LOC110490268 (LOC106576083)


Basic Information

Item Value
gene id LOC110490268
gene name LOC106576083
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51280478 ~ 51287146 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563564.2
GCAATCTCGAGATGGGTGGTTGTCATGGATACCTGGGTCACATGCGTGGGTTTCCTGAAGCCAGCAGCAAAatgatgctagctagctagcgttttTTTACTGCCATTTTCATTCTGGTTTCATCAAAAGGCGGTAGCTAAATTAGCAAGCTATAGCTAGCTACAGATGAACAGAAATCGAGGATGGGTGTAACGTCAACAACATTTGTAACAAAAGGCTGTGTCTGGAATTATTTTTCAAGTGAGCTGTCAACCCGTGCAAGCCTGAGCTGGAATATTATTTGTAGTCATTTTATTTCCCTGACTCGTAATAAAACCGATTAGAAATGAGTATTGAAATCCCAGACGGACTGACGGAGCTGCTGCAAAGCTTTACAGTGGAAGTGTTGAGGAATCAGCCAGGAGACCTTCTGGACTTTGCCTTGCAGTATTTCATCCAACTGAAGGAGAATCGGAGAGGATCCGCCTTTGACAATGCCCGAGATTCAGCTAACGGTCGACCTGGTGGTAATGTTAGCAGTGGAAGATCGGTCAATTTTGCCGAGGAGGCAATGCAAATCGATTCGGAAAATGAagaagaagatgatgatgatgaggaggaggaattCGTAGCTCCGGTGATCAACAGATTCTTGAGAAGATCTTCAGTGTGTGCTGAAGCATTCAACCctgatgatgaggaagaggaggacaaagAGCCCAGGATCACCCATCCTAAAACCGACGAGCAGAGGCACAGACTACAGGAGGCCTGCAAAGACATTCTGCTGTTCAAAAACCTAGACCCGGAGCAGATGTCCCAGGTACTGGATGCAATGTTTGAGatgtcagtggaggctggcgAACACATTATAGACCAGGATGACGATGGGGATAACTTCTATGTTATCGAAAGAGGGACCTTTGACATCCTGATGAAATCAGACAAGGTGGAGCGTGTGGTGGGTTCCTATGACAACCAGGGCAGTTTTGGCGAATTGGCCCTGATGTACAACACCCCCAGGGCTGCCACCATCATCGCCACCTCTGTGGGAGCCCTCTGGTGCATGGACCGACTGATGTTCAGGAGGATCATAGTAAAGAACAACCACAAGAAGAGGAAGATGTACGAGGCTTTCATCGAGTCTCTGCCCCTGCTCACATCTTTACAGGTCTCTGAGAGGATGTGTGTGGTGGATGTTCTATCCTCCAAGACCTACAGTGACGGAGAACAGATTATCGCTCAGAGGGCCACTGCTAACTGCTTCTACATAGTAGAGTCTGGCCAAGTGCGAATAACCATGAATATGAGCAAGttgagaaaggaggagggagaaggggtggaagaggaggtggagattGCCATGTGCACCAGGGGACAGTACTTTGGAGAGCTGGCTCTGGTCACCAACAAGCCCCGGGCTGCTTCAGCGTACGCTGTAGGAAACGTCAAGTGTCTAGTGATGGACGTGCAGGCGTTTGAGCGTCTGCTGGGCCCCTGCATGGACATCATGAAGAGGAACATCGTCGACTACGACGAGCAGCTGGCCGCGCTGTTCGGACGTAACGCCGACATTCACGACAACGACGCGGCGTGATAGAGTACACTCGGCATAGACAGCTGAGACCTGATGGTTTTTGTAACAAGGGACTCCGAGACTCTCCTGAGGGGCCAAATACCCCTGGTACTGATCTGCTTCAACACACATCACCCACTGTGTTTATATTACAGTATTAGCAATCAGACCATTTTTAGATAGAGGTTTGTTCATACTGCAAACTCAGACTTCATATGAGATGAATCCCATTTGTGTAGTTTTAGTATTTTGTATGAAACACGAACATAGTGGTGTTTGTTAATGACCTTCAGATTCATTCCTGGCCTTATATCCAAATGGTACATATGAAGACACACTTCTATCAGGTTTGTCTAATAGATAAACCACGTTATGGCTTTTGATTCAAAATGAAACGTCGGGGTCATCTATTGTCCAGGCATTTAACCTTCCCTCACAGAAAACCACTTTACAAAGATGTcgctatttttttgttgttgcctataAATGTTACCACCAAGCACGTGAATTCataatggaataagattgcacttGTTGTTTCTTATCTCCCAGATGTGTTAGCGACTTTTTAGAGTAACATTTTAGTCTGGACAATTTATGTCATATGAAAacaacagtgtttcccaaacaaAAAAGCAACATAGAGCTAGCTGGTAGTGGTATATTTCAGTGTACCTTTTATTTGCAGTTCTCAACTTTATTTAAAAATGCATATTGTACTTGAAGTTTGTAATAGTGTTATAGTCCTGAGTTAAGCATTTATGATCTAGTTGAAGAGCATTAGTAGCATATCATTTGTTAAACTGAGGTGTATTGTTTTTGTTAAATCAAATGGGACATTGACACAACTTGGTGCTCAGTAGCTAAAAGGCAGTATTTCCTGACAAATCCAAATGTGAAGTTGGTCTACACAGAACCAATTCATGAATGGACTGTGTTGCTTTACTTCATTTTTTTTGTACTAGTTATTATCTTATAAGCTGTGGATAAGTTGTCAGAGGATGTTTCTTTGACAGTGTCTTTTCCCATGTGATTTCTGATGTATCAGTGGGTGTTTTGGAGAGCTGTTTTTGAGATCAATATTTCCAACTGGTGAAACATGGGGTGTCTTCACAAGGGAAATACCAGATAGGGAAATTCTCTTAGTGTTTTGCATATTGCTGCTAGACCTACGTTTGGTACATAGTTTCTTTGGTACAGTctgttaaaaaaaagaaaagaaagtaTTTGTCTTTGTCATTCACGCACTGCTCTCCTTAATAGATTAGTACCGTAATTTGCCTTGTTGAACCAGAGATTTCATAAGTGTCATTATTTTAACCTGCCAATACTTTGTCAGATAGATGTTCAACCTTCAATGCAAGTGAATCTCTGAACCAGTTTTATCAGTCAACTGAAAGGATTTATCTTGCCTACCTCTGCACATACTTACCTTTGCCAACAACGGGTGTCTGCCATTCCGTGTGTCATGGTGTTAATGTCAGTGTTCTGTGTGTAAAAACAGATTTGTTttcatttaatattttttttaagggTCCACTCCGGCACTTGCTTTGCAGTTTCCCATTTTTCTTGtaatgttgttacaattacacctaATTTCCTGAGTATTTTCAGCATCTTAACTGTTATTTGAATTTCCATTGCAATAAACTTGTGTTTTGTATAAATAA

