LOC110490262 (LOC106576078)


Basic Information

Item Value
gene id LOC110490262
gene name LOC106576078
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51152066 ~ 51165196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563553.2
GTGCATGAATTACCGCTCTACAGCGGGTTACGTAAGAGCTGCCGTCAGAACAGGGGATcacagggagcagagagagaaggaaagcagagaggaaggcagagagagagagaagggacagaggcagggagtaaagagagagagagtagagagaaaaagGCATTGTGCAGAGATTGCAGGGACAGGCAGATTACAGAGTGGCTACGATCCACAGCGCACCAGCGACATGGGCCACACACAGACCTCTTTGTCTCCACTCAGGGAGTGAAGAGACGAGACTAGGACTGGGAAGAGGACAGGACACTGTGAGAGGAAGTGATTTGAAGAACAACTGTGTTTCTGCAGCTTTTGCTGGGGCACCTTGAGTGGCGGGGCGGTAAGGGACCAGCTGTGAGTGTCATCTGGCCATGAGAGAGTGACGGAGAAAGGACATCTACTGCTACTGAGGACGTCTTGGTATCTTCCTCTCCTGCCTGTCCCCATGTCTAGAGGAGGTAGGCCCCCGGGTGGGTGGGCCCCAATGTGGCCCCTGGCGTGTGCACTGACCCTGGCTGCATGCTCGTCGGTCAGCCCCCTCCTCCAAGAGACCACCTCTGATCCTCCCATTGCTACAGAGACACAGACTGGAGTATGGACACAGCCAGAGCTTCAGACAAAGGCACAGACtgtggcacagacacagacagaaccaCAGACACAGCCTAAGCTACAGACTGAGTCCCCAACAGAGTTAGAGTCACAGGCAGCTACCATCAACCACACAGgtctgttgtgtgtgtcCGTGCTTCCCCCGAGGCGCGGGTCATTCTATGTGGAGCATGGGACAGGGGTGTCGGTGGGTACAGTGCTGGCCTTCTGGTGCAGGGAGGGCTACCAGCTGGTGGGCAGTGATAAGATCTCCTGCAGCGTCTGGGCAGGCAAACCCCAGTGGAGTAACTTCCTGCCAGTCTGTGAGGCCATATCGAGGCCAGAGGACCGGGGTCTGCGCGTGGCCGTGTTGGCCTCAGTGGTCAGTGGCATCGTCATCCTGGCaatgtctctctccttcatcATCTGCTGCCTGCAGGAACGCACTGGGAAGGACAGGGCCACCAGGAGGGACGGCAGGAGcagGCGTAGAGACACCCGGTCTTCTCGGCGTAGTGAGTGctggctggagagagaggagggggactgGGGCACGTTCCCCCCTCCTAAGATCTTCCACCTGTCACAGCGGCCGGACCTCCGGCTGGCTGCAGAAAGCCCTGTCTACCTGGGGGGCATGGCCGGCTTCGACAACTGTGGATACCAGCGgagtcAGGAGAGCCTACTGAAGGCCCCGCTTCCTGGTCTGTTCCGGGCGGAGAGTCAGATCATCTACCCCCACGTGGTGCTCCAGAGAGTCCCCACCCCCACTGCCCCAACTGCCCCAACTGCCCCTGTCTACCCCCACAACATTCCCTCCAACTCCGGATGTGCTCCCTCACAGCCACACCACATGCCCCCATATCCTACCCCGCAGTATCCTATCCACAACTCCACCCCCCAGCGAGTTCCATGGCAAATGCAGCCCCATTGAACTGTCACTGTccactcgctctctccctctatggAGGTCAAGGGTCAATGAGGAAGGATCAAATAACACACTATTCCCTAATAAGTGCGCTACGTTTGAGCAGAGCCCCATGCAGCTAACCTTATACAAGTTTTGGTCAAAAGTAATAAGGAAAAGGAATAAGGTGTTATTTGCCATTTGAGAACAGCCCTCAGACCCCTGTCAGCGAGATGCTTCTACTACTGCAAGGATGGCTGGATGGGACACGtgttactgtatatactgtatggtatggactgacagagagaccagaggatCTTTTCCAGCCTCTTCTCTCACTGAGGAAGCCCTTTCTGCTGTTTCTAGTGTATCCACTTGTTGATGTCACTGACTGAAGACTGTGAGATGTTGTTTGGTGGTGGTCCCCAAGTCGCCACCGACCAAAGAAGAAATGGACTTAGCTGAGGAAGGTGGATACAGAAATCATCCCCAATACCATGTATGGGTGTATAATATATTATTCTTAAAGGTTATGAATATGCAAATTCATGTTTTTCATGAAATTGGATGATATTTGGATAAAAGTATGATGGccaaagtatgaaaaatgactgtttcgtctacattgataaagtttgGATTCTTGGATTCAGGTGACATCACCCTAACTctctcattttaatacaccaatggtaacatgatattctcttacctaatttaaataagtactGCCTTGTAACCAGCATCGGAGAAAGCGTGTTTGCAGAGGGGCGTGGTTtatatagctagatagctactctactggtgttagctagtcactggctagctaggtcttcagccagcGTGGAACTAAAGGGGGGACAGGTCGTTCAAAACTCTCAGTTGTCAGGTCAACACATCCGTCAGTGCTACTGTGAACCGCAGcaccagaaacatgtcaaacgggAGATGTATAAATCAAATATGTATGTCAttgatgcaatttcaatgttgtttgagttgctttgtgtatCACTTCCTGGTAGTTAGCCATGAAATAAAAAGTAATTTTCCAACATTTTTAGCATTTATATCCCAAAATAACATAATGGGGGATATTTCTGTCACTcaaaaggctattttacatgggAATCAGAATGACTGTTCAGGACATTTCATGATATGAGAAGGCCTTTCAGCAAAGTTCACCCATTATTTCCCCCTATTTGTTCTAAAGCTTTGGACTGAAACTTTGGAGAGCTCCTTACCTGTTGTTGAAGTCTTTGTCGTGTGTTTTTCTACGGTGGTAGGAGACTTGGAACAGTCACACCAACTAACCTGCACTTTATGGATTTTACTGACGGGCTGGCAATAGCAATTGCAAGAACTTTGCGCTGACTATTCCCGCAATATGTTTGTATGAAAAATGGTTTCTACCTAAAAACTGATTAAAGATATTTTTGTTTAGTTGAA

