LOC110490744 (LOC106576129)


Basic Information

Item Value
gene id LOC110490744
gene name LOC106576129
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51785488 ~ 51793354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564200.2
ACCATAGACATGACACTTCTCCTGCTCCTACTCTCAGCCGTGACCCCAGGACATCTGTGGGAACGTCTCTTCCTCAAGATTGCCACGACAAAGATGTGACTCTCTCCTGTGTCTGCTGCACAGCCGCATTCAGCCGCCTCAAACAGTTGCATCTCATTAAAAGGAGTTTAAAATGGACAGAAGCACAAGACTTCTGCCGGGAGAACTACACTGATCTTGTCACTTTGTACAATCGGGAGGAATCTGAGCAGCTGATACAGTTAAAGCTATCTAATAACAGCTCTAAAGCCTGGATAGGTCTCCATCGCACAGAGCACAGTCTGAAGTGGTCCAATGGAGACGCTGTTAATGACACTGCATGGTCACCACTTCCAAGCCCGTACACAGAGCCAACGTGTGCAGCCATACTCAAAGATAATACAACATGGGAGAATTGTAAAGAGCAGAAATACTTCATGTGTTACAGAGAAGGGTCTGGTGATTCCTTCCTGATTGAACAGAACATGACCTGGTATGAGGCTCAGAGTTACTGCAGAGAGAACTACACTGACCTGGTCAGCATCAGGAACGAGGGACAGAAGGAGGAAGTGAAGAACAAAGGAATGAACAGCACCATTCCTTACTGGATCGGCCTGCTGTATGATGACTGGGAGTGGTCTGATGGAGGGAGATCTGCCTACAGAGACTGGTCAACATTGTATGTTCCAAATGTATACTATCCTATAGCAGAACAGAATCACACTGTTCTTAATCAGACTGACAAAACTATACTCACAGTGGGAAATGGAGGTTATGAAGACCATACACTCTGCTCTGAAGTTCGCATCCACAATATTGGTGAAAGAAAGTCTTGGGAACAGGCTCTGGACTACTGCAAGAATAACTACCATGGACTGCTGCGTACTGAGACAGAAGAAGACCTGGAGGTGATCAAGCAGAAGTTTAATGGGACTGGTTTTACTGGTCCTGTGTGGGTGGGTCTGAGACAGAGCCGTCTCTTTGGGTTCTGGGTCTGGTCCAATGGGCTGCCAGTGGGGTGGAGTAactgggagggagacagacagcctGAACAGCCTCTGTCCAACCATTGTGGTGCCATGGCAATGGAGGAGGGATACAAGTGGAGTGATCAGGATTGTCTGTCCAAACTCTACTTTATTTGTGAAGgataatttacatacattttcccatTTAATTAACTGTCTTTACCATTCCTCACATTTTGATTGATATGTGTTTTTTCTTTAGGTAATTGCTGATTGAAATCACATTTGCAAATCTGTTTTTATGTTTTAACCTTTCAGCATGCAATGCAATGTACAATACACCGGTATAACTTATCAAAAATCTTTGAGTAAAATTGTGTGAGATTTcagatatttaaaaaatgtacacaATAAAATGTAGATAATTATGTCATGTGATTAAAATATTATGTTATCTTGTCTTAACATGTTTGCCATTAAGCAAACTCGTTTATCCTAGGTTTACCCATAGTCATCCCTATTGTAACTGTGGGTTACTGGAATTAATACTCTAGATAGCCTAAATACAATTATATTTAATTAATAGTATCATGCATGTTAACGATGACTAAGGAAATAAAAATGATAGTAAAGTAATATATTGTACATTATGGATATTGTGGGAATAATGGAAATACTCCCAATTTCTGTTCACAACttgacaaaaataaacaaaacataaaat
>TU1488526
