LOC110490847 (LOC106576105)


Basic Information

Item Value
gene id LOC110490847
gene name LOC106576105
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 49444609 ~ 49446782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564283.2
GAGAGTATCACCATGACGATGTTGACCATATTTCTGCTTCTGAGCGCTGCCTTTGCTCTGGGTGATGCAAGAGATCTGAATGACACAGAGAATCAAATTATTGAGAATCTGATACGCAACCTGCCAATCGAGTCTGAGGAGATGGGAGCGAAGGAGAAGCGGGAACTACAAACCAGGAGTTCATCATGCCCACCTGGTTGGCACAGATATGGGACACACTGCTATCACTACGTCCCCATCATGGCCAAATGGCCAGAGGCAGAGCATTACTGTTTGCTATTGGGAGGTAACCTGGCGTCAGTGCACAGCCTCTCCCAGTATAACTTCCTTCGAACAGTCATCCTAAGTAGTGCCAATGGAGCCCAGCGCACCTGGATTGGAGCCAACGATGCCATCAAGGAGGGTCTTTGGCTGTGGAGCGATGGGTCCAGGTTTAGCTACCAGAACTGGGGCAAGGGGCAACCCGATAACTACAACTATGTTGCTGGGAACGACAACACGAATGGCCGTGAGCATTGTATGGAGATGAACCATGGAGATGACTTCGGGCAGAATGATGCAGCCTGCTGGACGCAACTTCCATTCATGTGTTCCAGAAAGCTGTAATATCGACCGATTGGGAGAAAATTCATGTTCTAACGTTACtcccctggttagtctgtcatcatgtttcgtGTACTTTTAGATTCTTGCTGATTTCATTCAGGTGATTGTATTGCCTTATCTTGATGATTGATGATTACTGATTATGTGAAGTGACTTTGGGTGTCTAAAAAGCgcttaaaataaaatgtattattaca

Function

NR:

description
ladderlectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564283.2 True 803 mRNA 0.47 6 49444609 49446782

Neighbor

gene id symbol gene type direction distance location
LOC110490225 NA coding downstream 68766 49372284 ~ 49375843 (-)
LOC110490224 LOC106609251 coding downstream 72683 49315673 ~ 49371926 (-)
LOC110490222 LOC106576046 coding downstream 138914 49264705 ~ 49305695 (-)
LOC110490221 timp3 coding downstream 248937 49177182 ~ 49195672 (-)
LOC118938810 LOC106576042 coding downstream 425766 49013740 ~ 49018843 (-)
LOC110490229 LOC106576106 coding upstream 39534 49486316 ~ 49488678 (-)
LOC110490230 LOC106609249 coding upstream 49879 49496661 ~ 49513418 (-)
LOC110490232 LOC106576049 coding upstream 162436 49608361 ~ 49612631 (-)
LOC118938922 NA coding upstream 167154 49613936 ~ 49614562 (-)
LOC118938812 LOC106576050 coding upstream 224552 49671334 ~ 49682202 (-)
G1302191 NA non-coding downstream 7745 49436662 ~ 49436864 (-)
G1302181 NA non-coding downstream 27951 49416419 ~ 49416658 (-)
G1302178 NA non-coding downstream 29309 49414933 ~ 49415300 (-)
G1302166 NA non-coding downstream 61674 49382666 ~ 49382935 (-)
G1302159 NA non-coding downstream 66990 49375971 ~ 49377619 (-)
G1302313 NA non-coding upstream 93466 49540248 ~ 49540456 (-)
G1302362 NA non-coding upstream 141015 49587797 ~ 49588005 (-)
G1302380 NA non-coding upstream 153540 49600322 ~ 49600907 (-)
G1302564 NA non-coding upstream 154851 49601633 ~ 49601838 (-)
G1302570 NA non-coding upstream 160013 49606795 ~ 49607186 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 605458 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 1740571 47584674 ~ 47707520 (-)
tbc1d22a tbc1d22a other downstream 2224994 47217532 ~ 47405004 (-)
tafa5a fam19a5 other downstream 2491185 46822067 ~ 46995100 (-)
G1298541 LOC106575995 other downstream 3146657 46295361 ~ 46297952 (-)
G1302602 NA other upstream 217169 49663951 ~ 49664296 (-)
LOC110490244 LOC106609225 other upstream 852682 50290050 ~ 50301082 (-)
LOC110490264 LOC106576080 other upstream 1752447 51199223 ~ 51205927 (-)
LOC110490744 LOC106576129 other upstream 2339849 51785488 ~ 51793354 (-)
G1304896 LOC107662719 other upstream 2474713 51921495 ~ 51922528 (-)

Expression


Co-expression Network