Function

NR:

description
uncharacterized protein LOC110490262

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563553.2 True 2989 mRNA 0.50 5 51152066 51165196

Neighbor

gene id symbol gene type direction distance location
c15h12orf56 cssa17h12orf56 coding downstream 2823 51126735 ~ 51149243 (-)
LOC110490261 LOC106609216 coding downstream 25431 51124030 ~ 51126635 (-)
LOC110490260 LOC106576076 coding downstream 28361 51095835 ~ 51123705 (-)
LOC110490739 LOC106576074 coding downstream 62010 50984995 ~ 51090056 (-)
LOC110490257 LOC106576073 coding downstream 222911 50786514 ~ 50929155 (-)
LOC110490264 LOC106576080 coding upstream 34027 51199223 ~ 51205927 (-)
LOC110490265 LOC106576097 coding upstream 109635 51274831 ~ 51280180 (-)
LOC110490268 LOC106576083 coding upstream 115282 51280478 ~ 51287146 (-)
LOC110490266 LOC106609208 coding upstream 124415 51289611 ~ 51301497 (-)
LOC110490744 LOC106576129 coding upstream 620292 51785488 ~ 51793354 (-)
G1304342 NA non-coding downstream 350 51151516 ~ 51151716 (-)
G1304302 NA non-coding downstream 95608 51051493 ~ 51056458 (-)
G1304291 NA non-coding downstream 141665 51008866 ~ 51010401 (-)
G1304232 NA non-coding downstream 248579 50903224 ~ 50903487 (-)
G1304168 NA non-coding downstream 367419 50784421 ~ 50784647 (-)
G1304352 NA non-coding upstream 4138 51169334 ~ 51169922 (-)
G1304355 NA non-coding upstream 9576 51174772 ~ 51175011 (-)
G1304413 NA non-coding upstream 108242 51273438 ~ 51274430 (-)
G1304426 LOC100380855 non-coding upstream 138799 51303995 ~ 51315870 (-)
G1304430 NA non-coding upstream 146815 51312011 ~ 51312442 (-)
LOC110490244 LOC106609225 other downstream 851059 50290050 ~ 50301082 (-)
G1302602 NA other downstream 1487770 49663951 ~ 49664296 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 2312915 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 3448028 47584674 ~ 47707520 (-)
tbc1d22a tbc1d22a other downstream 3932451 47217532 ~ 47405004 (-)
G1304896 LOC107662719 other upstream 756299 51921495 ~ 51922528 (-)
G1304988 NA other upstream 824515 51989711 ~ 51990173 (-)
LOC110490288 LOC106609184 other upstream 1641787 52630838 ~ 52809711 (-)

Expression


Co-expression Network