ACCATCATACTTTACACTGCCAAGACCGTATCATTCTCTACACAGCCCACAGCAGACATGACACTTCTCCACTGTCTCTCCTGACCCTGCTGCCACCATAGACATGACACTTCTCCTGCTCCTACTCTCAGCCGGTGTCTGCTGCACAGCCGCATTCAGCCGCCTCAAACAGTTGCATCTCATTAAAAGGAGTTTAAAATGGACAGAAGCACAAGACTTCTGCCGGGAGAACTACACTGATCTTGTCACTTTGTACAATCGGGAGGAATCTGAGCAGCTGATACAGTTAAAGCTATCTAATAACAGCTCTAAAGCCTGGATAGGTCTCCATCGCACAGAGCACAGTCTGAAGTGGTCCAATGGAGACGCTGTTAATGACACTGCATGGTCACCACTTCCAAGCCCGTACACAGAGCCAACGTGTGCAGCCATACTCAAAGATAATACAACATGGGAGAATTGTAAAGAGCAGAAATACTTCATGTGTTACAGAGAAGGGTCTGGTGATTCCTTCCTGATTGAACAGAACATGACCTGGTATGAGGCTCAGAGTTACTGCAGAGAGAACTACACTGACCTGGTCAGCATCAGGAACGAGGGACAGAAGGAGGAAGTGAAGAACAAAGGAATGAACAGCACCATTCCTTACTGGATCGGCCTGCTGTATGATGACTGGGAGTGGTCTGATGGAGGGAGATCTGCCTACAGAGACTGGTCAACATTGTATGTTCCAAATGTATACTATCCTATAGCAGAACAGAATCACACTGTTCTTAATCAGACTGACAAAACTATACTCACAGTGGGAAATGGAGGTTATGAAGACCATACACTCTGCTCTGAAGGTAAGTTGTCAAAGAGGAACATAGTCAAACTGCTTCTTATTTGTATGAAAGGTTGTTAC
>TU1488527
AAGCACAAGACTTCTGCCGGGAGAACTACACTGATCTTGTCACTTTGTACAATCGGGAGGAATCTGAGCAGCTGATACAGTTAAAGCTATCTAATAACAGCTCTAAAGCCTGGATAGGTCTCCATCGCACAGAGCACAGTCTGAAGTGGTCCAATGGAGACGCTGTTAATGACACTGCATGGTCACCACTTCCAAGCCCGTACACAGAGCCAACGTGTGCAGCCATACTCAAAGATAATACAACATGGGAGAATTGTAAAGAGCAGAAATACTTCATGTGTTACAGAGAAGGGTCTGGTGATTCCTTCCTGATTGAACAGAACATGACCTGGTATGAGGCTCAGAGTTACTGCAGAGAGAACTACACTGACCTGGTCAGCATCAGGAACGAGGGACAGAAGGAGGAAGTGAAGAACAAAGGAATGAACAGCACCATTCCTTACTGGATCGGCCTGCTGTATGATGACTGGGAGTGGTCTGATGGAGGGAGATCTGCCTACAGAGACTGGTCAACATTGTATGTTCCAAATGTATACTATCCTATAGCAGAACAGAATCACACTGTTCTTAATCAGACTGACAAAACTATACTCACAGTGGGAAATGGAGGTTATGAAGACCATACACTCTGCTCTGAAGGTAAGTTGTCAAAGAGGAACATAGTCAAACTGCTTCTTATTTGTATGAAAGGTTGTTAC
>TU1488519
ACCATCATACTTTACACTGCCAAGACCGTATCATTCTCTACACAGCCCACAGCAGACATGACacttctcccctgtctctcctgaccCTGCTGCCACCATAGACATGACACTTCTCCACTGTCTCTCCTGACCCTGCTGCCACCATAGACATGACACTTCTCCTGCTCCTACTCTCAGCCGGTGTCTGCTGCACAGCCGCATTCAGCCGCCTCAAACAGTTGCATCTCATTAAAAGGAGTTTAAAATGGACAGAAGCACAAGACTTCTGCCGGGAGAACTACACTGATCTTGTCACTTTGTACAATCGGGAGGAATCTGAGCAGCTGATACAGTTAAAGCTATCTAATAACAGCTCTAAAGCCTGGATAGGTCTCCATCGCACAGAGCACAGTCTGAAGTGGTCCAATGGAGACGCTGTTAATGACACTGCATGGTCACCACTTCCAAGCCCGTACACAGAGCCAACGTGTGCAGCCATACTCAAAGATAATACAACATGGGAGAATTGGTCTGGTGATTCCTTCCTGATTGAACAGAACATGACCTGGTATGAGGCTCAGAGTTACTGCAGAGAGAACTACACTGACCTGGTCAGCATCAGGAACGAGGGACAGAAGGAGGAAGTGAAGAACAAAGGAATGAACAGCACCATTCCTTACTGGATCGGCCTGCTGTATGATGACTGGGAGTGGTCTGATGGAGGGAGATCTGCCTACAGAGACTGGTCAACATTGTATGTTCCAAATGTATACTATCCTATAGCAGAACAGAATCACACTGTTCTTAATCAGACTGACAAAACTATACTCACAGTGGGAAATGGAGGTTATGAAGACCATACACTCTGC
