LOC110490234 (LOC106576051)


Basic Information

Item Value
gene id LOC110490234
gene name LOC106576051
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 49838523 ~ 49863700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563501.2
TACCTTGAGGACACTTTGTTTAGGATACGGTCAAGTGGCAATAGTTTGTTTACACGTCAAAGTTGACTTTTCCGACATGTTCCCATGGTCCTTTAGACACTGCACACAACTGTACTGTAATCAGAATCCGGATATGATGAAAATGTTTTAGACCAAACTTTTATCAAGCGAACCAGCAGAACGTCGAGGACATTAGGAGTAATATTACAACTCGTCCCGCGCGATAATCGGAATAAAGCGAATCATTGGAAACGTATGGATAACTTTGGAGATATTTGAATTTACAACTAGTGCTGCATTTTCAAACGAGAAGGCGTTTCACTATGGAGGAGGGATGGGAATGAGTCAAACTTGAGGCAGGGAGTTGTCATGTTTCTAAGGGTTAAGGGCTAAGGAGGAAAAGGAGAATCTTCGTTATCTGTCATGTCCACGGATACCGTCTTACCTCCGGAAGGGCCTGCTGGGCCAGGGGAGAACCTTCAACAGGAGACAAGTCCTCTTCTCCCAAACTCTCACGATGCTTGTGACCGAAACGAATCATCTGAAACTACAAATCCATCCGGAACATCGTGTCCCAGAGGCACGTCCACCGAAGTACAGAGTCACGTGACGGGGGGAAACGCGGCCTATTGTGACCCCGTTCGAACTCAACCTCAGCCTCTGCCCCAGCCAACCACCTCTGCGCAGGGAGAGCCCGACAAGGGAGGAGAAGATACTGCTTCTGCCAGCAGTCAAAATGACCACCAATCCTCCACCGGCCTGAGTAACGGCAATGGAATTCGCCGGCAATGTACCTGTGGGGTGGAGCAGCACCCATCGCCCGGCGTCTCCCAGAAGATGCAGAGCCAGCTTCGTTCCAGCCTGTCGGTCAACAGCGACAGCAGCAGACAGAGTAAGGGAAGCTCCACCGGATCCCACAAGCCTGGGACATTACCGGAGGACTGCTGTGTCCACTGCATCCTGGCCTGTCTGTTCTGTGAGTTCCTGACCCTGTGCAACATGGTGGTGGCCCAGGCTAGCTGTGGCACCTGCACGTCGGaggtctgctgctgctgctgcgctGAGAACATGGGAGACGACTGCAACTGCCCCTGCGACGACATGGACTGTGGCATCATGGACGCCTGCTGCGAGTCCTCCGACTGCctggagatctgcatggagtgCTGCGGCATCTGCTTCCCCACATAGGAAGGGCCATAATGGGATTGGGAATGATGGCCGTATTGCTACTGTAACCTGTACTTTACACtccagcagagggagggagaggggggaaagtgTGTGTGGGTTAATGGGGGGGGGTGCCTTCGATATAAGCCTACACAGAGAGATCTGTTAATCTACACTGGGCCTCTCTGCCAACATGGCCAAGCAGGGGGCCAGAAATAGTTTAGAAATGCTTTTGTTACATACCACAAGTATAAACATGTTGTTTTAATGAACCAACGTGTGTTCACTGTTCAGAAATATGTTAATCAGCTCTTTAAACAGTATTACTTTAGATGCCTTATTGGATAGGAAGATCTCTATCGTTTCAGGAATCCTATCCGACTGACATGTTTGCCTTTTAAAAGTGTCCTTCTTTTTCTCGACCAAACTGTCAATTCCTGACGCAAAATCAAAAGGAATACATATTTTACTTTGATATTTAGCAGCCTTTTAGTGTGTttagtagaggttgaccgatttatgatttttcaatactgataccgatttattggaggaccaaaaaaagccgataccgataaataaaaattggccgatttaatttgtaataatgacaattacaacaata

Function

NR:

description
myoD family inhibitor domain-containing protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563501.2 True 1798 mRNA 0.48 5 49838523 49863700

Neighbor

gene id symbol gene type direction distance location
foxp2 LOC106609245 coding upstream 43561 49680531 ~ 49794962 (+)
LOC110490228 NA coding upstream 428325 49398275 ~ 49410313 (+)
LOC110490226 ifrd1 coding upstream 444199 49383233 ~ 49394324 (+)
LOC110490220 LOC106576044 coding upstream 597473 49110297 ~ 49241050 (+)
LOC110490219 LOC100286412 coding upstream 731841 49065642 ~ 49106682 (+)
LOC118938923 NA coding downstream 155917 50019617 ~ 50023828 (+)
LOC110490236 LOC106609240 coding downstream 298244 50161944 ~ 50170265 (+)
LOC110490239 NA coding downstream 319120 50182820 ~ 50187125 (+)
cdkn1d LOC106576064 coding downstream 457649 50321349 ~ 50333454 (+)
LOC110490251 LOC106609232 coding downstream 491135 50354835 ~ 50357815 (+)
G1302425 NA non-coding upstream 63778 49774464 ~ 49774745 (+)
G1302480 NA non-coding upstream 66267 49771927 ~ 49772256 (+)
G1302467 NA non-coding upstream 86176 49752132 ~ 49752347 (+)
G1302460 NA non-coding upstream 91850 49746456 ~ 49746673 (+)
G1302457 NA non-coding upstream 97067 49741140 ~ 49741456 (+)
G1302733 NA non-coding downstream 52240 49915940 ~ 49916199 (+)
G1302750 NA non-coding downstream 74288 49937988 ~ 49938215 (+)
G1302773 NA non-coding downstream 94688 49958388 ~ 49958599 (+)
G1302863 NA non-coding downstream 225398 50089098 ~ 50089666 (+)
G1302865 NA non-coding downstream 229498 50093198 ~ 50093432 (+)
G1301706 NA other upstream 442665 49395223 ~ 49396921 (+)
G1301458 NA other upstream 907935 48930046 ~ 48930588 (+)
G1301200 NA other upstream 1253260 48584707 ~ 48585263 (+)
kiss2 kiss2 other upstream 1478084 48359799 ~ 48360553 (+)
G1303015 NA other downstream 314574 50178274 ~ 50178565 (+)
G1303095 LOC106609233 other downstream 437745 50301445 ~ 50302351 (+)
LOC110490250 LOC106609227 other downstream 495510 50358439 ~ 50372219 (+)
G1303641 NA other downstream 883662 50747362 ~ 50747715 (+)
G1303804 NA other downstream 1208125 51071825 ~ 51073294 (+)

Expression


Co-expression Network