LOC118938923


Basic Information

Item Value
gene id LOC118938923
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50019617 ~ 50023828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036316.1
TTGagacatacctgctggagcgcgtgctacgggtggatgttattatgaccagtgagctgagataaggcagagctttacctagcaaaggctTATAGGTGACCTGGCGACGAATAtgcagcgagggccagccgattagagcatacaggtcgcagtggtgggtggtatatggggctttggtgacaaaacggatggcactgtgatagactgcatccagtttgctgagtagagtgttggaggctattttgtaaatgtaatcgccgaagtcgaggatcagtaggataatcagttttactagggtattgGTGTGCAACGACCAGACCTCTCTGGTATAACTTAGCCAACGACTTTAGATAACGCTATTGCTGTTTATGTAGGCAGCTCTTTTGAGGCAGGCTGGCTAATGTTTTAGTTAACGTTAGCATagataattagctagctagcgcaTTACAACTTAGTTAGGTCGTAGCTTATACACGTTTATTGTGTATTGTCTACATACTGTTGGTTATGTGACGTTATTTGTTAATGCTAGCCGAGGcaggctggctagctaacattagctaactacAAGTTGGATTTGCAAATTCATTTGTAGCTCATACAAGTGTATTCTGTATTGTCATGGATGCCGCTATGGGGGTAGCTAATGTAACAGATGTGATCGTTCTTAGTAACTGTCTTGCATTGTGTTTATAAAGAAAGGAATACCCAGCCAAAGGTCCCAGTTGATTAGTGTTTATTCTGACAATAGACATTAAGGAAGCACATTAGATGTGCAGGACAACAGTTTGTTGATGGCTGTAGATTCATGATTCGTCTGTTACCATGGAAATAACTGTGAATTAGCAGGGAGCTAATGCAACCATTACAATTAGAGCATGCTAGCTAGCTGAGTgttcaaatctgtcatcaaggcaaaggttggctactttgaagaatctcaaatataaaatatattttgatttgtttaacacctttttgattactacatggttccatatatgttatttctcCCCCTATCTGCAAGCATGACTACTGGCATAACAATTTATTGACATGTAAATTCAAACAACCAATAGGAATGGGgtggcagtgtagcctagtgtgttggactagcaaccagaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccccgaacaggccgtcattgaaaataagaatttgttcttatctgacttgcctagttaaatgaaataaaaaatacataaacacTGAATACATGTTTCTGCAGTGTCAATGGAAACATAACTAACCCTGTTACATTAACAAATGTTAGAGTCTGACTAATTCTGTGAACTAGGGGCAACAAACCGTAACTGCATCACTGGCCTGAATTGTATCAAATCTGGAGCTATAGTCGTAAAACAGAATTAGGGTttacactagttaccacagccacagagTCCCCGACCTGATTCTAAAGTCAAACTTGGTAAaatattcatgaaaacaaaaatgtgctttttggtcttaatttaagtttagggttagcaGTGGGTTAGGGTGAAGATtaagtttaaaatcacattttaagaagaaaaCTTGTAGAAATTTGTGGGGTAAATTACTTTCttgctgtggtaactagtgacaacttAGAATTATCTTGACCCAAGCTACTTTCCTGATGAAACAGACTGCTTCATCTACAACGGTAATGTGTGTTATGTGAAAAGTTGTATAAAGTTTGATAAACTAATAGGTTCATGATGTGATATCATGATAGctgaagtgaaatggaatgcagcgttcaggttggttccaccatgctaatcataaccaccattgataatgtaatcagtgctctgtgggtgtgtttgtgtgtgtggtgaccaGTACCTTTGAGGGGCCAGGAGCTGATATACGCTGCCATGCCCATCAATGGGACGATAGCAAAGACCTTACCTCCAGCCTCACCTCTTGCCTGCTCACCAAAGGATGTCGATGGGGAGACCAGAATCAGATGCAGCTATGGAGCCAGCACTTGGAGACTTGCTAGACGATGTGATAGAGGCCTGACCGACAGACAGGCTTGACACTGacgtctctgaatggagagagacctggcactcagCACATCCACAATGTGGGACTGAAGATGAGGAGGACTGGGGATGCTTCTGCCAGACGCCAGCCTCGGTCGTTTGATGGGGAGACTATAATTGGGCAGGTTTGGTCTTACCTGTTCAGAGTTCAACATTAGTACCCGTTTGTGTGTCAGATTACATATCGTAACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036316.1 True 2283 mRNA 0.42 3 50019617 50023828

Neighbor

gene id symbol gene type direction distance location
LOC110490234 LOC106576051 coding upstream 155917 49838523 ~ 49863700 (+)
foxp2 LOC106609245 coding upstream 224655 49680531 ~ 49794962 (+)
LOC110490228 NA coding upstream 609419 49398275 ~ 49410313 (+)
LOC110490226 ifrd1 coding upstream 625293 49383233 ~ 49394324 (+)
LOC110490220 LOC106576044 coding upstream 778567 49110297 ~ 49241050 (+)
LOC110490236 LOC106609240 coding downstream 138116 50161944 ~ 50170265 (+)
LOC110490239 NA coding downstream 158992 50182820 ~ 50187125 (+)
cdkn1d LOC106576064 coding downstream 297521 50321349 ~ 50333454 (+)
LOC110490251 LOC106609232 coding downstream 331007 50354835 ~ 50357815 (+)
LOC110490250 LOC106609227 coding downstream 334611 50358439 ~ 50372219 (+)
G1302773 NA non-coding upstream 61018 49958388 ~ 49958599 (+)
G1302750 NA non-coding upstream 81402 49937988 ~ 49938215 (+)
G1302733 NA non-coding upstream 103418 49915940 ~ 49916199 (+)
G1302425 NA non-coding upstream 244872 49774464 ~ 49774745 (+)
G1302480 NA non-coding upstream 247361 49771927 ~ 49772256 (+)
G1302863 NA non-coding downstream 65270 50089098 ~ 50089666 (+)
G1302865 NA non-coding downstream 69370 50093198 ~ 50093432 (+)
G1302869 LOC106576052 non-coding downstream 80541 50104369 ~ 50115191 (+)
G1302885 NA non-coding downstream 106810 50130638 ~ 50130962 (+)
G1302887 NA non-coding downstream 108172 50132000 ~ 50132218 (+)
G1301706 NA other upstream 623759 49395223 ~ 49396921 (+)
G1301458 NA other upstream 1089029 48930046 ~ 48930588 (+)
G1301200 NA other upstream 1434354 48584707 ~ 48585263 (+)
kiss2 kiss2 other upstream 1659178 48359799 ~ 48360553 (+)
G1303015 NA other downstream 154446 50178274 ~ 50178565 (+)
G1303095 LOC106609233 other downstream 277617 50301445 ~ 50302351 (+)
G1303641 NA other downstream 723534 50747362 ~ 50747715 (+)
G1303804 NA other downstream 1047997 51071825 ~ 51073294 (+)

Expression


Co-expression Network