LOC110490229 (LOC106576106)



Basic Information


Item Value
gene id LOC110490229
gene name LOC106576106
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 49486316 ~ 49488678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021563498.1
TGTATATAGCTGCTCCCCTTTCTAAAACAGAACAGAACCTACCAGAGATTCCTTATACATCAGGAAAGTATCACCATGACGATGTTGACCATATTTCTGCTTCTCAGCGCTGCCTTTACTCTGGGTGATGCAAGGGATCTGAATGACACAGAGAATCAAATTATTGAGAACCTGATACGCAACCTGCCAATCGAGTCTGAGGAGATGGGAGCGAAGGAGAAAGGGGGACTACAAACCAGGAGTTCATCATGCCCACCTGGTTGGCACAGATATGGGACACACTGCTATCACTACGTCCCCATCATGGCCAAATGGCCAGAGGCAGAGcaTTACTGTTTGCTATTGGGAGGTAACCTGGCGTCAGTACACAGCCTCTCTCAGTATAACTTCCTTCAGTCAGTCATACGAAGTAGTGCCAACGGAGCCCAGCGCACCTGGATTGGAGCCAACGATGCCATCAAGGAGGGTCTTTGGCTGTGGAGTGATGGGTCCAGGTTTAGCTACCAGAACTGGGGCAAGGGGCAACCCGATAACTACATCCATGTTGCTGGGAACGACAACACGAATGGCCGTGAGCATTGTATGGAGATGAACTATGGAGATGACTTCGGGCAGAATGATTCACCCTGCTGGACGAAACGTCCATTCATGTGTTCCAGAAAGCTGTAATATCTACCGACTGGGAGAGAATTCATGTTCTAACGTTACTCCCCTCATGTTTAGTGTACTTTTAGATTTTTGCTGATTTTAATGAGATTCTATTGCCTTATCTTGATGATTATTGCTAATTATGTAAAGTGACTTTGGGTGTCTTGAAAAGCACTTGtagtaatacattttagaaattctATATTATCTGAGAGGCTCTCAGGTGatgggattcttcaataaagtcagTCTGTAATATTT

Function


NR:

description
galactose-specific lectin nattectin-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021563498.1 True 909 mRNA 0.45 7 49486316 49488678

Neighbor


gene id symbol gene type direction distance location
LOC110490847 LOC106576105 coding downstream 39534 49444609 ~ 49446782 (-)
LOC110490225 NA coding downstream 110473 49372284 ~ 49375843 (-)
LOC110490224 LOC106609251 coding downstream 114390 49315673 ~ 49371926 (-)
LOC110490222 LOC106576046 coding downstream 180621 49264705 ~ 49305695 (-)
LOC110490221 timp3 coding downstream 290644 49177182 ~ 49195672 (-)
LOC110490230 LOC106609249 coding upstream 7983 49496661 ~ 49513418 (-)
LOC110490232 LOC106576049 coding upstream 120540 49608361 ~ 49612631 (-)
LOC118938922 NA coding upstream 125258 49613936 ~ 49614562 (-)
LOC118938812 LOC106576050 coding upstream 182656 49671334 ~ 49682202 (-)
LOC110490235 LOC106576052 coding upstream 615658 50104336 ~ 50144944 (-)
G1302191 NA non-coding downstream 49452 49436662 ~ 49436864 (-)
G1302181 NA non-coding downstream 69658 49416419 ~ 49416658 (-)
G1302178 NA non-coding downstream 71016 49414933 ~ 49415300 (-)
G1302166 NA non-coding downstream 103381 49382666 ~ 49382935 (-)
G1302159 NA non-coding downstream 108697 49375971 ~ 49377619 (-)
G1302313 NA non-coding upstream 51570 49540248 ~ 49540456 (-)
G1302362 NA non-coding upstream 99119 49587797 ~ 49588005 (-)
G1302380 NA non-coding upstream 111644 49600322 ~ 49600907 (-)
G1302564 NA non-coding upstream 112955 49601633 ~ 49601838 (-)
G1302570 NA non-coding upstream 118117 49606795 ~ 49607186 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 647165 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 1782278 47584674 ~ 47707520 (-)
tbc1d22a tbc1d22a other downstream 2266701 47217532 ~ 47405004 (-)
tafa5a fam19a5 other downstream 2532892 46822067 ~ 46995100 (-)
G1298541 LOC106575995 other downstream 3188364 46295361 ~ 46297952 (-)
G1302602 NA other upstream 175273 49663951 ~ 49664296 (-)
LOC110490244 LOC106609225 other upstream 810786 50290050 ~ 50301082 (-)
LOC110490264 LOC106576080 other upstream 1710551 51199223 ~ 51205927 (-)
LOC110490744 LOC106576129 other upstream 2297953 51785488 ~ 51793354 (-)
G1304896 LOC107662719 other upstream 2432817 51921495 ~ 51922528 (-)

Expression



Co-expression Network