Function

NR:

description
cAMP-dependent protein kinase type II-beta regulatory subunit-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563564.2 True 3228 mRNA 0.43 11 51280478 51287146

Neighbor

gene id symbol gene type direction distance location
LOC110490265 LOC106576097 coding downstream 298 51274831 ~ 51280180 (-)
LOC110490264 LOC106576080 coding downstream 74551 51199223 ~ 51205927 (-)
LOC110490262 LOC106576078 coding downstream 115282 51152066 ~ 51165196 (-)
c15h12orf56 cssa17h12orf56 coding downstream 131235 51126735 ~ 51149243 (-)
LOC110490261 LOC106609216 coding downstream 153843 51124030 ~ 51126635 (-)
LOC110490266 LOC106609208 coding upstream 2465 51289611 ~ 51301497 (-)
LOC110490744 LOC106576129 coding upstream 498342 51785488 ~ 51793354 (-)
LOC118936382 NA coding upstream 529962 51817108 ~ 51819851 (-)
LOC110490745 LOC106576126 coding upstream 840841 52127987 ~ 52131038 (-)
LOC110490277 LOC106576111 coding upstream 892273 52179419 ~ 52183904 (-)
G1304413 NA non-coding downstream 6048 51273438 ~ 51274430 (-)
G1304355 NA non-coding downstream 105467 51174772 ~ 51175011 (-)
G1304352 NA non-coding downstream 110556 51169334 ~ 51169922 (-)
G1304342 NA non-coding downstream 128762 51151516 ~ 51151716 (-)
G1304302 NA non-coding downstream 224020 51051493 ~ 51056458 (-)
G1304426 LOC100380855 non-coding upstream 16849 51303995 ~ 51315870 (-)
G1304430 NA non-coding upstream 24865 51312011 ~ 51312442 (-)
G1304464 NA non-coding upstream 92314 51379460 ~ 51382461 (-)
G1304539 NA non-coding upstream 231111 51518257 ~ 51519053 (-)
G1304570 NA non-coding upstream 284231 51571377 ~ 51572035 (-)
LOC110490244 LOC106609225 other downstream 979471 50290050 ~ 50301082 (-)
G1302602 NA other downstream 1616182 49663951 ~ 49664296 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 2441327 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 3576440 47584674 ~ 47707520 (-)
G1304896 LOC107662719 other upstream 634349 51921495 ~ 51922528 (-)
G1304988 NA other upstream 702565 51989711 ~ 51990173 (-)
LOC110490288 LOC106609184 other upstream 1519837 52630838 ~ 52809711 (-)
G1306232 LOC106576137 other upstream 1767703 53054849 ~ 53062280 (-)

Expression


Co-expression Network