LOC110490265 (LOC106576097)


Basic Information

Item Value
gene id LOC110490265
gene name LOC106576097
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51274831 ~ 51280180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563556.2
CATAGATTGACGTCTGAAGCCACCAATAATGTTTGCGAAAAAGAATAATATTTATCTCTCACTTCTCGTTGATGGCGACTGTTTTGTCAGATGAGCTAAAGAAGCATTATAACATGGTGTGGGAAGTTAAGAGTCCtctgagcagcagcagtactaTGTTGGATATCACAGGGCCAGAGGCAGGTAGAGACCAGGGATTGGTCCTGCTCCAGTGTGAAGAACAGCTGCCCTCCTCCCCCGGATGCCCCACCAGTGTCAGCCACATGGAATACGATGACCTCCCGgagctggaggaggtggaggaggaccaGACAGCCGCTGTTGTGTTTCAGGTGGGGGCGAGGGTGTCCCATCAGGAACGTGAtggacactcacacactcacacggcCGGGCCCCCGGACACACACTGGCTCACACAGCTAGCTCACATTGCCACGGGCCCCCAGAGTCCCTTGCTACAGGGCTCCACTCAGGTCGTCAGTTCAACTCCCATCCACATCTTTGGCACCAGTAGTAACCTCCATTCCTACGCCCGGCCTCCCCACACCCGGCCTCCCTGCACCTCCAGCAGCCTGCCCTCTAGAGGCCAACACAGGGAGTGCAGCAGGCGTGTCAGGgtCAGTAGTGAGTGTGAGTCTGCTGTGTACTGTCACTCCTCTGTGTCTGATGACGAGGACATGGGCTGGAGCCACTCTTGGCCACCTACTGCCTGGCACTGCTTCCTCAaagGCACTCGTCTGCAGTTCCATAAGGGTTCTAGTGTGGAGTGGCAGGATGCTGAGGAACTGGTGTCGGACCAAGACTTAGACGATGAGACAGAGGCTATATCCCACCCCCTGAAGGGCTATGGTCGTGAGGGCCTGAGGCTGGTGTCCCACACAGAGAGCCGGGCGTTTGGCCAGTCCGTCCTCAAGCTGACCTTTGACCCAGGTGCCTGTGGGGAGTGGCATCTGTCCGCTGAGTGTCAGCTGGACCACCCGTTCTATGTCAGAAACAAAGGCTGGTCGTCGTTCTACCCCAGTCTGACCGTGGTGCAGTATGGGATCCCGTGCTATGAGGTGATGGTGGGTGACGTGTGTCTGCCTCCTGGACACAGAGATGCCATCCACACTGACGACTCCTTGGTGTTCGACACGTTCAGGAGTTATGACTTCACTCCCCTGGACTCGTCGGCGGTGTACGTTCTGAGCAGCATGGCCCGGCAGCGTAGGGCCTCCCAGTCCGGCGGGGGCGCCGTCAGCCCCGACCAAGACACACACCGCAACAAGCCAATTAAGAGCCAGCGGGACTCAGGAGCAGCCGGCGTGGCTTCGCCCACGAAGTGCAAGCGGCCAATGAATGCATTCATGCTATTCGCAAAGAAGTTCAGGTTGGAGTACACCCAGATGTACCCTGGGAAggacaacagAGCGATCAGTGTGATCCTGGGAGAGAAGTGGAAGAAAatgcgaggagaggagaggaggatgtacaCCATGGAGGCCAAGGCCCTGGCTGACAAGCAGAAGAGACTCAACCCGGACTGCTGGAAACGCAAGAGAACCAACTCAGGTTCCCAGGGGAACTAAGAGACGCAGACACacgagagagggatgaggcagatgacaggagaaaagagagggagacgaTGGAGGGGAGGGCAAACTTGGAAGAGGGGTGTATGGGGGGAGGCAGTACACGGAAGACACATGCGCgcgcacatactcacacacacactttagattCGAATatagatgtacagttgaagtctgaagtttacatacacctttgccaaataaacttacgacttcaactgtatttgtcaaaggtgtatgtaaacttatgacttcaactgtacatacacttaggctggagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagttggttaggacatcgactttgtgcatgacaca
>XM_021563557.2
CATAGATTGACGTCTGAAGCCACCAATAATGTTTGCGAAAAAGAATAATATTTATCTCTCACTTCTCGTTGATGGCGACTGTTTTGTCAGATGAGCTAAAGAAGCATTATAACATGGTGTGGGAAGTTAAGAGTCCtctgagcagcagcagtactaTGTTGGATATCACAGGGCCAGAGGCAGGTAGAGACCAGGGATTGGTCCTGCTCCAGTGTGAAGAACAGCTGCCCTCCTCCCCCGGATGCCCCACCAGTGTCAGCCACATGGAATACGATGACCTCCCGgagctggaggaggtggaggaggaccaGACAGCCGCTGTTGTGTTTCAGGTGGGGGCGAGGGTGTCCCATCAGGAACGTGAtggacactcacacactcacacggcCGGGCCCCCGGACACACACTGGCTCACACAGCTAGCTCACATTGCCACGGGCCCCCAGAGTCCCTTGCTACAGGGCTCCACTCAGGTCGTCAGTAGTAACCTCCATTCCTACGCCCGGCCTCCCCACACCCGGCCTCCCTGCACCTCCAGCAGCCTGCCCTCTAGAGGCCAACACAGGGAGTGCAGCAGGCGTGTCAGGgtCAGTAGTGAGTGTGAGTCTGCTGTGTACTGTCACTCCTCTGTGTCTGATGACGAGGACATGGGCTGGAGCCACTCTTGGCCACCTACTGCCTGGCACTGCTTCCTCAaagGCACTCGTCTGCAGTTCCATAAGGGTTCTAGTGTGGAGTGGCAGGATGCTGAGGAACTGGTGTCGGACCAAGACTTAGACGATGAGACAGAGGCTATATCCCACCCCCTGAAGGGCTATGGTCGTGAGGGCCTGAGGCTGGTGTCCCACACAGAGAGCCGGGCGTTTGGCCAGTCCGTCCTCAAGCTGACCTTTGACCCAGGTGCCTGTGGGGAGTGGCATCTGTCCGCTGAGTGTCAGCTGGACCACCCGTTCTATGTCAGAAACAAAGGCTGGTCGTCGTTCTACCCCAGTCTGACCGTGGTGCAGTATGGGATCCCGTGCTATGAGGTGATGGTGGGTGACGTGTGTCTGCCTCCTGGACACAGAGATGCCATCCACACTGACGACTCCTTGGTGTTCGACACGTTCAGGAGTTATGACTTCACTCCCCTGGACTCGTCGGCGGTGTACGTTCTGAGCAGCATGGCCCGGCAGCGTAGGGCCTCCCAGTCCGGCGGGGGCGCCGTCAGCCCCGACCAAGACACACACCGCAACAAGCCAATTAAGAGCCAGCGGGACTCAGGAGCAGCCGGCGTGGCTTCGCCCACGAAGTGCAAGCGGCCAATGAATGCATTCATGCTATTCGCAAAGAAGTTCAGGTTGGAGTACACCCAGATGTACCCTGGGAAggacaacagAGCGATCAGTGTGATCCTGGGAGAGAAGTGGAAGAAAatgcgaggagaggagaggaggatgtacaCCATGGAGGCCAAGGCCCTGGCTGACAAGCAGAAGAGACTCAACCCGGACTGCTGGAAACGCAAGAGAACCAACTCAGGTTCCCAGGGGAACTAAGAGACGCAGACACacgagagagggatgaggcagatgacaggagaaaagagagggagacgaTGGAGGGGAGGGCAAACTTGGAAGAGGGGTGTATGGGGGGAGGCAGTACACGGAAGACACATGCGCgcgcacatactcacacacacactttagattCGAATatagatgtacagttgaagtctgaagtttacatacacctttgccaaataaacttacgacttcaactgtatttgtcaaaggtgtatgtaaacttatgacttcaactgtacatacacttaggctggagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagttggttaggacatcgactttgtgcatgacaca
>XM_021563558.2
CATAGATTGACGTCTGAAGCCACCAATAATGTTTGCGAAAAAGAATAATATTTATCTCTCACTTCTCGTTGATGGCGACTGTTTTGTCAGATGAGCTAAAGAAGCATTATAACATGGTGTGGGAAGTTAAGAGTCCtctgagcagcagcagtactaTGTTGGATATCACAGGGCCAGAGGCAGGTAGAGACCAGGGATTGGTCCTGCTCCAGTGTGAAGAACAGCTGCCCTCCTCCCCCGGATGCCCCACCAGTGTCAGCCACATGGAATACGATGACCTCCCGgagctggaggaggtggaggaggaccaGACAGCCGCTGTTGTGTTTCAGGTGGGGGCGAGGGTGTCCCATCAGGAACGTGAtggacactcacacactcacacggcCGGGCCCCCGGACACACACTGGCTCACACAGCTAGCTCACATTGCCACGGGCCCCCAGAGTCCCTTGCTACAGGGCTCCACTCAGGTCGTCAGTAACCTCCATTCCTACGCCCGGCCTCCCCACACCCGGCCTCCCTGCACCTCCAGCAGCCTGCCCTCTAGAGGCCAACACAGGGAGTGCAGCAGGCGTGTCAGGgtCAGTAGTGAGTGTGAGTCTGCTGTGTACTGTCACTCCTCTGTGTCTGATGACGAGGACATGGGCTGGAGCCACTCTTGGCCACCTACTGCCTGGCACTGCTTCCTCAaagGCACTCGTCTGCAGTTCCATAAGGGTTCTAGTGTGGAGTGGCAGGATGCTGAGGAACTGGTGTCGGACCAAGACTTAGACGATGAGACAGAGGCTATATCCCACCCCCTGAAGGGCTATGGTCGTGAGGGCCTGAGGCTGGTGTCCCACACAGAGAGCCGGGCGTTTGGCCAGTCCGTCCTCAAGCTGACCTTTGACCCAGGTGCCTGTGGGGAGTGGCATCTGTCCGCTGAGTGTCAGCTGGACCACCCGTTCTATGTCAGAAACAAAGGCTGGTCGTCGTTCTACCCCAGTCTGACCGTGGTGCAGTATGGGATCCCGTGCTATGAGGTGATGGTGGGTGACGTGTGTCTGCCTCCTGGACACAGAGATGCCATCCACACTGACGACTCCTTGGTGTTCGACACGTTCAGGAGTTATGACTTCACTCCCCTGGACTCGTCGGCGGTGTACGTTCTGAGCAGCATGGCCCGGCAGCGTAGGGCCTCCCAGTCCGGCGGGGGCGCCGTCAGCCCCGACCAAGACACACACCGCAACAAGCCAATTAAGAGCCAGCGGGACTCAGGAGCAGCCGGCGTGGCTTCGCCCACGAAGTGCAAGCGGCCAATGAATGCATTCATGCTATTCGCAAAGAAGTTCAGGTTGGAGTACACCCAGATGTACCCTGGGAAggacaacagAGCGATCAGTGTGATCCTGGGAGAGAAGTGGAAGAAAatgcgaggagaggagaggaggatgtacaCCATGGAGGCCAAGGCCCTGGCTGACAAGCAGAAGAGACTCAACCCGGACTGCTGGAAACGCAAGAGAACCAACTCAGGTTCCCAGGGGAACTAAGAGACGCAGACACacgagagagggatgaggcagatgacaggagaaaagagagggagacgaTGGAGGGGAGGGCAAACTTGGAAGAGGGGTGTATGGGGGGAGGCAGTACACGGAAGACACATGCGCgcgcacatactcacacacacactttagattCGAATatagatgtacagttgaagtctgaagtttacatacacctttgccaaataaacttacgacttcaactgtatttgtcaaaggtgtatgtaaacttatgacttcaactgtacatacacttaggctggagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagttggttaggacatcgactttgtgcatgacaca
>XM_021563559.2
TCAGCGAATAACCAATTAACAAGAGAGGAGCCATAGATTGACGTCTGAAGCCACCAATAATGTTTGCGAAAAAGAATAATATTTATCTCTCACTTCTCGTTGATGGCGACTGTTTTGGGCCAGAGGCAGGTAGAGACCAGGGATTGGTCCTGCTCCAGTGTGAAGAACAGCTGCCCTCCTCCCCCGGATGCCCCACCAGTGTCAGCCACATGGAATACGATGACCTCCCGgagctggaggaggtggaggaggaccaGACAGCCGCTGTTGTGTTTCAGGTGGGGGCGAGGGTGTCCCATCAGGAACGTGAtggacactcacacactcacacggcCGGGCCCCCGGACACACACTGGCTCACACAGCTAGCTCACATTGCCACGGGCCCCCAGAGTCCCTTGCTACAGGGCTCCACTCAGGTCGTCAGTTCAACTCCCATCCACATCTTTGGCACCAGTAGTAACCTCCATTCCTACGCCCGGCCTCCCCACACCCGGCCTCCCTGCACCTCCAGCAGCCTGCCCTCTAGAGGCCAACACAGGGAGTGCAGCAGGCGTGTCAGGgtCAGTAGTGAGTGTGAGTCTGCTGTGTACTGTCACTCCTCTGTGTCTGATGACGAGGACATGGGCTGGAGCCACTCTTGGCCACCTACTGCCTGGCACTGCTTCCTCAaagGCACTCGTCTGCAGTTCCATAAGGGTTCTAGTGTGGAGTGGCAGGATGCTGAGGAACTGGTGTCGGACCAAGACTTAGACGATGAGACAGAGGCTATATCCCACCCCCTGAAGGGCTATGGTCGTGAGGGCCTGAGGCTGGTGTCCCACACAGAGAGCCGGGCGTTTGGCCAGTCCGTCCTCAAGCTGACCTTTGACCCAGGTGCCTGTGGGGAGTGGCATCTGTCCGCTGAGTGTCAGCTGGACCACCCGTTCTATGTCAGAAACAAAGGCTGGTCGTCGTTCTACCCCAGTCTGACCGTGGTGCAGTATGGGATCCCGTGCTATGAGGTGATGGTGGGTGACGTGTGTCTGCCTCCTGGACACAGAGATGCCATCCACACTGACGACTCCTTGGTGTTCGACACGTTCAGGAGTTATGACTTCACTCCCCTGGACTCGTCGGCGGTGTACGTTCTGAGCAGCATGGCCCGGCAGCGTAGGGCCTCCCAGTCCGGCGGGGGCGCCGTCAGCCCCGACCAAGACACACACCGCAACAAGCCAATTAAGAGCCAGCGGGACTCAGGAGCAGCCGGCGTGGCTTCGCCCACGAAGTGCAAGCGGCCAATGAATGCATTCATGCTATTCGCAAAGAAGTTCAGGTTGGAGTACACCCAGATGTACCCTGGGAAggacaacagAGCGATCAGTGTGATCCTGGGAGAGAAGTGGAAGAAAatgcgaggagaggagaggaggatgtacaCCATGGAGGCCAAGGCCCTGGCTGACAAGCAGAAGAGACTCAACCCGGACTGCTGGAAACGCAAGAGAACCAACTCAGGTTCCCAGGGGAACTAAGAGACGCAGACACacgagagagggatgaggcagatgacaggagaaaagagagggagacgaTGGAGGGGAGGGCAAACTTGGAAGAGGGGTGTATGGGGGGAGGCAGTACACGGAAGACACATGCGCgcgcacatactcacacacacactttagattCGAATatagatgtacagttgaagtctgaagtttacatacacctttgccaaataaacttacgacttcaactgtatttgtcaaaggtgtatgtaaacttatgacttcaactgtacatacacttaggctggagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagttggttaggacatcgactttgtgcatgacaca

