LOC110490239


Basic Information

Item Value
gene id LOC110490239
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50182820 ~ 50187125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563509.2
GGGTTTGATCACATAGCGCCCCGCGTAGATGACAGAAACCTTGCAGACAGGAGTCGTGGCCAATGAAAATGCTTTTTGAAGGCGACATGACATGCGCATTATACACTGTTGATGACTTCGCTAGCTGTTTCGACCGAGCTTTGAAACAGGATCGCTAAAATATATTAAACAGTCTCCTTCGTTAGACACGACCATGCTACAGTTTTTGGCTGGGTTTACCTTGGGAAACGTTGTTGGGATGTACCTCGCTCAAAACTACGAGGTCCCCAACATTTCCAAAAAGATAGAAGCCTTCAAAAAGGATGTGGAGGCAAAGAAGAAACCTCCAGCAGAGTGAAGAAGAGATTGCTCAACAACATGGAAAGAAAGAACTGGACAGATTTGAAGAGGTGGGGGACTATTGGAACAACAAGATGCACACTGCAGAGGATATATACCAAATGTTAATctcatttaatatttttttatcaaaagCAGTATGTATACTAAGGTTACACTGGCAGAGGAATAAATGGTAAAAATGTATTCTCTAAGCAGGGTTTTCACAGTGCCTGGACTGGGCCAGTGttctttttgttgttttgttttcttaAAGTAATTGGCTACTTGTCAAGATAATGTTATGATGGTGCTATTTATGAGTGTATATGCAAAGATGACTAACTGCTGTGGGACAACATCTACACTTCAGAAACCTTGGCCTTATCCTTGCAAGAAGCTGGGCAGGGCAGGCCTTAGCGTTCATGTCTAAACATGGCATTTTTACCACATGCGCTTGTCATTTTTGACAACTAAACAGAGTGCAGTTACTGCTTTTGAGTGATGTTATCATATAAATAGAATTGAATTGCGAGGCCTGTTCTATGGATTGTATTTCTGTGGGTGTTATGGTATTGAGAATGAGTAGCTCATGTAAATGGCATTGTTTGCAATTCTAATCTAAATGCTGGTCTCTAACATTGTAGGCCTCACTCAGATGTTAATACATTTGCTGAATTTGGTTCTGTCATAAATTGAAAATAGGTGTTACATCACATAAGATACTGTTGTCTAGCAAGGGACCGATCTCAATACTTCCTCACCATCCAGTAAAATAGATTATTTTGTAGGGCAGTTATTCTAGCTCGCCATGTTTTATTCTTAACATCCATTATCCAGAGAAGCATTCTTTTCACGCGTCACAGAAATCTTTCCTGGGAGCATCTGGGTATGGTGTGCCAGTAGGCCAGCAGAGGTCAATGTATTCCCATGTTTTCTTTCCACTGTTCTCTGTAAATGAAAACCAATCCACCA
>TU1486524
TACACTGTTGATGACTTCGCTAGCTGTTTCGACCGAGCTTTGAAACAGGATCGCTAAAATATATTAAACAGTCTCCTTCGTTAGACACGACCATGCTACAGTTTTTGGCTGGGTTTACCTTGGGAAACGTTGTTGGGATGTACCTCGCTCAAAACTACGAGGTCCCCAACATTTCCAAAAAGATAGAAGCCTTCAAAAAGGATGTGGAGGCAAAGAAGAAACCTCCAGCAGAGTGAAGAAGAGATTGCTCAACAACATGGAAAGAAAGAACTGGACAGATTTGAAGAGGTGGGGGACTATTGGAACAACAAGATGCACACTGCAGAGGATATATACCAAATGTTAATctcatttaatatttttttatcaaaagCAGTATGTATACTAAGGTTACACTGGCAGAGGAATAAATGGTAAAAATGTATTCTCTAAGCAGGGTTTTCACAGTGCCTGGACTGGGCCAGTGttctttttgttgttttgttttcttaAAGTAATTGGCTACTTGTCAAGATAATGTTATGATGGTGCTATTTATGAGTGTATATGCAAAGATGACTAACTGCTGTGGGACAACATCTACACTTCAGAAACCTTGGCCTTATCCTTGCAAGAAGCTGGGCAGGGCAGGCCTTAGCGTTCATGTCTAAACATGGCATTTTTACCACATGCGCTTGTCATTTTTGACAACTAAACAGAGTGCAGTTACTGCTTTTGAGTGATGTTATCATATAAATAGAATTGAATTGCGAGGCCTGTTCTATGGATTGTATTTCTGTGGGTGTTATGGTATTGAGAATGAGTAGCTCATGTAAATGGCATTGTTTGCAATTCTAATCTAAATGCTGGTCTCTAACATTGTAGGCCTCACTCAGATGTTAATACATTTGCTGAATTTGGTTCTGTCATAAATTGAAAATAGGTGTTACATCACATAAGATACTGTTGTCTAGCAAGGGACCGATCTCAATACTTCCTCACCATCCAGTAAAATAGATTATTTTGTAGGGCAGTTATTCTAGCTCGCCATGTTTTATTCTTAACATCCATTATCCAGAGAAGCATTCTTTTCACGCGTCACAGAAATCTTTCCTGGGAGCATCTGGGTATGGTGTGCCAGTAGGCCAGCAGAGGTCAATGTATTCCCATGTTTTCTTTCCACTGTTCTCTGTAAATGAAAACCAATCCACCAGAGGTAACCAGAGTTCTATTTTGAATTTGAACAGACTAGATCAACTAAAATATACATTTATAATTAGGGATTTATTCAATCTGTaaagctgaagcgttacagattctgccatagaaatgtaaaggtcatttccgatttAGCCAACATAAGCAGCGTTTAGCATGAATGCAGTCTGATAAATGGGGAATAGTGGCGTTCGCTTAGGGCTGGAATGAAGCGGAATGGTTGGAAGGGAGTTAATGCAATGGTATCAAACGTGAAACTAGtccattccggccattattatgagccgtcctcccctcaacagcctccactgatcGGGAACATCGCCTTAACATTTATATCACGCTGAAAAGCTGGATTTCCACCATGCCGATTGAATAGAGCCGTACTAAACTGACAATGTTTGCTTTGGTCTTGGCAAGGTTTGTGGTAGAGTCACTTTTTGTTTTTTGGTTTCTTGCCCTTCATTCCTCCTGTTTTCTTTTTAGTTGACTTAGGCCATCCAAAGCCTCGGAACGCCAGACAGTCaactgcattgtgggaaatgtagtaaaCATTCTGCATGGCTGCTGGACTGAGAATGTCCACTTCTGACTTGGTGGCTTTGGCACTGACTGATCTCTTCTTGGATGACCTCCTCCTCTCGGCCTTTTTGACAGGCCTTTTTGAccttgattttctggattttgttgatTGTGTAGGCTGCGGACAAACCATTTGATAATCACTATAGATAACATGGGAAAGTTCATGTTAAGCAGTATGTTTAGTAATGTAGGCTACTTGCTCTACACTGCACCCTAGACCAGTGATCAATGTATGCAACTACTGCATCAATGCTTCAAAAACTACATCCAATTTACTGTACCATTGTGTGGACATTCCTCTCCTATTTGATCTGTGAGATCATCTGTTCATTCTCTGCAAATGTGTCAAAGAAACCTGGAAATATCAGGGACATCACACGAATAGGTTACTTTTCAAGTAAAGAATGCAC

