LOC110490261 (LOC106609216)


Basic Information

Item Value
gene id LOC110490261
gene name LOC106609216
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51124030 ~ 51126635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563549.2
ATGCGTCTTTATGCCTCTTCCCTGCAGGTTTTCAGACAGCTGGTTAGACACCAGTCTACAGACACCAGCCTGATCCTGGAGAGATCGATTAACCGTGTCCAGCTGCTGGGCCGCGTGGGGCAGGACCCTGTCATGAGACAGGTGGAGGGACGGAACCCCGTCACCATTTTCTCCATGGCAACCAACGAGATGTGGCGCTCCGGGGACGTGGAGACGTCTCCCGCAGGAGATGTCAGCCAGAAGACGACGTGGCATCGTGTGTCAATCTTCAAGCCTGGTCTGAGGGATGTGGCCTACCAGTATGTCAAGAAAGGGTCGAGGGTTCTGGTGGAGGGGAAGTTGGATTACGGTGAATACGTAGACAAGAACAACGTCAGACGCCAGGCTACTACCATCATTGCAGACAATATTGTATTCTTAAGCGACAACATTCGAGGGAGGGACCAATGAAGGAAGTGGCACTCTTCATCTAGGAGGAAGACTGGAGCTCTTTCTGTGTAGCTACTCTAGTGTCTATATATCAACTGACTGTTGGAGCTGTGTGCCTGCTATCTAAATGGGACAGAACACAGAGTAAAACCTCTCTTGACTGTAGAGTGAGTGTTGTTGGAACGGGTATAAACCCAAGTTTGGGGATaacctgcagttatggaatgtttgctcacgagtataattaattggctgatgacctggatggaatcatgtgatccttccttaacccataggagGTACCATCcaattgactacttcaaaatggtcaatgtcctcaatggcactgcccatgctaaaacatgCTTATGAGTATTAAAGTACTCTATCATTCTCTGCGTGCACCAGGGTATACCTAAACATGTGGTTACACGTGTGTATTTTAGCCACCAAAATTGTTATGTTACTAATCTTAGTTTACGCTCATTTGTGGTATTATTGGTGGAGTACAACTAATGGAACTGCAGTTCAATGCAGGATGAAAAGGATCATGCCTTAAAAGTGAGGACTTATGCTTGTTTTCCCAGAGAAGCCAAATCACAGATGAGAGAAATAAATGGGTGATGTGTGACTGACATAAGGCTGAACCCAAAACTATGACTGTGCCAGTTTCATATTGAATGTTATACCACCTGTTTTCTTCTAAGCATGTCTTTCTGTTCTATTTCAAAGATAGTTTGAAACTTGTAACTATTTGTTTATTTTCGGTTTCATTCCACTTTAAAAAGTTAATTTTTTTTTCCCTTCCGGAAATCACCAGATTCTCACCTCCATTCTGTCTGGGCAAATGTTGTACGCATGTTGTTTTAATGTACTTGTATGTATCATGTAgaatatacatttttttcccca
>XM_021563551.2
GACCTATATTAGCGACGGACCGGAAGCAGCATGGACTGAGGATTTCGGTTTCTGCATCATTACGTCCAGCAAACAGAGGGGATGTTGAGAAACGGAGCAGCACAGGTTTTCAGACAGCTGGTTAGACACCAGTCTACAGACACCAGCCTGATCCTGGAGAGATCGATTAACCGTGTCCAGCTGCTGGGCCGCGTGGGGCAGGACCCTGTCATGAGACAGGTGGAGGGACGGAACCCCGTCACCATTTTCTCCATGGCAACCAACGAGATGTGGCGCTCCGGGGACGTGGAGACGTCTCCCGCAGGAGATGTCAGCCAGAAGACGACGTGGCATCGTGTGTCAATCTTCAAGCCTGGTCTGAGGGATGTGGCCTACCAGTATGTCAAGAAAGGGTCGAGGGTTCTGGTGGAGGGGAAGTTGGATTACGGTGAATACGTAGACAAGAACAACGTCAGACGCCAGGCTACTACCATCATTGCAGACAATATTGTATTCTTAAGCGACAACATTCGAGGGAGGGACCAATGAAGGAAGTGGCACTCTTCATCTAGGAGGAAGACTGGAGCTCTTTCTGTGTAGCTACTCTAGTGTCTATATATCAACTGACTGTTGGAGCTGTGTGCCTGCTATCTAAATGGGACAGAACACAGAGTAAAACCTCTCTTGACTGTAGAGTGAGTGTTGTTGGAACGGGTATAAACCCAAGTTTGGGGATaacctgcagttatggaatgtttgctcacgagtataattaattggctgatgacctggatggaatcatgtgatccttccttaacccataggagGTACCATCcaattgactacttcaaaatggtcaatgtcctcaatggcactgcccatgctaaaacatgCTTATGAGTATTAAAGTACTCTATCATTCTCTGCGTGCACCAGGGTATACCTAAACATGTGGTTACACGTGTGTATTTTAGCCACCAAAATTGTTATGTTACTAATCTTAGTTTACGCTCATTTGTGGTATTATTGGTGGAGTACAACTAATGGAACTGCAGTTCAATGCAGGATGAAAAGGATCATGCCTTAAAAGTGAGGACTTATGCTTGTTTTCCCAGAGAAGCCAAATCACAGATGAGAGAAATAAATGGGTGATGTGTGACTGACATAAGGCTGAACCCAAAACTATGACTGTGCCAGTTTCATATTGAATGTTATACCACCTGTTTTCTTCTAAGCATGTCTTTCTGTTCTATTTCAAAGATAGTTTGAAACTTGTAACTATTTGTTTATTTTCGGTTTCATTCCACTTTAAAAAGTTAATTTTTTTTTCCCTTCCGGAAATCACCAGATTCTCACCTCCATTCTGTCTGGGCAAATGTTGTACGCATGTTGTTTTAATGTACTTGTATGTATCATGTAgaatatacatttttttcccca
>XM_021563550.2
TACAATGATCCACGGACCTATATTAGCGACGGACCGGAAGCAGCATGGACTGAGGATTTCGGTTTCTGCATCATTCTGTCTGTCCACTTTACTGCCATAAAGTACGTCCAGCAAACAGAGGGGATGTTGAGAAACGGAGCAGCACAGGTTTTCAGACAGCTGGTTAGACACCAGTCTACAGACACCAGCCTGATCCTGGAGAGATCGATTAACCGTGTCCAGCTGCTGGGCCGCGTGGGGCAGGACCCTGTCATGAGACAGGTGGAGGGACGGAACCCCGTCACCATTTTCTCCATGGCAACCAACGAGATGTGGCGCTCCGGGGACGTGGAGACGTCTCCCGCAGGAGATGTCAGCCAGAAGACGACGTGGCATCGTGTGTCAATCTTCAAGCCTGGTCTGAGGGATGTGGCCTACCAGTATGTCAAGAAAGGGTCGAGGGTTCTGGTGGAGGGGAAGTTGGATTACGGTGAATACGTAGACAAGAACAACGTCAGACGCCAGGCTACTACCATCATTGCAGACAATATTGTATTCTTAAGCGACAACATTCGAGGGAGGGACCAATGAAGGAAGTGGCACTCTTCATCTAGGAGGAAGACTGGAGCTCTTTCTGTGTAGCTACTCTAGTGTCTATATATCAACTGACTGTTGGAGCTGTGTGCCTGCTATCTAAATGGGACAGAACACAGAGTAAAACCTCTCTTGACTGTAGAGTGAGTGTTGTTGGAACGGGTATAAACCCAAGTTTGGGGATaacctgcagttatggaatgtttgctcacgagtataattaattggctgatgacctggatggaatcatgtgatccttccttaacccataggagGTACCATCcaattgactacttcaaaatggtcaatgtcctcaatggcactgcccatgctaaaacatgCTTATGAGTATTAAAGTACTCTATCATTCTCTGCGTGCACCAGGGTATACCTAAACATGTGGTTACACGTGTGTATTTTAGCCACCAAAATTGTTATGTTACTAATCTTAGTTTACGCTCATTTGTGGTATTATTGGTGGAGTACAACTAATGGAACTGCAGTTCAATGCAGGATGAAAAGGATCATGCCTTAAAAGTGAGGACTTATGCTTGTTTTCCCAGAGAAGCCAAATCACAGATGAGAGAAATAAATGGGTGATGTGTGACTGACATAAGGCTGAACCCAAAACTATGACTGTGCCAGTTTCATATTGAATGTTATACCACCTGTTTTCTTCTAAGCATGTCTTTCTGTTCTATTTCAAAGATAGTTTGAAACTTGTAACTATTTGTTTATTTTCGGTTTCATTCCACTTTAAAAAGTTAATTTTTTTTTCCCTTCCGGAAATCACCAGATTCTCACCTCCATTCTGTCTGGGCAAATGTTGTACGCATGTTGTTTTAATGTACTTGTATGTATCATGTAgaatatacatttttttcccca