>TU1488525
ACCATCATACTTTACACTGCCAAGACCGTATCATTCTCTACACAGCCCACAGCAGACATGACACTTCTCCACTGTCTCTCCTGACCCTGCTGCCACCATAGACATGACACTTCTCCTGCTCCTACTCTCAGCCGGTGTCTGCTGCACAGCCGCATTCAGCCGCCTCAAACAGTTGCATCTCATTAAAAGGAGTTTAAAATGGACAGAAGCACAAGACTTCTGCCGGGAGAACTACACTGATCTTGTCACTTTGTACAATCGGGAGGAATCTGAGCAGCTGATACAGTTAAAGCTATCTAATAACAGCTCTAAAGCCTGGATAGGTCTCCATCGCACAGAGCACAGTCTGAAGTGGTCCAATGGAGACGCTGTTAATGACACTGCATGGTCACCACTTCCAAGCCCGTACACAGAGCCAACGTGTGCAGCCATACTCAAAGATAATACAACATGGGAGAATTGTAAAGAGCAGAAATACTTCATGTGTTACAGAGAAGGGTCTGGTGATTCCTTCCTGATTGAACAGAACATGACCTGGTATGAGGCTCAGAGTTACTGCAGAGAGAACTACACTGACCTGGTCAGCATCAGGAACGAGGGACAGAAGGAGGAAGTGAAGAACAAAGGAATGAACAGCACCATTCCTTACTGGATCGGCCTGCTGTATGATGACTGGGAGTGGTCTGATGGAGGGAGATCTGCCTACAGAGACTGGTCAACATTGTATGTTCCAAATGTATACTATCCTATAGCAGAACAGAATCACACTGTTCTTAATCAGACTGACAAAACTATACTCACAGTGGGAAATGGAGGTTATGAAGACCATACACTCTGC
>TU1488529
AAGCACAAGACTTCTGCCGGGAGAACTACACTGATCTTGTCACTTTGTACAATCGGGAGGAATCTGAGCAGCTGATACAGTTAAAGCTATCTAATAACAGCTCTAAAGCCTGGATAGGTCTCCATCGCACAGAGCACAGTCTGAAGTGGTCCAATGGAGACGCTGTTAATGACACTGCATGGTCACCACTTCCAAGCCCGTACACAGAGCCAACGTGTGCAGCCATACTCAAAGATAATACAACATGGGAGAATTGTAAAGAGCAGAAATACTTCATGTGTTACAGAGAAGGGTCTGGTGATTCCTTCCTGATTGAACAGAACATGACCTGGTATGAGGCTCAGAGTTACTGCAGAGAGAACTACACTGACCTGGTCAGCATCAGGAACGAGGGACAGAAGGAGGAAGTGAAGAACAAAGGAATGAACAGCACCATTCCTTACTGGATCGGCCTGCTGTATGATGACTGGGAGTGGTCTGATGGAGGGAGATCTGCCTACAGAGACTGGTCAACATTGTATGTTCCAAATGTATACTATCCTATAGCAGAACAGAATCACACTGTTCTTAATCAGACTGACAAAACTATACTCACAGTGGGAAATGGAGGTTATGAAGACCATACACTCTGC
>TU1488532
ACCATCATACTTTACACTGCCAAGACCGTATCATTCTCTACACAGCCCACAGCAGACATGACacttctcccctgtctctcctgaccCTGCTGCCACCATAGACATGACACTTCTCCACTGTCTCTCCTGACCCTGCTGCCACCATAGACATGACACTTCTCCTGCTCCTACTCTCAGCCGTGACCCCAGGACATCTGTGGGAACGTCTCTTCCTCAAGATTGCCACGACAAAGATGTGACTCTCTCCTGTGAGAGATACATCCATGCAAACAATGTCATGAATCCTCAAGATGGGCCTAAGGAGCCAGCAAATTGCCTTTTGCGAGTGTCGCATTCTCTCATTTTTCCACTACAGTAGCATTTACAtttttacagtataatacaggctgtatatacagtgccttgcgaaagtattcggcccccttgaactttgtgaccttttgccacatttcaggcttcaaacataaagatataaaac

