c15h12orf56 (cssa17h12orf56)


Basic Information

Item Value
gene id c15h12orf56
gene name cssa17h12orf56
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51126735 ~ 51149243 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563546.2
TTAGAACAACTCAGGTTGGGGAGCGCTGGGATGAAGAGCGCACGGGCGTACCGCAAGCGACCAGAGCGTACACTTTCTTAACGATCAAGCCATGGATGTAATATCACCTAGGTTACTTTATCCCGTGGTGTGTAGCATTGCTATCGCAACTCACAGAGAGTGGAAGTAGCTCTAAAACTCTAGTGAACAAAGACCAAGGAATGCGAGTCTCTTCTCTCCGTTCGTGTTTCTCTGATGCAAGTGGCAGGTGAGCTCCGTTGGTGCCCCGGCTGTGCCCAATATGCCCATGGCTATGACGGGCGCGGGAGGCTTGCAGTGCAGGCGCAACAGTAAACTAGACTCATTTCTCAAGAGGAACACCGAGCGCGGGGTGTATGAGCGGATCCGCGCCTATGAACCGTGCGTGGTGGTCTCGGAGAGGGTGAATAAGGTGTTCATGCATGTCGTTCTCAGTGATGAGTGTGTGTATCTGGCTGAGTACCCGCCGCGCACCCTCACAACCGCGGTCGATTTCAGACACATCCGAGATATCGAGCTGGTCAATGATCTACCAGAGTTCCTCAGTGGCCGGGACCGGGAGCGCTCGCAGCACATTCGTGTGGTCTACGCCACTGCAAAGACATCTGGGAAGAAAAATGGTCTGCTCAGAGGAGAACCTCGCGTTCCTTCCGTCCCCTCTCCTCGCCAGCACTGGCCCATCTCCCCCTCCACGGAAGgTATTGGTGGAACTCTCCTGTCGACCCTCTCAGAACCCCCAGATAGAGACGGGTGGAACGTCTCCCCTGTCCCCATGAGTAGgaacagggaagaggaggaggaggaggaggaggtggaggaggaagaggaagaggtgctCCGACTGAAGACCACACGCTCAGCCTCCTGCCCTAACCCTGAAACACTTGGTCAGAGACAGGGTCTAAGACTGACCTTGCCTCGCCCTCTACCCCATCCAGTTTCCCcagccctctccctccactctccctctttctctccctctcccccgggTGACCGGACCCAGATTCCCCCGGAGGCCCCTGTGGTGCCCAGGAGAAGAGGCTCGGTGCTGGCTCGCCTGCTGAAGAGAGATAGGGTGgtcaaagagagagatggagagaaggatgaagaggagggaggagagagagaggcggagctGCATCTGTACGCTGTGTCGCCTACGTCTCGGATCTACCTGCACCTGCAAAGCTCTTGGAACAGTTACATTATAAGGTCAACGTTGCTGTTGGACCCTCTCTACCGAAGGAGATGCAATGTCATGTTGAGCACCTCCCCACAGAAACAACCCCCCATTAGTTGGGAGCGTACAGCCCACCTGTTCCGCCAGCTGAGCGGTGAGTTGCTTCAGGAGGGCATCAGCCTGGAGAGCCTATATCTGCTCCTCCAGGAGCTCCGCACTGCAGCACACCGCAGCATCACCCTCAGGAAACTCTTCTGGAGGtccaaTGACATGTTTCCATTCCTGGTGCCGATGCTGGAAGACTCCCTCCGGAGCTGTCAGAGGCCGGAGACCAACAAAGCAGACAGCCTACTGCTGTGTACTCTGATCGTTCAGACCCTGGCCTTGAtgttcagagagacagagatcgagCCGGCTCGACTCAACATGCTTACGGCCAAGCAAGGTGCCCTGACAGCCAGGCTGTTACTAGCGTTGGTGTGTGACCCAGAGCTCCAGAGCCAGACACAGGGATCGAGGAGAGTTTCCCCAGACTCAAGACAGGGCTCGCCCCCACATTCAGAGCTGCAGGGCCTGTTCGCGGAGTACCTGGATGCAGGGTGCTCTCTGCTATTTGAACTGGTGGTACTCTGTCAGGAGGCCAGCCGAACTCCGTCTCCAGAGCATTTTCTGACTGTAGGCTGGATCCTGAGAATACTGCAGCCTCATCCCTCTTTGCTGTCGTTCGTGGGGTACCAGGCTCGGCAGgtggtagtggtcctgtctgggTCCCAggaccctctcagcccatcccaggCTGCTTTGTTGTTCCAGCGCTGTAGGGTTCTGCTTGCCTGCCTGAAGTACAGCTCCCACCTGGGCCAGCACCTCCGCACGGAGTACAGAGAGGAGTTCAGGTATTATGTGAAGCTGCCCTGTGTGGAGGAGAAGTTGCCCCCCGACTACCCCATCAGCCAGCCTGCTCTACGCCTCGTCTCTCAACTGTTGGGACTTATCATACAGAAGTCCtgaccacatacactacatgaatTTCCTTGATTCATAGACAGAAGTACTTATTGTCATATATTTTTTAGAAGTATACTGTATATCCGGGTTTCTTAAACTATGGGtcgggacccaaagtgggccctgTGCATGTGAGATGTGGGTAGTGAGATATGAGAATACAGCTACAATCACATTTCTTCTTAATTTGGGTCGTTGGAGGACGATTTCGGTCACAGAGGATGGTCAATTGGACATATACTCTATCAAACTCTCTCACAGAACATAGGGACAGGACATTGCTCTGGGAAGGTGTGCCTTTGAGTGGTGTGTGCTTTCTGAAGGACCTTAGAAGTTTCCCTTTACACCTGGTGAGAGGTACGATGCGaggcatctctctctcctcttctctcctactCATGGCCTTGTTCTCAGGTTAACTGTCATGTAATGGTAGTCAGAATGGTCAGATTGGTTGTAATAAAAATGAATTAATGTAATCAACGTACTGCTTAATTAACTTTCTAGGATATTCAGCTTACACTAGACATGAATAAAAATGCCACTTGTTGAGAAAAAGGCATGTTCCAAAGATGTACCTTATTACTGTAGTAAATTATATAGGCCTACTGATTTGTAAGACCCTGTGTTCAGTATTAACTTAGACACATTATCTATTTGTTTTGATTCAAAATTGTATGCATTTATTTAGATTTTATTGTATATCATCATCTGAGTACTCTCTGTGAGCGAAGGATTGTAACCAAAGGTTTTCTAGAACTCAACCTTGTTAAATGGCCTAAAATAAAGATACTACCAGCTCTATTGTTCATATCTTGTTTCGCGCAGCTTCGCGGGAGACAACATCCATACTATTTGGAAATAAAACCTACAGGTTATGTAA

