
G1301472 NA non-coding upstream 105363 48946353 ~ 48946552 (+)
G1301468 NA non-coding upstream 108810 48942553 ~ 48943105 (+)
G1301684 NA non-coding downstream 287327 49346093 ~ 49346309 (+)
G1301706 NA non-coding downstream 337660 49395223 ~ 49396921 (+)
G1301708 NA non-coding downstream 338992 49397758 ~ 49398022 (+)
G1301727 NA non-coding downstream 372040 49430806 ~ 49431122 (+)
G1301458 NA other upstream 121327 48930046 ~ 48930588 (+)
G1301200 NA other upstream 466652 48584707 ~ 48585263 (+)
kiss2 kiss2 other upstream 691476 48359799 ~ 48360553 (+)
G1300598 LOC106575986 other upstream 1104023 47946368 ~ 47947892 (+)
G1299894 NA other upstream 1481252 47569830 ~ 47570663 (+)
G1303015 NA other downstream 1119508 50178274 ~ 50178565 (+)
G1303095 LOC106609233 other downstream 1242679 50301445 ~ 50302351 (+)
LOC110490250 LOC106609227 other downstream 1300444 50358439 ~ 50372219 (+)

Expression


Co-expression Network