LOC110490254 (LOC106576067)


Basic Information

Item Value
gene id LOC110490254
gene name LOC106576067
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50378042 ~ 50391018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944548.1
CAATCAGAGATAAGAGGTGGTGACATTGGTGGCAGGGCTGTATTATGGGAGCCTTAAGAGTCTCATTGAACTTGTCTGTTTCTGGATCTCAACGAATAAGACCGGCCCAGCACTACTTTACCATCTCTCTTCCCTGTGGGGTTTGGAGGTAATCCAATCTAAACATGGCAGATGAAGAAAATGAGGAGGAAGTCGAGGTTGAAGTCCCAGCAGAGGAAGaaccagagccagagccagaagtAGAAGAGCCCACTGCAGTAGAAGAAACGCCTGCAGGAGAAGCTGGTGGAGAGACTCAAGATTCCAAAGCCAAACCAAAAAGTTTTATGCCAAATGTTGCCCCTCCAAAGCTACCAGAGGGAGATGGTAAAGTCGATTTTGACGACCTGCATAGGAAGCGTCAAGAGAAGGACATGGCTGAGCTGACCTCTCTGATTGAGTCTCACTTTGTCCAGAGGAAGAAAGATGAAGATGAGCTCATCAGTCTCGTCAACAGGATTgAGAAGCGTCGTACCGAGAGGGCAGAGCAGCAGAGGATTCGTGctgagcaagagaaagagagacaggcccGTCTAGCCgaagagaaagagaagagggagcaAGATGAACAGCGTAGGAAGCACGATGATGACGCTAAGAAGAAGAAGGCCCTCACTACCATGACTCACACGTACGGTGGCATCCAACAGAAGCAAGAGGGCAAGAAAGGAGCCAAGAAGCAGacggagagagaaaagaagaagaagattCTGGCTGACAGAAGGAAGGCTCTGATCATTGACCATCTCAACGAGGACAAACTCAAGGAGAAGGCCAATGAGCTGTGGCAGTGGATGATGGAGTTGGAGGCGGAGAAGTTTGACCTCGGCGAGAAACTGAAGAAGCAGAAATACGACATGAATGTTCTCCAGACCCGAATCAATGAGCAGCAGAAGTTTGCCAAGGGCAGAGGCAAGGCCAAGGCGGTCAGGAGGTAATGAGACCTGGCAGGATGAAGTCTCCAGGACTGAGACGCCAGATGATGATGGAAGATTGTTTTGTTGTTCTTCTTGTTATCAGTGCACATGCAAATTGCTATGGAAATGTGCTGTTGTCACGGTCACTGTTTGCTGTGCATGAGGCTAGAAACAATAAAAAGATGTTTGCTTTTGA
>XM_036944550.1
CAGAGATAAGAGGTGGTGACATTGGTGGCAGGGCTGTATTATGGGAGCCTTAAGAGTCTCATTGAACTTGTCTGTTTCTGGATCTCAACGAATAAGACCGGCCCAGCACTACTTTACCATCTCTCTTCCCTGTGGGGTTTGGAGGTAATCCAATCTAAACATGGCAGATGAAGAAAATGAGGAGGAAGTCGAGGTTGAAGTCCCAGCAGAGGAAGaaccagagccagagccagaagtAGAAGAGCCCACTGCAGTAGAAGCTGGTGGAGAGACTCAAGATTCCAAAGCCAAACCAAAAAGTTTTATGCCAAATGTTGCCCCTCCAAAGCTACCAGAGGGAGATGGTAAAGTCGATTTTGACGACCTGCATAGGAAGCGTCAAGAGAAGGACATGGCTGAGCTGACCTCTCTGATTGAGTCTCACTTTGTCCAGAGGAAGAAAGATGAAGATGAGCTCATCAGTCTCGTCAACAGGATTgAGAAGCGTCGTACCGAGAGGGCAGAGCAGCAGAGGATTCGTGctgagcaagagaaagagagacaggcccGTCTAGCCgaagagaaagagaagagggagcaAGATGAACAGCGTAGGAAGCACGATGATGACGCTAAGAAGAAGAAGGCCCTCACTACCATGACTCACACGTACGGTGGCATCCAACAGAAGCAAGAGGGCAAGAAAGGAGCCAAGAAGCAGacggagagagaaaagaagaagaagattCTGGCTGACAGAAGGAAGGCTCTGATCATTGACCATCTCAACGAGGACAAACTCAAGGAGAAGGCCAATGAGCTGTGGCAGTGGATGATGGAGTTGGAGGCGGAGAAGTTTGACCTCGGCGAGAAACTGAAGAAGCAGAAATACGACATCAATCAGCTTCTGGCCCGTGTCCAGGACCACCAGAGTGCCAAGGGCAGAGGCAAGGCCAAGGCGGTCAGGAGGTAATGAGACCTGGCAGGATGAAGTCTCCAGGACTGAGACGCCAGATGATGATGGAAGATTGTTTTGTTGTTCTTCTTGTTATCAGTGCACATGCAAATTGCTATGGAAATGTGCTGTTGTCACGGTCACTGTTTGCTGTGCATGAGGCTAGAAACAATAAAAAGAT