Function

NR:

description
uncharacterized protein C12orf56 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563546.2 True 3089 mRNA 0.52 13 51126735 51149243

Neighbor

gene id symbol gene type direction distance location
LOC110490261 LOC106609216 coding downstream 100 51124030 ~ 51126635 (-)
LOC110490260 LOC106576076 coding downstream 3030 51095835 ~ 51123705 (-)
LOC110490739 LOC106576074 coding downstream 36679 50984995 ~ 51090056 (-)
LOC110490257 LOC106576073 coding downstream 197580 50786514 ~ 50929155 (-)
LOC110490255 tnni1 coding downstream 658760 50460754 ~ 50467994 (-)
LOC110490262 LOC106576078 coding upstream 2823 51152066 ~ 51165196 (-)
LOC110490264 LOC106576080 coding upstream 49980 51199223 ~ 51205927 (-)
LOC110490265 LOC106576097 coding upstream 125588 51274831 ~ 51280180 (-)
LOC110490268 LOC106576083 coding upstream 131235 51280478 ~ 51287146 (-)
LOC110490266 LOC106609208 coding upstream 140368 51289611 ~ 51301497 (-)
G1304302 NA non-coding downstream 70277 51051493 ~ 51056458 (-)
G1304291 NA non-coding downstream 116334 51008866 ~ 51010401 (-)
G1304232 NA non-coding downstream 223248 50903224 ~ 50903487 (-)
G1304168 NA non-coding downstream 342088 50784421 ~ 50784647 (-)
G1304162 NA non-coding downstream 352181 50774308 ~ 50774554 (-)
G1304342 NA non-coding upstream 2273 51151516 ~ 51151716 (-)
G1304352 NA non-coding upstream 20091 51169334 ~ 51169922 (-)
G1304355 NA non-coding upstream 25529 51174772 ~ 51175011 (-)
G1304413 NA non-coding upstream 124195 51273438 ~ 51274430 (-)
G1304426 LOC100380855 non-coding upstream 154752 51303995 ~ 51315870 (-)
LOC110490244 LOC106609225 other downstream 825728 50290050 ~ 50301082 (-)
G1302602 NA other downstream 1462439 49663951 ~ 49664296 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 2287584 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 3422697 47584674 ~ 47707520 (-)
tbc1d22a tbc1d22a other downstream 3907120 47217532 ~ 47405004 (-)
LOC110490744 LOC106576129 other upstream 637388 51785488 ~ 51793354 (-)
G1304896 LOC107662719 other upstream 772252 51921495 ~ 51922528 (-)
G1304988 NA other upstream 840468 51989711 ~ 51990173 (-)
LOC110490288 LOC106609184 other upstream 1657740 52630838 ~ 52809711 (-)

Expression


Co-expression Network