LOC110490232 (LOC106576049)


Basic Information

Item Value
gene id LOC110490232
gene name LOC106576049
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 49608361 ~ 49612631 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563499.2
AGAGACAAGACGCGTCTTGGATCACAAATCGGATCAGTGCGCATGCTCCGTCCGTTCCGTTTACTGTATATTCACTGTGGTAAAAGGGCAGGCAGGCAACAAACCaagcttcttctttttttttttttagcaaagtGGCTTCTACAATGTAAATAAGCTCCAAGGAAACCAAAAGGAATATCAACAGGTATGCTTTTAATTTACATCTTAGCAGTCCTTTCGATTTTTATTGGCCTAGTTACTGTGGCTTTGGATTCCAGTCAATTCATAGCGGGTACTTGGAAATTCTTCTGCCTAATGGACGTGCGGATTCGCTACACGGTAATGTTCAATCCAACAGTGAACGGTATTTTTAGGTGTGATGAGACAAAAGAACAAAGGATGCCGTAGAAGAGAGGCTGCTTACAAGCCGGGAATCTGCTTCAAAACACAACAAATGGATCTATCACCTCCCCCTGCCGCCTCCAGATAATGATACTTGGCTGAAGCTACTACATCTTTATGATCCCTCCTCCATCTATGGCGAACTATAGCCATGCAGGGGACCACAACATCTTGCAGAATGTCTCTCCTCTCGCCACGTTTCTCAAACTGACATCCCTGGGTTTTATCATTGGAGTCGGCGTCGTTGGCAACCTCCTGATCTCCATCCTACTGGTCAAAGACAAAAGCCTGCACCGCGCACCATACTACTTCCTGCTGGACCTGTGCGCCTCGGACATCCTGCGCTCCGCCATCTGCTTCCCCTTCGTCTTCACCTCTGTCAAGAATGGTTCCACCTGGACGTACGGCACGCTTACATGCAAAGTGATAGCCTTCCTGGGGGTGCTGTCCTGCTTTCACACAGCGTTCATGCTCTTCTGTGTGAGTGTGACACGCTACCTGGCCATAGCCCACCATCGCTTCTACACCAAGAGGCTCACCTTCTGGACGTGTTTGGCAGTCATCTGCATGGTGTGGACGTTGTCGGTGGCCATGGCCTTCCCCCCGGTGCTGGACGTAGGGACGTACTCCTTCATAAGGGAGGAGGACCAGTGTACATTCCAGCACCGCTCGTTCAGAGCCAACGACTCCCTGGGCTTCATGCTGCTCCTCGCCCTGATCCTCCTGGCCACCCAGCTTGTCTACCTCAAGCTAATCTTCTTCGTCCACGACCGCCGGAAGATGAAACCAGTCCAATTCGTGCCTGCCGTCAGCCAGAACTGGACCTTCCATGGTCCCGGGGCCAGCGGCCAGGCAGCGGCTAACTGGCTGGCGGGGTTCGGCAGGGGCCCCACCCCGCCCACCCTGCTGGGCATCAGGCAGAACAGCAATGCAGCGGGCCGGCGACGCCTGCTGGTGCTGGACGAGTTTAAGACTGAGAAGAGGATAAGTAGGATGTTCTACATCATGACCTTCTTCTTCCTCACACTGTGGGGCCCCTACCTAGTGGCCTGCTATTGGAGGGTGTTTGCCAGGGGCCCCGCGGTCCCAGGGGGGTACCTGACCGCGGCGGTGTGGATGAGCTTCGCCCAGGCGGGAGTCAACCCCTTTATCTGCATCTTCTCCAACAGGGAGCTCCGGCGCTGCTTCAGCACCACTCTCCTTTACTGCAGAAAGTCCAGGTTACCTAGGGAACCCTACTGCGTTATATGAAGGCTTGGGTTGTTTTTTTCCCTTCCACTTCTCCACTGATTGATCTCAATTTGGGTTTGGTCCCATTGTacagctctctttctcttcatcctccagtttctcctcctcctcctccttccctctcttctgaGGCAGAAGTTGGACTGTCAATCACTCCCTTGGTTCTGTGATTGAACATCAAACATGGAGGTTGAAGGGAATGAAATAAGCAGGCAGCTGAGAACCCCTCCTATGTTTATGTTCTAGTAAACAACTGCTGTGGAAGGTTATTTAGAAGCAGAGAAGACGAAGAAAAAGGAATCATTGGTGAAACTACAAAATCAAAGGACTGAGCCCTTGCTTTGGATATTTTGAAGATAATTATTTGAGGTAAAAGATTTTGGTGAAAAAAACCCACAGAAAACTAAGAAACGATTTCCTCTAAAGAGTCACTGGAATTGTTTTACATTTAAAAGTTGCACTAAAAAGAAGATGTAAAGATGCTTTTTTTGATCTACGGTTGCATTGCAAGATGCAAGGACAACTTGTTTCCCCCCCTAACTAAACAATGAATGCTTTACTTTGCAACAGACATCCCATTCGCTGTATGTAAAGCAAAACAATGTTCGGTGACTAACTGTTGGAATACACCTTCACAAGAGGATTAAATTGGTTTTAATGTAAGTGATATCTTTTTCAttttggggggcgg
>XM_036944500.1
AGAGACAAGACGCGTCTTGGATCACAAATCGGATCAGTGCGCATGCTCCGTCCGTTCCGTTTACTGTATATTCACTGTGGTAAAAGGGCAGGCAGGCAACAAACCaagcttcttctttttttttttttagcaaagtGGCTTCTACAATGTAAATAAGCTCCAAGGAAACCAAAAGGAATATCAACAGGTATTTTTAGGTGTGATGAGACAAAAGAACAAAGGATGCCGTAGAAGAGAGGCTGCTTACAAGCCGGGAATCTGCTTCAAAACACAACAAATGGATCTATCACCTCCCCCTGCCGCCTCCAGATAATGATACTTGGCTGAAGCTACTACATCTTTATGATCCCTCCTCCATCTATGGCGAACTATAGCCATGCAGGGGACCACAACATCTTGCAGAATGTCTCTCCTCTCGCCACGTTTCTCAAACTGACATCCCTGGGTTTTATCATTGGAGTCGGCGTCGTTGGCAACCTCCTGATCTCCATCCTACTGGTCAAAGACAAAAGCCTGCACCGCGCACCATACTACTTCCTGCTGGACCTGTGCGCCTCGGACATCCTGCGCTCCGCCATCTGCTTCCCCTTCGTCTTCACCTCTGTCAAGAATGGTTCCACCTGGACGTACGGCACGCTTACATGCAAAGTGATAGCCTTCCTGGGGGTGCTGTCCTGCTTTCACACAGCGTTCATGCTCTTCTGTGTGAGTGTGACACGCTACCTGGCCATAGCCCACCATCGCTTCTACACCAAGAGGCTCACCTTCTGGACGTGTTTGGCAGTCATCTGCATGGTGTGGACGTTGTCGGTGGCCATGGCCTTCCCCCCGGTGCTGGACGTAGGGACGTACTCCTTCATAAGGGAGGAGGACCAGTGTACATTCCAGCACCGCTCGTTCAGAGCCAACGACTCCCTGGGCTTCATGCTGCTCCTCGCCCTGATCCTCCTGGCCACCCAGCTTGTCTACCTCAAGCTAATCTTCTTCGTCCACGACCGCCGGAAGATGAAACCAGTCCAATTCGTGCCTGCCGTCAGCCAGAACTGGACCTTCCATGGTCCCGGGGCCAGCGGCCAGGCAGCGGCTAACTGGCTGGCGGGGTTCGGCAGGGGCCCCACCCCGCCCACCCTGCTGGGCATCAGGCAGAACAGCAATGCAGCGGGCCGGCGACGCCTGCTGGTGCTGGACGAGTTTAAGACTGAGAAGAGGATAAGTAGGATGTTCTACATCATGACCTTCTTCTTCCTCACACTGTGGGGCCCCTACCTAGTGGCCTGCTATTGGAGGGTGTTTGCCAGGGGCCCCGCGGTCCCAGGGGGGTACCTGACCGCGGCGGTGTGGATGAGCTTCGCCCAGGCGGGAGTCAACCCCTTTATCTGCATCTTCTCCAACAGGGAGCTCCGGCGCTGCTTCAGCACCACTCTCCTTTACTGCAGAAAGTCCAGGTTACCTAGGGAACCCTACTGCGTTATATGAAGGCTTGGGTTGTTTTTTTCCCTTCCACTTCTCCACTGATTGATCTCAATTTGGGTTTGGTCCCATTGTacagctctctttctcttcatcctccagtttctcctcctcctcctccttccctctcttctgaGGCAGAAGTTGGACTGTCAATCACTCCCTTGGTTCTGTGATTGAACATCAAACATGGAGGTTGAAGGGAATGAAATAAGCAGGCAGCTGAGAACCCCTCCTATGTTTATGTTCTAGTAAACAACTGCTGTGGAAGGTTATTTAGAAGCAGAGAAGACGAAGAAAAAGGAATCATTGGTGAAACTACAAAATCAAAGGACTGAGCCCTTGCTTTGGATATTTTGAAGATAATTATTTGAGGTAAAAGATTTTGGTGAAAAAAACCCACAGAAAACTAAGAAACGATTTCCTCTAAAGAGTCACTGGAATTGTTTTACATTTAAAAGTTGCACTAAAAAGAAGATGTAAAGATGCTTTTTTTGATCTACGGTTGCATTGCAAGATGCAAGGACAACTTGTTTCCCCCCCTAACTAAACAATGAATGCTTTACTTTGCAACAGACATCCCATTCGCTGTATGTAAAGCAAAACAATGTTCGGTGACTAACTGTTGGAATACACCTTCACAAGAGGATTAAATTGGTTTTAATGTAAGTGATATCTTTTTCAttttggggggcgg
>XM_036944501.1
AGAGACAAGACGCGTCTTGGATCACAAATCGGATCAGTGCGCATGCTCCGTCCGTTCCGTTTACTGTATATTCACTGTGGTAAAAGGGCAGGCAGGCAACAAACCaagcttcttctttttttttttttagcaaagtGGCTTCTACAATGTAAATAAGCTCCAAGGAAACCAAAAGGAATATCAACAGGTATGCTTTTAATTTACATCTTAGCAGTCCTTTCGATTTTTATTGGCCTAGTTACTGTGGCTTTGGATTCCAGTCAATTCATAGCGGGTACTTGGAAATTCTTCTGCCTAATGGACGTGCGGATTCGCTACACGGTATTTTTAGGTGTGATGAGACAAAAGAACAAAGGATGCCGTAGAAGAGAGGCTGCTTACAAGCCGGGAATCTGCTTCAAAACACAACAAATGGATCTATCACCTCCCCCTGCCGCCTCCAGATAATGATACTTGGCTGAAGCTACTACATCTTTATGATCCCTCCTCCATCTATGGCGAACTATAGCCATGCAGGGGACCACAACATCTTGCAGAATGTCTCTCCTCTCGCCACGTTTCTCAAACTGACATCCCTGGGTTTTATCATTGGAGTCGGCGTCGTTGGCAACCTCCTGATCTCCATCCTACTGGTCAAAGACAAAAGCCTGCACCGCGCACCATACTACTTCCTGCTGGACCTGTGCGCCTCGGACATCCTGCGCTCCGCCATCTGCTTCCCCTTCGTCTTCACCTCTGTCAAGAATGGTTCCACCTGGACGTACGGCACGCTTACATGCAAAGTGATAGCCTTCCTGGGGGTGCTGTCCTGCTTTCACACAGCGTTCATGCTCTTCTGTGTGAGTGTGACACGCTACCTGGCCATAGCCCACCATCGCTTCTACACCAAGAGGCTCACCTTCTGGACGTGTTTGGCAGTCATCTGCATGGTGTGGACGTTGTCGGTGGCCATGGCCTTCCCCCCGGTGCTGGACGTAGGGACGTACTCCTTCATAAGGGAGGAGGACCAGTGTACATTCCAGCACCGCTCGTTCAGAGCCAACGACTCCCTGGGCTTCATGCTGCTCCTCGCCCTGATCCTCCTGGCCACCCAGCTTGTCTACCTCAAGCTAATCTTCTTCGTCCACGACCGCCGGAAGATGAAACCAGTCCAATTCGTGCCTGCCGTCAGCCAGAACTGGACCTTCCATGGTCCCGGGGCCAGCGGCCAGGCAGCGGCTAACTGGCTGGCGGGGTTCGGCAGGGGCCCCACCCCGCCCACCCTGCTGGGCATCAGGCAGAACAGCAATGCAGCGGGCCGGCGACGCCTGCTGGTGCTGGACGAGTTTAAGACTGAGAAGAGGATAAGTAGGATGTTCTACATCATGACCTTCTTCTTCCTCACACTGTGGGGCCCCTACCTAGTGGCCTGCTATTGGAGGGTGTTTGCCAGGGGCCCCGCGGTCCCAGGGGGGTACCTGACCGCGGCGGTGTGGATGAGCTTCGCCCAGGCGGGAGTCAACCCCTTTATCTGCATCTTCTCCAACAGGGAGCTCCGGCGCTGCTTCAGCACCACTCTCCTTTACTGCAGAAAGTCCAGGTTACCTAGGGAACCCTACTGCGTTATATGAAGGCTTGGGTTGTTTTTTTCCCTTCCACTTCTCCACTGATTGATCTCAATTTGGGTTTGGTCCCATTGTacagctctctttctcttcatcctccagtttctcctcctcctcctccttccctctcttctgaGGCAGAAGTTGGACTGTCAATCACTCCCTTGGTTCTGTGATTGAACATCAAACATGGAGGTTGAAGGGAATGAAATAAGCAGGCAGCTGAGAACCCCTCCTATGTTTATGTTCTAGTAAACAACTGCTGTGGAAGGTTATTTAGAAGCAGAGAAGACGAAGAAAAAGGAATCATTGGTGAAACTACAAAATCAAAGGACTGAGCCCTTGCTTTGGATATTTTGAAGATAATTATTTGAGGTAAAAGATTTTGGTGAAAAAAACCCACAGAAAACTAAGAAACGATTTCCTCTAAAGAGTCACTGGAATTGTTTTACATTTAAAAGTTGCACTAAAAAGAAGATGTAAAGATGCTTTTTTTGATCTACGGTTGCATTGCAAGATGCAAGGACAACTTGTTTCCCCCCCTAACTAAACAATGAATGCTTTACTTTGCAACAGACATCCCATTCGCTGTATGTAAAGCAAAACAATGTTCGGTGACTAACTGTTGGAATACACCTTCACAAGAGGATTAAATTGGTTTTAATGTAAGTGATATCTTTTTCAttttggggggcgg
>TU1486066
CTGGACGAGTTTAAGACTGAGAAGAGGATAAGTAGGATGTTCTACATCATGACCTTCTTCTTCCTCACACTGTGGGGCCCCTACCTAGTGGCCTGCTATTGGAGGGTGTTTGCCAGGGGCCCCGCGGTCCCAGGGGGGTACCTGACCGCGGCGGTGTGGATGAGCTTCGCCCAGGCGGGAGTCAACCCCTTTATCTGCATCTTCTCCAACAGGGAGCTCCGGCGCTGCTTCAGCACCACTCTCCTTTACTGCAGAAAGTCCAGGTTACCTAGGGAACCCTACTGCGTTATATGAAGGCTTGGGTTGTTTTTTTCCCTTCCACTTCTCCACTGATTGATCTCAATTTGGGTTTGGTCCCATTGTacagctctctttctcttcatcctccagtttctcctcctcctcctccttccctctcttctgaGGCAGAAGTTGGACTGTCAATCACTCCCTTGGTTCTGTGATTGAACATCAAACATGGAGGTTGAAGGGAATGAAATAAGCAGGCAGCTGAGAACCCCTCCTATGTTTATGTTCTAGTAAACAACTGCTGTGGAAGGTTATTTAGAAGCAGAGAAGACGAAGAAAAAGGAATCATTGGTGAAACTACAAAATCAAAGGACTGAGCCCTTGCTTTGGATATTTTGAAGATAATTATTTGAGGTAAAAGATTTTGGTGAAAAAAACCCACAGAAAACTAAGAAACGATTTCCTCTAAAGAGTCACTGGAATTGTTTTACATTTAAAAGTTGCACTAAAAAGAAGATGTAAAGATGCTTTTTTTGATCTACGGTTGCATTGCAAGATGCAAGGACAACTTGTTTCCCCCCCTAACTAAACAATGAATGCTTTACTTTGCAACAGACATCCCATTCGCTGTATGTAAAGCAAAACAATGTTCGGTGACTAACTGTTGGAATACACCTTCACAAGAGGATTAAATTGGTTTTAATTTGTTTGGATTTTCTCATTCACTCCTGAGAAGTCCTTGACTCTATTCACATCAATGTCAAGTGCATGTTCATTTTAAAAAGCTGGTCCACACTCGTAAGCATCACGGGTCATACACTCAGCAGAGCAGCCCATTTTTTATTCTGCAAAGGTTTGCTATGTACACCCCACAGAGTGCTCAAAgcacagggagtgtgtgtgtgtgtgtgcgtgggcacatgtgtgtttgtgtgtgaatctTCAGACAGCTGTCACTTCAAGACCAGAGCCTTATTATGAAATCTTGCACAATTTGTAAAAAAGTGTtgaaggaaaaaaaacatttaaggCACACCGTCTTGTTTATTTATACTTTCCCTACATTTGCTCTCTACTGATTGTTTTCAATAACTTACTTTTTCTCTTGTGGCCATTTTAATATTTATTCTGTATTCTTTTTTGTATATTATAGATAGATTGTGTGTAAGTATGTGAGTCTTTCATTTTGA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563499.2 False 2326 mRNA 0.49 2 49609218 49612631
XM_036944500.1 False 2167 mRNA 0.50 2 49609218 49612631
XM_036944501.1 False 2301 mRNA 0.49 2 49609218 49612631