>XM_021563532.2
ATCAGAGATAAGAGGTGGTGACATTGGTGGCAGGGCTGTATTATGGGAGCCTTAAGAGTCTCATTGAACTTGTCTGTTTCTGGATCTCAACGAATAAGACCGGCCCAGCACTACTTTACCATCTCTCTTCCCTGTGGGGTTTGGAGGTAATCCAATCTAAACATGGCAGATGAAGAAAATGAGGAGGAAGTCGAGGTTGAAGTCCCAGCAGAGGAAGaaccagagccagagccagaagtAGAAGCTGGTGGAGAGACTCAAGATTCCAAAGCCAAACCAAAAAGTTTTATGCCAAATGTTGCCCCTCCAAAGCTACCAGAGGGAGATGGTAAAGTCGATTTTGACGACCTGCATAGGAAGCGTCAAGAGAAGGACATGGCTGAGCTGACCTCTCTGATTGAGTCTCACTTTGTCCAGAGGAAGAAAGATGAAGATGAGCTCATCAGTCTCGTCAACAGGATTgAGAAGCGTCGTACCGAGAGGGCAGAGCAGCAGAGGATTCGTGctgagcaagagaaagagagacaggcccGTCTAGCCgaagagaaagagaagagggagcaAGATGAACAGCGTAGGAAGCACGATGATGACGCTAAGAAGAAGAAGGCCCTCACTACCATGACTCACACGTACGGTGGCATCCAACAGAAGCAAGAGGGCAAGAAAGGAGCCAAGAAGCAGacggagagagaaaagaagaagaagattCTGGCTGACAGAAGGAAGGCTCTGATCATTGACCATCTCAACGAGGACAAACTCAAGGAGAAGGCCAATGAGCTGTGGCAGTGGATGATGGAGTTGGAGGCGGAGAAGTTTGACCTCGGCGAGAAACTGAAGAAGCAGAAATACGACATGAATGTTCTCCAGACCCGAATCAATGAGCAGCAGAAGTTTGCCAAGGGCAGAGGCAAGGCCAAGGCGGTCAGGAGGTAATGAGACCTGGCAGGATGAAGTCTCCAGGACTGAGACGCCAGATGATGATGGAAGATTGTTTTGTTGTTCTTCTTGTTATCAGTGCACATGCAAATTGCTATGGAAATGTGCTGTTGTCACGGTCACTGTTTGCTGTGCATGAGGCTAGAAACAATAAAAAGAT
>XM_036944549.1
ATCAGAGATAAGAGGTGGTGACATTGGTGGCAGGGCTGTATTATGGGAGCCTTAAGAGTCTCATTGAACTTGTCTGTTTCTGGATCTCAACGAATAAGACCGGCCCAGCACTACTTTACCATCTCTCTTCCCTGTGGGGTTTGGAGGTAATCCAATCTAAACATGGCAGATGAAGAAAATGAGGAGGAAGTCGAGGTTGAAGTCCCAGCAGAGGAAGaaccagagccagagccagaagtAGAAGAGCCCACTGCAGTAGAAGAAACGCCTGCAGGAGAAGCTGGTGGAGAGACTCAAGATTCCAAAGCCAAACCAAAAAGTTTTATGCCAAATGTTGCCCCTCCAAAGCTACCAGAGGGAGATGGTAAAGTCGATTTTGACGACCTGCATAGGAAGCGTCAAGAGAAGGACATGGCTGAGCTGACCTCTCTGATTGAGTCTCACTTTGTCCAGAGGAAGAAAGATGAAGATGAGCTCATCAGTCTCGTCAACAGGATTgAGAAGCGTCGTACCGAGAGGGCAGAGCAGCAGAGGATTCGTGctgagcaagagaaagagagacaggcccGTCTAGCCgaagagaaagagaagagggagcaAGATGAACAGCGTAGGAAGCACGATGATGACGCTAAGAAGAAGAAGGCCCTCACTACCATGACTCACACGTACGGTGGCATCCAACAGAAGCAAGAGGGCAAGAAAGGAGCCAAGAAGCAGacggagagagaaaagaagaagaagattCTGGCTGACAGAAGGAAGGCTCTGATCATTGACCATCTCAACGAGGACAAACTCAAGGAGAAGGCCAATGAGCTGTGGCAGTGGATGATGGAGTTGGAGGCGGAGAAGTTTGACCTCGGCGAGAAACTGAAGAAGCAGAAATACGACATCAATCAGCTTCTGGCCCGTGTCCAGGACCACCAGAGTGCCAAGGGCAGAGGCAAGGCCAAGGCGGTCAGGAGGTAATGAGACCTGGCAGGATGAAGTCTCCAGGACTGAGACGCCAGATGATGATGGAAGATTGTTTTGTTGTTCTTCTTGTTATCAGTGCACATGCAAATTGCTATGGAAATGTGCTGTTGTCACGGTCACTGTTTGCTGTGCATGAGGCTAGAAACAATAAAAAGAT
