LOC110490220 (LOC106576044)


Basic Information

Item Value
gene id LOC110490220
gene name LOC106576044
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 49110297 ~ 49241050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563489.2
TCCCAGCATGCAGCATTGTGGGATACGGAGGAGACTGGTGGATGCTGATGCTGAAGCGCGAGCTGCTGAGGATTGAGACACGAGCGCAAGGGGAGCATCATCCAAACACTTTGTGATACCAGATTCCCAGCTGGCCTGACCGACCGACCCACCAGTCAGCATGAACTACCTACGCAGGCGTCTGTCCGACAGCAGCTTTGTGGCCAACCTCCCCAACGGCTACATGATGGACCTGCAGAGTGGGCCTCGCCCTAACCcgccctcctccacctccaatcCCGCCTCCCCAGCCACGGAGAGGCGAACGCCCCCCAGCCTGCCACCACAGGCCCCGGCTTCAAGCTCGGCCCCGGCCCCGACCCCCGGGGGTTTCCTCAGCTCCTTCTCCAGCGTGGTGAAGACCGCCCAGTTGGCACAGAACGCCGCAGCAGCAGCCAAGGCTTCAGCGGCGGTGGCAGAAGCTGCACCAGCAGCGCCCGCCAAACCTGTCATACGGAAGCCCAAGATTCTACTGGTCATCGACGATCTGCACAcagactgGGCCAAGTATTTCCGAGGGAAGAAGTTGAACGGGGAGTGCGACATCCGGGTGGAGCAGGCAGAGTTCTCAGAGATCAACCTGGCTTCGTACATGAACACTGGGTGTATGATTGATATGCAGGCCATAAGAGGAGGAACCAAAGTGGTCAGatccttcaagcCAGACTTTGTCCTGATTCGCCAGCATGCCTACAGCATGACTCCGGGCGAAGACTTCAGGAGCCTGGTGATTGGCCTTCAATACGGGGGAGTCGCCAGCATCAACTCCCTGCTCTCCATCTACAACTTTTGCAGCAAACCCTGGGTGTTTTCCCACATGATTGAGCTCTACCACTCCCTGGGCCCAGAGAAGTTCCCACTGAACGAACAGACCTTCTACCCCAACCACACCCAGATGGTGACAACACCAACGTTCCCCGTGGTGGTCAAGATGGGCCATGCCCACGCCGGCATTGGcaagATCAAAGTGGAGAACGAACTTGACTTCCAGGATATTACCAGTGTGGTGGCGCTGGCCAGAATCTATGCCACCTCTGAGCCTTACATCCTGTCCAAGTACGACATCAGGATCCAGAAAATCGGCAACAACTACAAGGCCTACATGAGGACGTCCATCTCTGGCAACTGGAAGGCTAACACAGGCTCAGCCATGCTGGAACAGATCGCTATGACAGACAGATATCGTGCGTGGGTGGACTCCTGTGCCGAGATGTTCGGGGGCCTTGACATCTGTGCTGTGAAAGCCGTCCACGGGAAAGATGGCAACGACTACATTATCGAGGTGATGGACAGTTCCATGCCTCTGATTGGTGAGCACGTGGAGGAGGACAGGCAGCTGATCACTGATCTAGTGATCAATAAGATGTGCAGCGTGCTGCTCGGGATCAACACACCACAGCCCATCGCTGTGAAGCCACAGACGACCCAGCCAAGAAGGGCCCAAGGTGGGCATCACTCTGGATCTAGTTCTCCCTCCCAGTCAGCCCAGGGTTCTCCTCAGCGAGCCCGCTCAGCTAACACCTCTCCCAGCCAGGCCTTCCAGCCCGGACCCATCCCACCTCCCGTTGCCACCGGCCCCTGCTCCCAGAAACAACCTCCTCAACTGAACAAATCCCAGTCGCTCACCAACACCTTCACTGAGACCCTGAAAGGGAACGCCACGGACGACGAGGCCAAGGCAGAGACCATCCGCAGCCTGCGGCAGTCCTTCGCCAGCCTCTTCTCCGACTAACTTCAACAGACTCCTCATATCCATCCGCCTACTATCAGCCATTAGCCATCGGCCTCCAGAAGAGCTCCAAGCTACCAATCTGTTACAGAGCGCGCTCAGTCAACCCACAGAGCAGAAGCTTCCTGTCCACCACTTCCTACTTTCTGTTCTTATCCATAAATGGCAGGTAGAGAGCATCCACCTTTCAGAATCATccgtcaaataaaaaaaatactaaattggGCTGTAGTTCATCTTGTACTGCTTGGTTGGTGTAGTTCAGATGTCAGTTTGCATTCTGTTTGTCATTTCATCAAATGTTCATCATCTGATTCATTCTTTTGTTTTGGTCATAATGTGTTTATCAACTTCAAGGATGTTGATATACTTTGGAAGATAAAGGATATATTGCAGTATTTAGAAATGACCCATAATAGTGTATGAGCTCGGTTCACCAGCAATGCTTAGCATCTTGCCAGTCTCATTTCACAGAAATACTATTGCCATATTGATTGGCTGATTTAGTTACTATATAATGATTTGTGATTTTGCTTTGGCATTTGATTACCAAAGTGATTTTTGATTCAAATCCCTTGTATTAGGTCCAAATAGTttaggctatatactgtacctgtcaaTTTGCAATTTTACAAGGCGGAAATATTATCTTAAGTCTTCCATCACAGACAATTCTTCCCTAAGCTCTAAGTTTTCTGAACTATCCAATGTAAATAGCGCTATgaacaattttttaaaatttggGGCATTtgattaaccccccccccccccatcacattataatagagaaggaCAGACTAATCACATGACTGGCTAGTTTATCCTTTTGACTTTAAGTGCAAACATTTTAAGTCTCTGCGCCCACATAGATTTTCTGTTTAAGGTATCATTTTTGACTGGTATGAAAAATGACAATTCTATTTCATGGATGGAATATTGTCCCCATACTTTATTTGTAGTAATTGCACTTCAAGTCGCACTATCAGCAATATGGGTGAAATGAATCTTGCTCTCCAACTTAATTTAAATACATGTAACAATTATTAAGATTGTCTTTTCACTTTCAAACTGTATTTATTGTCCTGAACATATATGCCAATCATAGTAAGGTATTATTATCAAAATGGACCAAATGATGTGTTTGTATTTGAACACCTGTGTGTTTGAATTATTTTGTCTCTGTTACATGTGAAATGCTTCTACAATTGAAAAGCCATAACAAAACTATGATTCACTGAAAATCTGGAtgttgaaaaaaatctaaatgtttaCTCGTTATCACTGTGAGTGTTAGTTATGCGTCTAAGAATTCAATCATTTTGCTTCTACTGGTGATGACTTATAGTGTACATGGTATAATGCTGTAAACTTGTGAATGCCACACCTCCATATTTGGGTGCCACACATCCATTGTGATTTATTTACTCATTTGCTAATTGACCATTTCAGTAAGCAAATAATGTTAATTAACTACTGAAGAAATTCAGAATTGAGTGGTGATGAGGTCACCTAGTAACTACCTCAATTCCAGCAAGCTGTGATGCTAGTAGTAGTTACCACTAATACTCTGAAGTGAGTGAAATTAAGACAAAAGAAGGGAATGGCTTTTCATTTGACCTAATCTGTATGTCTGCATGTAATCCTACAATTTGAATCCTAACATTCATACAGTAAAGTTGATGTACTGTGCTGTCTCTCAAGTAGTTATTCTCTGTTAGTAAAAAGGCAATACACCCATAGATGAGTCTGCTATCTACAGTCAATAACTAAATGAATATGACATGGGTTTTCACATCACGATTTACATGTCATTGCAATGAAGAATTGAACGGCAATAGCCATTATATTTAACGGCAATAGCCAGGTGTTTATTAAAGTGGGCCCAATGCCATTCAACAGATGCTCAGAGGTCATCGACCCCACCGTTGAATAGCCGTCCTCCTCTCTTATTTCCTATCCAACAGAACTTACCGTCACATGTCCTCTTATGGTGAGCATCTGCTGGAaggcattgtgtgcccccccctgTGTGTTATTGAAATAAGTGTGGCATGAAAACTGACCCCCGGTGTGCCTCTGGTGGAACAACGTCATGTAAATAATTGCTGTTGTCTGGCTGCTTACAATGTATGAAGTGTGTGATGcataatgtgtgtttgtgttattaaTGCAAGTCATTGTaacattgttttgtttatttgttcAGTTTTTATTAAAAGTGACATATTTTATTACA

