LOC110490226 (ifrd1)


Basic Information

Item Value
gene id LOC110490226
gene name ifrd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 49383233 ~ 49394324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563496.2
AACCTCACCACATTAACGCAACCCTAGTTTTTTTTTGAGGGAAAATGTATCGTCTTCGCCAACAGTCTTTCTCCAGGATCGCTTTTAATTCCTTTTTCTCTACCGTGCCACGGGAAGATTGTCAATTTATGAGACAGTTTAATAAAAACTGGTCGTGTATCGGCTGATTTTTGCTCATATTTTCATACGTATCCGCACGAAAATGCCAAGGTCCAAGAAGAGGAGTTCCAGGGGGGGGCAGCATGGAGCTGTGCAGCCTTTCAGTGATGAGGATGCCTCCATCGAGACCCTCAGCCGCTGCAGCAGCTTCAGTGATGCCATGAGTGTGGCAGAGGAAGGAGGGGAGGCTGGTGAGGAGACAGCCCAGGAGGATTTACAGTACAAGCTGAAGGTTTTCATTGACAGCACTGTGGATAAGAGTGCCAAGACCAGACAGGGAGCCCTGGATGGGCTGAAGGCTGCCATGGCAACTAGGATCCTGTACGAGTTCATTTCAGACAGGAGGATGACCATCACTGACAGCATTGAGCGCTGTCTCAAGAAAGGTAAAGGACCGGAGCAGTGTGCAGCAGCCTCCCTGGCCTGTCTGCTGTGTATTCAGCTGGGCTCAGGCGTTGAGAGCGAAGAGGTGTTCAAGACCCTCAAACCCATCTTCAAGAACATTCTGTTGGATGGAGCAGCCAACATCCAAGCCAGACAAGCTTGTGCAACAAGTTTGGGCCTGTGCACTCTGGTGGCGGAAGATGACATCCTGGATGTGTATGCTACCATGGAGAGCTTTGAGAGTTTGTTCATGCGTTCCTATGTGAAGGAGGATGGGAGTCGCCCCTCTCTCAACCCCCAGACCACCCTGCTCCACACCAACGCCCTCCTCTCCTGGGCCCTGCTGCTCACAATCTGCACAGGCAGCCAGGTCAAAGCAGTCACACACAAGCACCTGCCCAAACTACCCCGGTTGTTGGAGAATGATGACGTCAACATGAGGATAGCAGCAGGAGAGACCATCGCTCTGCTGTTTGAGCTGGCTAGGGACATGGACCCTGAGTTTGAGTATGATGACTGGGAGCCCCTGTGTGACAAGCTCAACTCTCTGGCCACCGACTGCAACAAACACCGTGCCAAGACTGACAAGAGGAAGCAGAGGTCTGTGTTCAGGGACGTGCTCAAGGCTGTGGAGgagagagaTTTTCAGACTGAGACAATCCGCTTCAGCACCGAGCGTATGACCATCGACAGCTGGGTGAGGAAGAGGACTTACGACGCCTTCAGAGAGTTTGTGGGCTCTGGCATGAACTACCACCTACAGGCCAATGAGTTTATTCGCGACGTGTTTCAACTGGGACCCCCCATGCTGGTTGACGCGGCCACACTGAAGTCCATGAAAATCTCCCGCTTCGAAAGGCATCTCTACAATGCGGCTGCATTCAAGGCTCGGACAAAGGCCAGGAACAAGTTCAGAGACAAGAGGGTTGACGTCGGGGAGTTTTGATGTGATTTAATGGGTCCAACCTGCTCTTTTATTAACCATCAATTGAACCTTCTTGAATATCACTGTTACTATCCTTAATTTATCCAGTTAAGTGTTTGGTATTTGTAAATATGAATAATCATGTCTGTCTCAAGTGattctctattccccataggctTGCCAGTGtctatgtagggaataaagtGTTATGTGAGGTGTAGACTTTGTTGCTCTGTTTTAATGTTTGTGTTCCATTAACATTGAGTTATAATATTTGAAAATGCACTAATTGGTTAACGTTTCCTATGGACTTCCCCTTGGGCCCTGGTTTATTGTCTGGTGTTTTGTTATACACAGATTATACCAAGCATTAGGATACCTTCCTAGTATTtagttgccctcagaacaggctcaatttgccggggcatggactacaagtctaccacatggatgctggctcatgttgactccaatgtttaccactgttgtcatgttggctggatgtcctttgggtggtggaccattcctgatacaCACGGGGAAACGGTGTGTATACCCTGtggtgttgcagttcttgacacaagccGGTGCGCCTGGCACGTACTGCAATACCCTGTTTTAAAGGCATTTAAATCTCTTGCCTGTTCATCTTCTGAATAGCACACATgacacaatccacgtctcaaggcttaaaaatcactCTTTAACCCGTCTcattcccttcatctacactggtgGAAGAggctttaacaagtgacatcaataagggctcatagctttcacctggtcagtttgtcCATGTAAAGAGCGGGggtgttaatgttttgtacactcagtgtagtttaTGTCTATTGGATGTGAGAAACTCAAATAAATACTAACTGAACTAG

