LOC110490228


Basic Information

Item Value
gene id LOC110490228
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 49398275 ~ 49410313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563497.2
GAAAGCGGTACACCAAGTTGGGAACAAATAGTCAGATGCATCTTTCATGCCTAGGGTTTCCACTTACGTTGGCAACGGAATGGTCTCCATCTAAAGTTCTGGCAGGTAGTAGTGGGCCTATTTGGAAACCCGatcctctgctctgtctctcgaGACAAATTTAGTCGGGATAAATGGATCCTCACGCAaaaggaggacacacacacacacaatgctgtgATAATAACACTGTATCCGCCGGGATTATTGAGGTAACAACCACACAAGTTTATTGTGATCCAGTTTGGAAATCCTGTATCTTTCGGGCTTCATTTTTCTCCTGCAAACTGATGGCCCTAACATCAGAGACGATGACAGAGATTTGTCTAGACCTGGACTGCTTCGACGAGGAGAGGAAACTGTACTCGGCAGAATCACTGAACGACCTCCACAAGATGAACTTGTGCTCCAACCCCAAGGACCTGCTGAAACTCACAGAACAGCCAATGAGCTCTCAGACCACACCCACTGCTGAGGAAAGAAGAGACTGCCTGGGTGGTGTGACGCAGCTGGTAAATGTACACAGTGCTGTTGGCATCGAAGAGGAGCGCATCAAGACTCTACACACCAGTGATGTAGAGGAGGGCAGTAAAACATCACACACTCACCCTCGACCCAGACTGTTCCtcatcctcttcatcctcccgACTTTGGCTCTGCTGCTGATCCTGGTGCTGTCTGCCTACGCTGTCTTACTCATGGTCGAGACAGCATCTAGGATGGGTGAGTTAGCAGGCGTTAGTGAGGTGGAGAGGACTTACCTGGAGGAGATGAGACAGTGGAAGACTCTCCTTCAGCAGTACCTGGACCTCAGCCAGAACCACTGCTCATAGTGAGATACAGGAGGCCAGGGTGCATTGGAAGACACCTGTGAGTGAGCAGCACGAGCCAGCTAGCGCTCTGGCAGTGGAGCCAACGCCTCAGCGGGAACCCGACTTTATCTCCTCTTTAGAAACATTGCCTAGGAGCCCAAAACACAGCCACCCTGacaggaagggagagacaggagccAATACTGAATACTTTACCTATATCATGTGCTAAACACCCTTTCATTCCCTTAATATGCTGGTGAGTGAGACTATTCTGTACCCTTTCGTAGCCTCCTTACACTGGTTAATAAAAACATTATTATACTT
>TU1485120
ACGCAaaaggaggacacacacacacacaatgctgtgATAATAACACTGTATCCGCCGGGATTATTGAGGTAACAACCACACAAGTTTATTGTGATCCAGTTTGGAAATCCTGTATCTTTCGGGCTTCATTTTTCTCCTGCAAACTGATGGCCCTAACATCAGAGACGATGACAGAGATTTGTCTAGACCTGGACTGCTTCGACGAGGAGAGGAAACTGTACTCGGCAGAATCACTGAACGACCTCCACAAGATGAACTTGTGCTCCAACCCCAAGGACCTGCTGAAACTCACAGAACAGCCAATGAGCTCTCAGACCACACCCACTGCTGAGGAAAGAAGAGATACAGGAGGCCAGGGTGCATTGGAAGACACCTGTGAGTGAGCAGCACGAGCCAGCTAGCGCTCTGGCAGTGGAGCCAACGCCTCAGCGGGAACCCGACTTTATCTCCTCTTTAGAAACATTGCCTAGGAGCCCAAAACACAGCCACCCTGacaggaagggagagacaggagccAATACTGAATACTTTACCTATATCATGTGCTAAACACCCTTTCATTCCCTTAATATGCTGGTGAGTGAGACTATTCTGTACCCTTTCGTAGCCTCCTTACACTGGTTAATAAAAACATTATTATACTTCCTCTTGTCCTGGGTTTCCTTATACAGTATAATTGAGATGTCAGTATCTCAATAGGACTAACCTGGATACACGATAAAGGATATACAGTATAAACCCATAAGGAAAATAATAATC

Function

NR:

description
uncharacterized protein LOC110490228

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563497.2 False 1178 mRNA 0.49 6 49398275 49410198
TU1485120 True 759 TUCP 0.46 4 49398458 49410313

Neighbor

gene id symbol gene type direction distance location
LOC110490226 ifrd1 coding upstream 3951 49383233 ~ 49394324 (+)
LOC110490220 LOC106576044 coding upstream 157225 49110297 ~ 49241050 (+)
LOC110490219 LOC100286412 coding upstream 291593 49065642 ~ 49106682 (+)
LOC110490217 LOC106576042 coding upstream 339509 49051915 ~ 49058766 (+)
LOC118938893 NA coding upstream 361489 49035992 ~ 49036786 (+)
foxp2 LOC106609245 coding downstream 270333 49680531 ~ 49794962 (+)
LOC110490234 LOC106576051 coding downstream 428325 49838523 ~ 49863700 (+)
LOC118938923 NA coding downstream 609419 50019617 ~ 50023828 (+)
LOC110490236 LOC106609240 coding downstream 751746 50161944 ~ 50170265 (+)
LOC110490239 NA coding downstream 772622 50182820 ~ 50187125 (+)
G1301708 NA non-coding upstream 253 49397758 ~ 49398022 (+)
G1301706 NA non-coding upstream 1354 49395223 ~ 49396921 (+)
G1301684 NA non-coding upstream 51966 49346093 ~ 49346309 (+)
G1301480 NA non-coding upstream 352180 48958882 ~ 49046095 (+)
G1301727 NA non-coding downstream 20608 49430806 ~ 49431122 (+)
G1301728 NA non-coding downstream 22651 49432849 ~ 49433060 (+)
G1302201 NA non-coding downstream 35947 49446145 ~ 49488630 (+)
G1302242 NA non-coding downstream 99332 49509530 ~ 49510799 (+)
G1302318 NA non-coding downstream 136520 49546718 ~ 49546993 (+)
G1301458 NA other upstream 467687 48930046 ~ 48930588 (+)
G1301200 NA other upstream 813012 48584707 ~ 48585263 (+)
kiss2 kiss2 other upstream 1037836 48359799 ~ 48360553 (+)
G1300598 LOC106575986 other upstream 1450383 47946368 ~ 47947892 (+)
G1303015 NA other downstream 768076 50178274 ~ 50178565 (+)
G1303095 LOC106609233 other downstream 891247 50301445 ~ 50302351 (+)
LOC110490250 LOC106609227 other downstream 949012 50358439 ~ 50372219 (+)
G1303641 NA other downstream 1337164 50747362 ~ 50747715 (+)
G1303804 NA other downstream 1661627 51071825 ~ 51073294 (+)

Expression


Co-expression Network