Function

NR:

description
PREDICTED: uncharacterized protein C7orf73-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563509.2 False 1293 mRNA 0.40 3 50182820 50186125
TU1486524 True 2192 lncRNA 0.40 3 50182921 50187125

Neighbor

gene id symbol gene type direction distance location
LOC110490236 LOC106609240 coding upstream 12555 50161944 ~ 50170265 (+)
LOC118938923 NA coding upstream 158992 50019617 ~ 50023828 (+)
LOC110490234 LOC106576051 coding upstream 319120 49838523 ~ 49863700 (+)
foxp2 LOC106609245 coding upstream 387858 49680531 ~ 49794962 (+)
LOC110490228 NA coding upstream 772622 49398275 ~ 49410313 (+)
cdkn1d LOC106576064 coding downstream 135224 50321349 ~ 50333454 (+)
LOC110490251 LOC106609232 coding downstream 168710 50354835 ~ 50357815 (+)
LOC110490250 LOC106609227 coding downstream 172314 50358439 ~ 50372219 (+)
LOC110490256 LOC106576072 coding downstream 374890 50561015 ~ 50577585 (+)
LOC110490263 LOC106576079 coding downstream 989923 51176048 ~ 51199225 (+)
G1303014 NA non-coding upstream 6388 50176231 ~ 50176432 (+)
G1302999 NA non-coding upstream 22691 50159846 ~ 50160129 (+)
G1302888 NA non-coding upstream 49461 50133082 ~ 50133359 (+)
G1302887 NA non-coding upstream 50602 50132000 ~ 50132218 (+)
G1302885 NA non-coding upstream 51858 50130638 ~ 50130962 (+)
G1303019 NA non-coding downstream 10719 50196844 ~ 50197151 (+)
G1303040 NA non-coding downstream 37058 50223183 ~ 50230624 (+)
G1303020 NA non-coding downstream 46303 50232428 ~ 50239074 (+)
G1303024 NA non-coding downstream 97875 50284000 ~ 50284179 (+)
G1303097 NA non-coding downstream 119522 50305647 ~ 50306222 (+)
G1303015 NA other upstream 4255 50178274 ~ 50178565 (+)
G1301706 NA other upstream 786962 49395223 ~ 49396921 (+)
G1301458 NA other upstream 1252232 48930046 ~ 48930588 (+)
G1301200 NA other upstream 1597557 48584707 ~ 48585263 (+)
G1303095 LOC106609233 other downstream 115320 50301445 ~ 50302351 (+)
G1303641 NA other downstream 561237 50747362 ~ 50747715 (+)
G1303804 NA other downstream 885700 51071825 ~ 51073294 (+)
G1303950 LOC106576084 other downstream 1113278 51299403 ~ 51299761 (+)

Expression


Co-expression Network