LOC110490264 (LOC106576080)


Basic Information

Item Value
gene id LOC110490264
gene name LOC106576080
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51199223 ~ 51205927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563555.2
ATTCTCTATGGTGAAAAACCCCAAACTTTTGCGTCACTGAGATGCGACGGAAGTCCTTACTCCACAAGCAGCTGTCCTTGAATGCACTGGGGAAACATGTTACACAACTAAATGCTCTTTTTGGCATTATTGAACAAACTATTCATACCGGAGTAGTGATATAAACATTCATGTAAATTTCACCGAGCCCAGCGATGTCTGCCCCTGACTCGAAACAGAGAAAAGCATGCTGGGGCACTAGGGACGAGCTGTGGAAGTGCCTTGATTATAACCAGGACAATGCCGCCTCCTGTGAGAAGTTCCAGAAAGAGTTTGAGGCGAGCTGTCCTGCTCAGTGGGTGAAATACTTCACCAAGAGGAGAGACTTCTTGAAGTACAAGGAGAAGATGCAGACGGAGGGCTTTGAGCCTGCTGCCGGGCCTAAAGAGTCACAGTCCTAGCCGGTAGCCACTGGTCAGAAGACTGAGAGGAGGGCTTCCAGGGGCCTCCTGGTTGAGGATGGACAGCAGTGGACTGTCACTGGACACTAAGAGCACAATCCTGCTATGCCTCCCAGCGACGACAGCCGCTGGAGGTCAGTGACCTCACACCTAGACCTGAACACGCCGGGGTAGATGTCACCTACGGGCCGCGGTCAGATTCTCAAGCCTCTCCCCGAGTGTGCACTTAACTTGGTCACACCTTGCCTCCGACTAGTGACCATACCGGCGTCACACGGGGGACAGGTGTGTGGTGACGTAACCACGGCGAGTGCTGTGGAAAGTGCACCCCTCAAAAGTCACTGACAATGGTTCTCCAGGCTTTCTCcgtgtctctctgctctctcaataCAACATCAAGTGGTTGTATGTGGTGTTGACAATGCTTTTATTTGACCAAATATCAACTGAACACATCAACAGCTCCGTAACGGATAGTCTTAACCACCGACTCATTTCTTATTCATGCTATTGTCAAAGATGGATGCAGAGATGCTTTATTTATGAATagacagtgactgtgtgtgtgtgatttgttgTGTTAAATAAAGATGAGTCAATGGTT
>TU1487991
AGCAGCTGTCCTTGAATGCACTGGGGAAACATGTTACACAACTAAATGCTCTTTTTGGCATTATTGAACAAACTATTCATACCGGAGTAGTGATATAAACATTCATGTAAATTTCACCGAGCCCAGCGATGTCTGCCCCTGACTCGAAACAGAGAAAAGCATGCTGGGGCACTAGGGACGAGCTGTGGAAGTGCCTTGATTATAACCAGGACAATGCCGCCTCCTGTGAGAAGTTCCAGAAAGAGTTTGAGGCGAGCTGTCCTGCTCAGTGGGTGAAATACTTCACCAAGAGGAGAGACTTCTTGAAGTACAAGGAGAAGATGCAGACGGAGGGCTTTGAGCCTGCTGCCGGGCCTAAAGAGTCACAGTCCTAGCCGGTAGCCACTGGTCAGAAGACTGAGAGGAGGGCTTCCAGGGGCCTCCTGGTTGAGGATGGACAGCAGTGGACTGTCACTGGACACTAAGAGCACAATCCTGCTATGCCTCCCAGCGACGACAGCCGCTGGAGGTCAGTGACCTCACACCTAGACCTGAACACGCCGGGGTAGATGTCACCTACGGGCCGCGGTCAGATTCTCAAGCCTCTCCCCGAGTGTGCACTTAACTTGGTCACACCTTGCCTCCGACTAGTGACCATACCGGCGTCACACGGGGGACAGGTGTGTGGTGACGTAACCACGGCGAGTGCTGTGGAAAGTGCACCCCTCAAAAGTCACTGACAATGGTTCTCCAGGCTTTCTCcgtgtctctctgctctctcaataCAACATCAAGTGGTTGTATGTGGTGTTGACAATGCTTTTATTTGACCAAATATCAACTGAACACATCAACAGCTCCGTAACGGATAGTCTTAACCACCGACTCATTTCTTATTCATGCTATTGTCAAAGATGGATGCAGAGATGCTTTATTTATGAATagacagtgactgtgtgtgtgtgatttgttgTGTTAAATAAAGATGAGTCA

Function

NR:

description
cytochrome c oxidase assembly factor 6 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563555.2 False 1044 mRNA 0.49 3 51199223 51205927
TU1487991 True 972 TUCP 0.50 3 51199229 51205861
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Neighbor

gene id symbol gene type direction distance location
LOC110490262 LOC106576078 coding downstream 34027 51152066 ~ 51165196 (-)
c15h12orf56 cssa17h12orf56 coding downstream 49980 51126735 ~ 51149243 (-)
LOC110490261 LOC106609216 coding downstream 72588 51124030 ~ 51126635 (-)
LOC110490260 LOC106576076 coding downstream 75518 51095835 ~ 51123705 (-)
LOC110490739 LOC106576074 coding downstream 109167 50984995 ~ 51090056 (-)
LOC110490265 LOC106576097 coding upstream 68904 51274831 ~ 51280180 (-)
LOC110490268 LOC106576083 coding upstream 74551 51280478 ~ 51287146 (-)
LOC110490266 LOC106609208 coding upstream 83684 51289611 ~ 51301497 (-)
LOC110490744 LOC106576129 coding upstream 579561 51785488 ~ 51793354 (-)
LOC118936382 NA coding upstream 611181 51817108 ~ 51819851 (-)
G1304355 NA non-coding downstream 24212 51174772 ~ 51175011 (-)
G1304352 NA non-coding downstream 29301 51169334 ~ 51169922 (-)
G1304342 NA non-coding downstream 47507 51151516 ~ 51151716 (-)
G1304302 NA non-coding downstream 142765 51051493 ~ 51056458 (-)
G1304291 NA non-coding downstream 188822 51008866 ~ 51010401 (-)
G1304413 NA non-coding upstream 67511 51273438 ~ 51274430 (-)
G1304426 LOC100380855 non-coding upstream 98068 51303995 ~ 51315870 (-)
G1304430 NA non-coding upstream 106084 51312011 ~ 51312442 (-)
G1304464 NA non-coding upstream 173533 51379460 ~ 51382461 (-)
G1304539 NA non-coding upstream 312330 51518257 ~ 51519053 (-)
LOC110490244 LOC106609225 other downstream 898216 50290050 ~ 50301082 (-)
G1302602 NA other downstream 1534927 49663951 ~ 49664296 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 2360072 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 3495185 47584674 ~ 47707520 (-)
tbc1d22a tbc1d22a other downstream 3979608 47217532 ~ 47405004 (-)
G1304896 LOC107662719 other upstream 715568 51921495 ~ 51922528 (-)
G1304988 NA other upstream 783784 51989711 ~ 51990173 (-)
LOC110490288 LOC106609184 other upstream 1601056 52630838 ~ 52809711 (-)
G1306232 LOC106576137 other upstream 1848922 53054849 ~ 53062280 (-)

Expression

LOC110490264(LOC106576080) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110490264(LOC106576080) Expression in each Bioproject

Bar chart with 21 bars.
LOC110490264(LOC106576080) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network