Function

NR:

description
synapsin-3-like isoform X1

GO: NA

KEGG:

id description
K19941 SYN; synapsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563489.2 True 4004 mRNA 0.46 14 49110297 49241050

Neighbor

gene id symbol gene type direction distance location
LOC110490219 LOC100286412 coding upstream 3615 49065642 ~ 49106682 (+)
LOC110490217 LOC106576042 coding upstream 51531 49051915 ~ 49058766 (+)
LOC118938893 NA coding upstream 73511 49035992 ~ 49036786 (+)
LOC118938811 NA coding upstream 94947 49011321 ~ 49015350 (+)
LOC118938892 NA coding upstream 116326 48993177 ~ 48993971 (+)
LOC110490226 ifrd1 coding downstream 142183 49383233 ~ 49394324 (+)
LOC110490228 NA coding downstream 157225 49398275 ~ 49410313 (+)
foxp2 LOC106609245 coding downstream 439481 49680531 ~ 49794962 (+)
LOC110490234 LOC106576051 coding downstream 597473 49838523 ~ 49863700 (+)
LOC118938923 NA coding downstream 778567 50019617 ~ 50023828 (+)
G1301480 NA non-coding upstream 64202 48958882 ~ 49046095 (+)
G1301490 NA non-coding upstream 123249 48982949 ~ 48987048 (+)
G1301489 NA non-coding upstream 128949 48975623 ~ 48981348 (+)
G1301472 NA non-coding upstream 163745 48946353 ~ 48946552 (+)
G1301684 NA non-coding downstream 105043 49346093 ~ 49346309 (+)
G1301706 NA non-coding downstream 155376 49395223 ~ 49396921 (+)
G1301708 NA non-coding downstream 156708 49397758 ~ 49398022 (+)
G1301727 NA non-coding downstream 189756 49430806 ~ 49431122 (+)
G1301728 NA non-coding downstream 191799 49432849 ~ 49433060 (+)
G1301458 NA other upstream 179709 48930046 ~ 48930588 (+)
G1301200 NA other upstream 525034 48584707 ~ 48585263 (+)
kiss2 kiss2 other upstream 749858 48359799 ~ 48360553 (+)
G1300598 LOC106575986 other upstream 1162405 47946368 ~ 47947892 (+)
G1299894 NA other upstream 1539634 47569830 ~ 47570663 (+)
G1303015 NA other downstream 937224 50178274 ~ 50178565 (+)
G1303095 LOC106609233 other downstream 1060395 50301445 ~ 50302351 (+)
LOC110490250 LOC106609227 other downstream 1118160 50358439 ~ 50372219 (+)

Expression


Co-expression Network