>XM_021563531.2
AATCAGAGATAAGAGGTGGTGACATTGGTGGCAGGGCTGTATTATGGGAGCCTTAAGAGTCTCATTGAACTTGTCTGTTTCTGGATCTCAACGAATAAGACCGGCCCAGCACTACTTTACCATCTCTCTTCCCTGTGGGGTTTGGAGGTAATCCAATCTAAACATGGCAGATGAAGAAAATGAGGAGGAAGTCGAGGTTGAAGTCCCAGCAGAGGAAGaaccagagccagagccagaagtAGAAGAGCCCACTGCAGTAGAAGCTGGTGGAGAGACTCAAGATTCCAAAGCCAAACCAAAAAGTTTTATGCCAAATGTTGCCCCTCCAAAGCTACCAGAGGGAGATGGTAAAGTCGATTTTGACGACCTGCATAGGAAGCGTCAAGAGAAGGACATGGCTGAGCTGACCTCTCTGATTGAGTCTCACTTTGTCCAGAGGAAGAAAGATGAAGATGAGCTCATCAGTCTCGTCAACAGGATTgAGAAGCGTCGTACCGAGAGGGCAGAGCAGCAGAGGATTCGTGctgagcaagagaaagagagacaggcccGTCTAGCCgaagagaaagagaagagggagcaAGATGAACAGCGTAGGAAGCACGATGATGACGCTAAGAAGAAGAAGGCCCTCACTACCATGACTCACACGTACGGTGGCATCCAACAGAAGCAAGAGGGCAAGAAAGGAGCCAAGAAGCAGacggagagagaaaagaagaagaagattCTGGCTGACAGAAGGAAGGCTCTGATCATTGACCATCTCAACGAGGACAAACTCAAGGAGAAGGCCAATGAGCTGTGGCAGTGGATGATGGAGTTGGAGGCGGAGAAGTTTGACCTCGGCGAGAAACTGAAGAAGCAGAAATACGACATGAATGTTCTCCAGACCCGAATCAATGAGCAGCAGAAGTTTGCCAAGGGCAGAGGCAAGGCCAAGGCGGTCAGGAGGTAATGAGACCTGGCAGGATGAAGTCTCCAGGACTGAGACGCCAGATGATGATGGAAGATTGTTTTGTTGTTCTTCTTGTTATCAGTGCACATGCAAATTGCTATGGAAATGTGCTGTTGTCACGGTCACTGTTTGCTGTGCATGAGGCTAGAAACAATAAAAAGAT
>XM_021563535.2
TCAGAGATAAGAGGTGGTGACATTGGTGGCAGGGCTGTATTATGGGAGCCTTAAGAGTCTCATTGAACTTGTCTGTTTCTGGATCTCAACGAATAAGACCGGCCCAGCACTACTTTACCATCTCTCTTCCCTGTGGGGTTTGGAGGTAATCCAATCTAAACATGGCAGATGAAGAAAATGAGGAGGAAGCTGGTGGAGAGACTCAAGATTCCAAAGCCAAACCAAAAAGTTTTATGCCAAATGTTGCCCCTCCAAAGCTACCAGAGGGAGATGGTAAAGTCGATTTTGACGACCTGCATAGGAAGCGTCAAGAGAAGGACATGGCTGAGCTGACCTCTCTGATTGAGTCTCACTTTGTCCAGAGGAAGAAAGATGAAGATGAGCTCATCAGTCTCGTCAACAGGATTgAGAAGCGTCGTACCGAGAGGGCAGAGCAGCAGAGGATTCGTGctgagcaagagaaagagagacaggcccGTCTAGCCgaagagaaagagaagagggagcaAGATGAACAGCGTAGGAAGCACGATGATGACGCTAAGAAGAAGAAGGCCCTCACTACCATGACTCACACGTACGGTGGCATCCAACAGAAGCAAGAGGGCAAGAAAGGAGCCAAGAAGCAGacggagagagaaaagaagaagaagattCTGGCTGACAGAAGGAAGGCTCTGATCATTGACCATCTCAACGAGGACAAACTCAAGGAGAAGGCCAATGAGCTGTGGCAGTGGATGATGGAGTTGGAGGCGGAGAAGTTTGACCTCGGCGAGAAACTGAAGAAGCAGAAATACGACATGAATGTTCTCCAGACCCGAATCAATGAGCAGCAGAAGTTTGCCAAGGGCAGAGGCAAGGCCAAGGCGGTCAGGAGGTAATGAGACCTGGCAGGATGAAGTCTCCAGGACTGAGACGCCAGATGATGATGGAAGATTGTTTTGTTGTTCTTCTTGTTATCAGTGCACATGCAAATTGCTATGGAAATGTGCTGTTGTCACGGTCACTGTTTGCTGTGCATGAGGCTAGAAACAATAAAAAG