Function

NR:

description
macrophage mannose receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564200.2 False 1710 mRNA 0.41 5 51785488 51792845
TU1488526 False 904 TUCP 0.46 4 51786631 51793354
TU1488527 False 698 TUCP 0.45 2 51786631 51787491
TU1488519 False 848 TUCP 0.48 4 51786697 51793354
TU1488525 False 838 TUCP 0.47 4 51786697 51793354
TU1488529 False 632 TUCP 0.46 2 51786697 51787491
TU1488532 True 478 lncRNA 0.47 3 51790891 51793354

Neighbor

gene id symbol gene type direction distance location
LOC110490266 LOC106609208 coding downstream 483991 51289611 ~ 51301497 (-)
LOC110490268 LOC106576083 coding downstream 498342 51280478 ~ 51287146 (-)
LOC110490265 LOC106576097 coding downstream 505308 51274831 ~ 51280180 (-)
LOC110490264 LOC106576080 coding downstream 579561 51199223 ~ 51205927 (-)
LOC110490262 LOC106576078 coding downstream 620292 51152066 ~ 51165196 (-)
LOC118936382 NA coding upstream 24263 51817108 ~ 51819851 (-)
LOC110490745 LOC106576126 coding upstream 335142 52127987 ~ 52131038 (-)
LOC110490277 LOC106576111 coding upstream 386574 52179419 ~ 52183904 (-)
LOC110490278 LOC106576113 coding upstream 400217 52193062 ~ 52203096 (-)
LOC118938894 cog5 coding upstream 415174 52208019 ~ 52278865 (-)
G1304636 NA non-coding downstream 53590 51731623 ~ 51731898 (-)
G1304624 NA non-coding downstream 71357 51713786 ~ 51714131 (-)
G1304577 NA non-coding downstream 134334 51583953 ~ 51651154 (-)
G1304580 NA non-coding downstream 135011 51629710 ~ 51650477 (-)
G1304583 NA non-coding downstream 137771 51636735 ~ 51647717 (-)
G1304884 NA non-coding upstream 119687 51912532 ~ 51912858 (-)
G1304887 NA non-coding upstream 120848 51913693 ~ 51915280 (-)
G1304923 NA non-coding upstream 150667 51943512 ~ 51943738 (-)
G1304938 NA non-coding upstream 159992 51952837 ~ 51953104 (-)
G1304945 NA non-coding upstream 164757 51957602 ~ 51957854 (-)
LOC110490244 LOC106609225 other downstream 1484481 50290050 ~ 50301082 (-)
G1302602 NA other downstream 2121192 49663951 ~ 49664296 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 2946337 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 4081450 47584674 ~ 47707520 (-)
G1304896 LOC107662719 other upstream 128650 51921495 ~ 51922528 (-)
G1304988 NA other upstream 196866 51989711 ~ 51990173 (-)
LOC110490288 LOC106609184 other upstream 1014138 52630838 ~ 52809711 (-)
G1306232 LOC106576137 other upstream 1262004 53054849 ~ 53062280 (-)
efcab6 efcab6 other upstream 1963670 53756479 ~ 53786697 (-)
G1304584 NA non-coding downstream 161419 51628232 ~ 51629472 (-)

Expression


Co-expression Network