TU1486066 True 1439 lncRNA 0.42 2 49608361 49610202

Neighbor

gene id symbol gene type direction distance location
LOC110490230 LOC106609249 coding downstream 95800 49496661 ~ 49513418 (-)
LOC110490229 LOC106576106 coding downstream 120540 49486316 ~ 49488678 (-)
LOC110490847 LOC106576105 coding downstream 162436 49444609 ~ 49446782 (-)
LOC110490225 NA coding downstream 233375 49372284 ~ 49375843 (-)
LOC110490224 LOC106609251 coding downstream 237292 49315673 ~ 49371926 (-)
LOC118938922 NA coding upstream 1305 49613936 ~ 49614562 (-)
LOC118938812 LOC106576050 coding upstream 58703 49671334 ~ 49682202 (-)
LOC110490235 LOC106576052 coding upstream 491705 50104336 ~ 50144944 (-)
LOC110490237 LOC106609239 coding upstream 557638 50170269 ~ 50175057 (-)
LOC110490238 NA coding upstream 573728 50186359 ~ 50187380 (-)
G1302570 NA non-coding downstream 2032 49606795 ~ 49607186 (-)
G1302564 NA non-coding downstream 7380 49601633 ~ 49601838 (-)
G1302380 NA non-coding downstream 8311 49600322 ~ 49600907 (-)
G1302362 NA non-coding downstream 21213 49587797 ~ 49588005 (-)
G1302313 NA non-coding downstream 68762 49540248 ~ 49540456 (-)
G1302583 NA non-coding upstream 18104 49630735 ~ 49630979 (-)
G1302585 NA non-coding upstream 18875 49631506 ~ 49631830 (-)
G1302599 NA non-coding upstream 46061 49658692 ~ 49659009 (-)
G1302603 NA non-coding upstream 52348 49664979 ~ 49665198 (-)
G1302612 NA non-coding upstream 81799 49694430 ~ 49694648 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 770067 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 1905180 47584674 ~ 47707520 (-)
tbc1d22a tbc1d22a other downstream 2389603 47217532 ~ 47405004 (-)
tafa5a fam19a5 other downstream 2655794 46822067 ~ 46995100 (-)
G1298541 LOC106575995 other downstream 3311266 46295361 ~ 46297952 (-)
G1302602 NA other upstream 51320 49663951 ~ 49664296 (-)
LOC110490244 LOC106609225 other upstream 686833 50290050 ~ 50301082 (-)
LOC110490264 LOC106576080 other upstream 1586598 51199223 ~ 51205927 (-)
LOC110490744 LOC106576129 other upstream 2174000 51785488 ~ 51793354 (-)
G1304896 LOC107662719 other upstream 2308864 51921495 ~ 51922528 (-)

Expression


Co-expression Network