Function

NR:

description
HMG box-containing protein 1-like isoform X4

GO: NA

KEGG:

id description
K21644 HBP1; HMG box transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563556.2 False 1950 mRNA 0.54 11 51274831 51280149
XM_021563557.2 False 1920 mRNA 0.55 11 51274831 51280149
XM_021563558.2 False 1917 mRNA 0.55 11 51274831 51280149
XM_021563559.2 True 1896 mRNA 0.55 11 51274831 51280180

Neighbor

gene id symbol gene type direction distance location
LOC110490264 LOC106576080 coding downstream 68904 51199223 ~ 51205927 (-)
LOC110490262 LOC106576078 coding downstream 109635 51152066 ~ 51165196 (-)
c15h12orf56 cssa17h12orf56 coding downstream 125588 51126735 ~ 51149243 (-)
LOC110490261 LOC106609216 coding downstream 148196 51124030 ~ 51126635 (-)
LOC110490260 LOC106576076 coding downstream 151126 51095835 ~ 51123705 (-)
LOC110490268 LOC106576083 coding upstream 298 51280478 ~ 51287146 (-)
LOC110490266 LOC106609208 coding upstream 9431 51289611 ~ 51301497 (-)
LOC110490744 LOC106576129 coding upstream 505308 51785488 ~ 51793354 (-)
LOC118936382 NA coding upstream 536928 51817108 ~ 51819851 (-)
LOC110490745 LOC106576126 coding upstream 847807 52127987 ~ 52131038 (-)
G1304413 NA non-coding downstream 401 51273438 ~ 51274430 (-)
G1304355 NA non-coding downstream 99820 51174772 ~ 51175011 (-)
G1304352 NA non-coding downstream 104909 51169334 ~ 51169922 (-)
G1304342 NA non-coding downstream 123115 51151516 ~ 51151716 (-)
G1304302 NA non-coding downstream 218373 51051493 ~ 51056458 (-)
G1304426 LOC100380855 non-coding upstream 23815 51303995 ~ 51315870 (-)
G1304430 NA non-coding upstream 31831 51312011 ~ 51312442 (-)
G1304464 NA non-coding upstream 99280 51379460 ~ 51382461 (-)
G1304539 NA non-coding upstream 238077 51518257 ~ 51519053 (-)
G1304570 NA non-coding upstream 291197 51571377 ~ 51572035 (-)
LOC110490244 LOC106609225 other downstream 973824 50290050 ~ 50301082 (-)
G1302602 NA other downstream 1610535 49663951 ~ 49664296 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 2435680 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 3570793 47584674 ~ 47707520 (-)
G1304896 LOC107662719 other upstream 641315 51921495 ~ 51922528 (-)
G1304988 NA other upstream 709531 51989711 ~ 51990173 (-)
LOC110490288 LOC106609184 other upstream 1526803 52630838 ~ 52809711 (-)
G1306232 LOC106576137 other upstream 1774669 53054849 ~ 53062280 (-)

Expression


Co-expression Network