Function

symbol description
ifrd1 Predicted to be active in nucleus. Orthologous to human IFRD1 (interferon related developmental regulator 1).

NR:

description
interferon-related developmental regulator 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563496.2 True 2358 mRNA 0.48 11 49383233 49394324

Neighbor

gene id symbol gene type direction distance location
LOC110490220 LOC106576044 coding upstream 142183 49110297 ~ 49241050 (+)
LOC110490219 LOC100286412 coding upstream 276551 49065642 ~ 49106682 (+)
LOC110490217 LOC106576042 coding upstream 324467 49051915 ~ 49058766 (+)
LOC118938893 NA coding upstream 346447 49035992 ~ 49036786 (+)
LOC118938811 NA coding upstream 367883 49011321 ~ 49015350 (+)
LOC110490228 NA coding downstream 3951 49398275 ~ 49410313 (+)
foxp2 LOC106609245 coding downstream 286207 49680531 ~ 49794962 (+)
LOC110490234 LOC106576051 coding downstream 444199 49838523 ~ 49863700 (+)
LOC118938923 NA coding downstream 625293 50019617 ~ 50023828 (+)
LOC110490236 LOC106609240 coding downstream 767620 50161944 ~ 50170265 (+)
G1301684 NA non-coding upstream 36924 49346093 ~ 49346309 (+)
G1301480 NA non-coding upstream 337138 48958882 ~ 49046095 (+)
G1301490 NA non-coding upstream 396185 48982949 ~ 48987048 (+)
G1301489 NA non-coding upstream 401885 48975623 ~ 48981348 (+)
G1301706 NA non-coding downstream 2102 49395223 ~ 49396921 (+)
G1301708 NA non-coding downstream 3434 49397758 ~ 49398022 (+)
G1301727 NA non-coding downstream 36482 49430806 ~ 49431122 (+)
G1301728 NA non-coding downstream 38525 49432849 ~ 49433060 (+)
G1302201 NA non-coding downstream 51821 49446145 ~ 49488630 (+)
G1301458 NA other upstream 452645 48930046 ~ 48930588 (+)
G1301200 NA other upstream 797970 48584707 ~ 48585263 (+)
kiss2 kiss2 other upstream 1022794 48359799 ~ 48360553 (+)
G1300598 LOC106575986 other upstream 1435341 47946368 ~ 47947892 (+)
G1299894 NA other upstream 1812570 47569830 ~ 47570663 (+)
G1303015 NA other downstream 783950 50178274 ~ 50178565 (+)
G1303095 LOC106609233 other downstream 907121 50301445 ~ 50302351 (+)
LOC110490250 LOC106609227 other downstream 964886 50358439 ~ 50372219 (+)

Expression


Co-expression Network