Function

NR:

description
single-stranded DNA-binding protein, mitochondrial-like isoform X2

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005739 mitochondrion cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
K03111 ssb; single-strand DNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563549.2 False 1341 mRNA 0.44 4 51124030 51125864
XM_021563551.2 False 1419 mRNA 0.44 6 51124030 51126621
XM_021563550.2 True 1461 mRNA 0.44 6 51124030 51126635

Neighbor

gene id symbol gene type direction distance location
LOC110490260 LOC106576076 coding downstream 325 51095835 ~ 51123705 (-)
LOC110490739 LOC106576074 coding downstream 33974 50984995 ~ 51090056 (-)
LOC110490257 LOC106576073 coding downstream 194875 50786514 ~ 50929155 (-)
LOC110490255 tnni1 coding downstream 656055 50460754 ~ 50467994 (-)
LOC110490253 LOC105029072 coding downstream 679132 50391258 ~ 50444898 (-)
c15h12orf56 cssa17h12orf56 coding upstream 100 51126735 ~ 51149243 (-)
LOC110490262 LOC106576078 coding upstream 25431 51152066 ~ 51165196 (-)
LOC110490264 LOC106576080 coding upstream 72588 51199223 ~ 51205927 (-)
LOC110490265 LOC106576097 coding upstream 148196 51274831 ~ 51280180 (-)
LOC110490268 LOC106576083 coding upstream 153843 51280478 ~ 51287146 (-)
G1304302 NA non-coding downstream 67572 51051493 ~ 51056458 (-)
G1304291 NA non-coding downstream 113629 51008866 ~ 51010401 (-)
G1304232 NA non-coding downstream 220543 50903224 ~ 50903487 (-)
G1304168 NA non-coding downstream 339383 50784421 ~ 50784647 (-)
G1304162 NA non-coding downstream 349476 50774308 ~ 50774554 (-)
G1304342 NA non-coding upstream 24881 51151516 ~ 51151716 (-)
G1304352 NA non-coding upstream 42699 51169334 ~ 51169922 (-)
G1304355 NA non-coding upstream 48137 51174772 ~ 51175011 (-)
G1304413 NA non-coding upstream 146803 51273438 ~ 51274430 (-)
G1304426 LOC100380855 non-coding upstream 177360 51303995 ~ 51315870 (-)
LOC110490244 LOC106609225 other downstream 823023 50290050 ~ 50301082 (-)
G1302602 NA other downstream 1459734 49663951 ~ 49664296 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 2284879 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 3419992 47584674 ~ 47707520 (-)
tbc1d22a tbc1d22a other downstream 3904415 47217532 ~ 47405004 (-)
LOC110490744 LOC106576129 other upstream 659996 51785488 ~ 51793354 (-)
G1304896 LOC107662719 other upstream 794860 51921495 ~ 51922528 (-)
G1304988 NA other upstream 863076 51989711 ~ 51990173 (-)
LOC110490288 LOC106609184 other upstream 1680348 52630838 ~ 52809711 (-)

Expression


Co-expression Network