Function

NR:

description
PREDICTED: troponin T, cardiac muscle-like isoform X6

GO: NA

KEGG:

id description
K12045 TNNT2; troponin T, cardiac muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944548.1 False 1152 mRNA 0.49 17 50378042 50391018
XM_036944550.1 False 1115 mRNA 0.49 16 50378054 50391014
XM_021563532.2 False 1102 mRNA 0.48 15 50378054 50391016
XM_036944549.1 False 1135 mRNA 0.49 17 50378054 50391016
XM_021563531.2 False 1121 mRNA 0.49 16 50378054 50391017
XM_021563535.2 True 1045 mRNA 0.48 13 50378056 50391015

Neighbor

gene id symbol gene type direction distance location
LOC110490247 LOC106576065 coding downstream 23390 50341725 ~ 50354652 (-)
LOC110490246 LOC106576063 coding downstream 70080 50305590 ~ 50307962 (-)
LOC110490244 LOC106609225 coding downstream 76960 50290050 ~ 50301082 (-)
LOC110490245 tmem209 coding downstream 88040 50284220 ~ 50290002 (-)
LOC110490242 ahcyl2 coding downstream 94791 50236625 ~ 50283251 (-)
LOC110490253 LOC105029072 coding upstream 240 50391258 ~ 50444898 (-)
LOC110490255 tnni1 coding upstream 69736 50460754 ~ 50467994 (-)
LOC110490257 LOC106576073 coding upstream 395496 50786514 ~ 50929155 (-)
LOC110490739 LOC106576074 coding upstream 593977 50984995 ~ 51090056 (-)
LOC110490260 LOC106576076 coding upstream 704817 51095835 ~ 51123705 (-)
G1303168 NA non-coding downstream 197466 50180351 ~ 50180576 (-)
G1302981 NA non-coding downstream 229565 50148213 ~ 50148477 (-)
G1302976 NA non-coding downstream 231462 50145739 ~ 50146580 (-)
LOC110490235 LOC106576052 non-coding downstream 233098 50104336 ~ 50144944 (-)
G1302960 NA non-coding downstream 253106 50124703 ~ 50124936 (-)
G1303246 NA non-coding upstream 8483 50399501 ~ 50400084 (-)
G1303384 NA non-coding upstream 150411 50541429 ~ 50541656 (-)
G1303441 NA non-coding upstream 190949 50581967 ~ 50582275 (-)
G1303442 NA non-coding upstream 191404 50582422 ~ 50582797 (-)
G1302602 NA other downstream 713746 49663951 ~ 49664296 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 1538891 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 2674004 47584674 ~ 47707520 (-)
tbc1d22a tbc1d22a other downstream 3158427 47217532 ~ 47405004 (-)
LOC110490264 LOC106576080 other upstream 808211 51199223 ~ 51205927 (-)
LOC110490744 LOC106576129 other upstream 1395613 51785488 ~ 51793354 (-)
G1304896 LOC107662719 other upstream 1530477 51921495 ~ 51922528 (-)
G1304988 NA other upstream 1598693 51989711 ~ 51990173 (-)
LOC110490288 LOC106609184 other upstream 2415965 52630838 ~ 52809711 (-)

Expression


Co-expression Network