LOC110490236 (LOC106609240)


Basic Information

Item Value
gene id LOC110490236
gene name LOC106609240
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50161944 ~ 50170265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563504.2
CCAGGCGTAAGCAATCGATCACCAATATGGGCTGGCTGCTGTACCATTCGTAGTCTCTGCACTTTGCGCTGCACTTGAGGTTGGACTAGAAAACCGTCTGCAATTGCAACAAAGTATCTAAAGGTATATTTTGCAACAAAGAGGACGATGGCAACATCCGTGAAATTGAACACCGGTGCAGACATGCCGATTCTTGGTCTCGGGACGTGGAAGTCCCCTCCAGGTAAAGTAACTGATGCGGTGAAGGCGGCCATAGCTGCAGGCTATAGGCACATCGATGGGGCCTTCATCTACCAGAACGAGACCGAGGTGGGAGAGGGCGTTCATGCCATGGTCAAGGAGGgggtggtgaagagagaggaaCTGTTCGTGGTCAGCAAGCTGTGGTGCACATTCCATGGGAAGTCTATGGTGAAAGAAGGCTGTCAGAAGACTCTCAGTGATCTGAAACTGGACTACCTGGATCTTTATCTGATACACTGGCCCATGGGCTTCCAGCCGGGAGAGGACCTCTTCCCTACGGACAGCAATGGAAATAATATTGACGATGGCTCCAAATTCCTGGAGACATGGGAGGCTATGGAGGAGCTGGTGGATGCTGGACTGGTCAAGGCTATCGGTGTCTCCAACTTTAACAAAGACCAGATTGAATCCATCCTGAACAAGCCAGGCCTCAAGTATAAACCTGCCAACAACCAGATTGAATGCCACCCCTATCTGAACCAGGAGAAGTTGATCAGCTACTGTCACTCTAAGGGCATCTCTGTGACAGCCTACAGCCCCCTGGGTTCCCCAGACAGACCATGGGCCAAACCAGAggacccttccctactggaggaTCCCAACATCAAGGCCATCGCTGAGAAGCACAAGAAGACCTCTGCCCAGGTCCTGATCCGCTTCCATATCCAACGGAACACGATTGTGATTCCCAAGTCTATCACCCCCACACGTATCCAGGAGAATTTCCAGGTGTTTGACTTTGTGTTGAGCGACGAGGAAATGAAGACCATTCTGGGCTTCAACAGGAACTGGAGAGTCTGCCCAATGACAGGGAGCATGAAGCACAAGGACTACCCCTTCAATGATGAATTTTAAGGAAACGGTGGATTCACAAAGTTCCATCTCTGGTGCTGTGACTCGCTTGAGATGTCTGCCCTCATTCTGTTCTCGTTTAGATTCATTCTTATTTCTCCCTTTAAGACAATGTGCAGAAATAGCCATCCTTGAGCTAGTTTCTTGCGAATACCCATACACACTGTGATTTAGTATCtgtgtgttgcagtattgtattTCTCACGAGATATACACTCTGACCTATAGAATTGCCTTCTTTCATAGCACAATGGTTTTTCAACAATCATGGAAACATAATTTGACATAGGATCGATATTAgtgaggtataaaaaaaaaagcttttggtTTCTGGTTTGATACTGTAGCAAATCCAAGGCGCCAGGCTTCCTAACGCGCACAATATGGTGTTTGTGGCTTCTCACATGACCCAGTTTGTTTGTTTCTCTTTGGTCACTCGCAAGCTTTTTCATCAATTAGCATCTACATTTACAGGCCATATATAATCTTATGACTTTAAAGAATTGATGTTAACCATTGGAATGCATAGTTCAACCATAGGAGCTATGTCATACCTGGTCTTACTGAAGTAAGTTACAGAAATATCACatggacattgtgtgtgtgtgacgtacaGTATTACATATCAACTGTGAGCTGTTCCCTCTGTTTTCTTTTGGTTTcagagatttaaaaaaatgtagaataTAAATAGTATCGAAATAGCTTATCCTAATAGTACATTGACCTATGTTCATGAAGATATGTTGTTGAACACTCCTTCCCTCCAATGCCTAGTCATAGGAGCCTAGAATGAGTCATCCACACTCTTTGCCTTACAGGACGATAAAGCACTTCTACTCAT

Function

NR:

description
aldose reductase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00011 AKR1B; aldehyde reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563504.2 True 1939 mRNA 0.45 10 50161944 50170265

Neighbor

gene id symbol gene type direction distance location
LOC118938923 NA coding upstream 138116 50019617 ~ 50023828 (+)
LOC110490234 LOC106576051 coding upstream 298244 49838523 ~ 49863700 (+)
foxp2 LOC106609245 coding upstream 366982 49680531 ~ 49794962 (+)
LOC110490228 NA coding upstream 751746 49398275 ~ 49410313 (+)
LOC110490226 ifrd1 coding upstream 767620 49383233 ~ 49394324 (+)
LOC110490239 NA coding downstream 12555 50182820 ~ 50187125 (+)
cdkn1d LOC106576064 coding downstream 151084 50321349 ~ 50333454 (+)
LOC110490251 LOC106609232 coding downstream 184570 50354835 ~ 50357815 (+)
LOC110490250 LOC106609227 coding downstream 188174 50358439 ~ 50372219 (+)
LOC110490256 LOC106576072 coding downstream 390750 50561015 ~ 50577585 (+)
G1302999 NA non-coding upstream 1815 50159846 ~ 50160129 (+)
G1302888 NA non-coding upstream 28585 50133082 ~ 50133359 (+)
G1302887 NA non-coding upstream 29726 50132000 ~ 50132218 (+)
G1302885 NA non-coding upstream 30982 50130638 ~ 50130962 (+)
G1302869 LOC106576052 non-coding upstream 46753 50104369 ~ 50115191 (+)
G1303014 NA non-coding downstream 5966 50176231 ~ 50176432 (+)
G1303019 NA non-coding downstream 26579 50196844 ~ 50197151 (+)
G1303040 NA non-coding downstream 52918 50223183 ~ 50230624 (+)
G1303020 NA non-coding downstream 62163 50232428 ~ 50239074 (+)
G1301706 NA other upstream 766086 49395223 ~ 49396921 (+)
G1301458 NA other upstream 1231356 48930046 ~ 48930588 (+)
G1301200 NA other upstream 1576681 48584707 ~ 48585263 (+)
kiss2 kiss2 other upstream 1801505 48359799 ~ 48360553 (+)
G1303015 NA other downstream 8009 50178274 ~ 50178565 (+)
G1303095 LOC106609233 other downstream 131180 50301445 ~ 50302351 (+)
G1303641 NA other downstream 577097 50747362 ~ 50747715 (+)
G1303804 NA other downstream 901560 51071825 ~ 51073294 (+)

Expression


Co-expression Network