LOC110490274 (LOC106576108)


Basic Information

Item Value
gene id LOC110490274
gene name LOC106576108
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52064879 ~ 52074544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563570.2
AACCATGGAGAAAGAGGTGGTACGCCGATATTGCTATGGTAATTATGATGATAATATATTAATCGAGTGCGCGTCATCGGGCGTGGTTGGCTGCCAGCGGCGGTAGTCAGGAGGCAGGATCTGGTGGATGCGGATTGACAGATCAGGGTTAGCCGCCAGGGGAGTCCATTTTCCTTCACAGTCCTCCCCGAGACACCCAGCTCACCTCCGTGCTCCACGGAGCGGACAGAGAGAACGAGCCAGAGCCgcgcctctcttctctctcagctcGCAGCTGTGTAACAAACACACAGCAGCACACAGCAGCAGCGCCGCACAGTCTGCGAGACTCTCAGCCCGACCCAACCACAGCCAGTGCAGCCTGTTCGGCTCACAAGGGAAAGTCCGGTGATCTGCTGTTTATGGAGATGAGATGCATGTGACCATGTTGTCGCTGTAATATGAGTTTGCTAGCGGCATGTGGTGCCATGAGAACCTTGCAGGGATATCTAGTTCGGTAAGGCAAGGCGCTTTCTACTTGACCAAATACATCTCACAGAAGGTGGCGGCTGGCTtgcacagaacaacagcaaggcGGAGACCAAACCCAGTGCACTGAATTTAGATATGAGCTAAAAGTTTACCAACATTAAAATATGTTTGGGATCTACATTGAGCGTTTAAGTTTAGTGTGATTCTTGTCATTATGGGTGTAGACTGAACAGGAGCGTATTCTCTTCACCGAGATAACGATGGCTTTCTGAGGAGGATATCTCTATCTGCGCTATGATCTGGACCATGCGGACTCTGATGCTGAGGacgctgtgtgtgttgttggggAATGCACATATCTTGTCTCTCAGAAATAATGGCTACATGCGAACAAGAGAAACAGCGTTGGGTTATTATGGGTTTAACGCCACAGCAACACACAGGACCGCTCACACAGCCATCGGAAAAGGTCCCGAAAACACAGTTTACAACAGCACTCGCTCTGGGGGACACGCTACAGGTACGTCCTACTCCAAACAGAATATTCAAACGTGGATGGAAAAGATTCATTCTACTAATGTGAGAAGGACGCGCGTAATTACGGATGAAACAAAACATAGGCATGTCGGATTAAAACAACACCAGTCCAACAGAACACTAACGCTGGGGGATTACTCTGCCACCCCACACAGGGACATGGTACGCCGCCACAAGAGGAGAAAGTTGAATAGGGAGATTGGCGCAGCCGCTGCCATGGGTACGGCAGGTGGATACAATATCACTAAGTCTCCAGCAATGGGCCAGCAGCGCGGGGGACAACTGGATAGCGACAGACGCAAGAGAGGCACAAAAGACGAGCAGAAGAAGGCGtttaagagggagagggggagaaaagtgAACAAAAGCTCAATGGCTTTATCTCAGGCACACAGCGCAGTGGGCGGGCtggacccccctctctctccatgggaACCAATACCCAAGCCCCTAGCTCTCACCTCTACCGACCTACCCCTCGACTTCTTCACCAGGAAGAACGAGATGTTTACTTACCGGGAGGAAAACCCGTGGGATGCCACTCCAATGACACCTCCCAACACGGCAGATTTTGGAAGTGAAATCAAAAACCCATTTTACCCAGTGACAAGTGAAACCTTTGGAGCTTATGCTATCATGGGCGTTTCTGCCATAATTTTCCTCGCTGGGATAGCAGGGAACATAGCCATACTGTGCATCGTATGTCAGAACTACTATATGAAGAGCATCTCCAACTCTCTCATAGCTAACCTGGCCATCTGGGATTTTGTAGTCGTCttcttttgcctgccccttgtcATTTTCCACGAATTGACTAAGTCCTGGCTACTGGGAGATTTCACCTGTAAAATCGTGCCATATTTAGAgGTGGCATCTCTAGGTGTGACCACGTTCACCCTGTGTGCTCTGTGCATTGACCGGTTCCGCGCAGCCACCAATGTCCAGATGTATTACGAGATGATCGAGAACTGCACCTCCACTACAGCCAAGCTCGCCGTCATCTGGATCGGAGCTCTCCTATTGGCTCTCCCTGAGCTCCTGATCCGCCAGCTGGTCACCGAGGACCCCGCCCTACCAGATGACCTCCCAACGGAGCGCTGTGTGGTGCGCATCTCGACATCGCTCCCAGATACACTCTACATCCTGGGTCTAACCTACGAGGGCGCGCGGCTCTGGTGGTGCTTCGGCTGTTACTTCTGCCTCCCTACGCTCTTCACCATCGGCTGTTCCCTCGTCACCGCCCGCAAGATCCGCCGCGCCGAGCAGGCCTGCGTCCGCGGCAACAAGAAGCAGATACGCCTAGAAAGCCAGATGAACTGTACCGTCGTGGCGCTCGCCATCGTCTACGGCGCCTGCGTGGTCCCGGAGAACATCTGTAACATCGTGTCGGCATACATGGCGGCGGGCGTGCCGGAGCGGACCATGGCGGTCTTACACCTCCTGTCACAGCTGTTGTTGTTCTGCCGGGCGGCAGTGACGCCTGTGTTGCTCCTGTTATTATGTCGTCCGCTAGGCAGAGCCTTCCTggactgttgttgttgctgctgctgtaacCATGCCCACTCCTCAGGCACGGCTAGTGATGATAATGAGCATGAGTGTACCACAGAGCTGGAGCTGTCGCCCTTCAGCACCATACGCAGAGAGCTCAGCAACTACACTCCCGCAGGGTCCAACTGTtaaaaccacacaactactgttaaaggtccagtgcagtcaaaaacatgatttttcagtgttttatattcagtgtatatttccacactatgaggttgatataatactgtgaaattgtgaaaatgatgataatgcccctTTAGTATAAGATCCGTTTGAGAAGACCGCCTGAAATTcatcctgttttggtgggatggagttttggcctgcctggtgacaccaccaggtggtaaattagttagaCCAATTAGAAAGAGAGTTACAAACGTCTCTGTCAAAAACGGCAAGTTTTCAgtctttcccctccccactcagaccattaACCAGACAATCTGAGCTAAATTCTTGCTGGAGAAATTGCTATTTTttaagaagctgtttttcattttTGACAAGTTACTTAATTATTACCCAAAAAATGATATGatgttgagataaaaatggctgcattggaacTTTAATGACTACACAGCTACTCACCTGCAGGACTATACAAACATACTAGTACACAGAACTGTACAACTTCACACCTGCAGAGTCAAACTGCTAAGACTGCACACCTTTGCAACTACAGAACTATACAACATTTCACAAGCAGAATCAAACTGCTTGGATTACATACCTGTACACCAACGGTACAAAACTACAGTAAACTACAACACAGTTAGCTACACAACTGACAAACTGGGTGCTAGGGCCACACAACTCCTGTACAGCATACTATTACAcaactactgtatataactacaCACTAGCAGGGGAAAAGTGTCAGGACTACACACTATACATCCGCAGGGAGCAAGTAACATCTGAACAGCCATACTGCCGAGACAACTGCACTACAACTCCCAATACACATACTGTGCTCCAACCCAGTACACAAACCCAGTGTTCTGAACTGGGCCCAGACATGAATGGACAAAGCCAGACACTCGAGACCAGACTACGCTGGACTGTGTTGAGCTGAAATGGACTCAGTGGAGTGGACTAGGCGTGGCTGGGCTGGAGTGGACTCCGAATAGTTGACTGGAGTGGACTGGGCTAGAACGGACATAGTCACGTCACCCCTCACTCAAACTCTGCACTCACGATTCAGTTCACACACACGCCTTACTCGCACACTggactgtacatactgtatactacacacTCTATCACTCTAGTGAAGGAAAGCTATATAGGGAAGGAATGAAGGAAGCGTATAGAGGAGGAATACAGGGACATTACAAGCATATTGTGATTGTTTTCTTTTAATGCACATTAATATTACTGTAATCGTCGTGGTTGATTTCTGCATACAACTCTGCACTGCCAAACACCTTTCCTCGCTTTCACACTCTGTCGTGCCCTCCTGTTAGTGTCAGAGTCAgggcctctctgtctctgtgtcttttcTGACAGTAACTTGTTCTAAATGGCCGAGTGTACAGTGTTGTGATTCAAACTCTTGATGAAGTCGGTGCTTCTTGTCGACTTGTTTAATTGAACTTTGTGAGTATCTTGTTCACTCTGTCTGTATTTGATAGCAGAAGATGTAAGCGCACACAGTCATCAGTCTAGTTTCTGGTTTCTAGATAGGTTTTTATATAGCCAAAAAAACTGTccctttgattaaaaaaaataacttgATCTTGACTGCAGGATTGCAGCtctgtaaaaaaaa

Function

NR:

description
prosaposin receptor GPR37-like

GO: NA

KEGG:

id description
K04243 GPR37; prosaposin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563570.2 True 4348 mRNA 0.49 2 52064879 52074544

Neighbor

gene id symbol gene type direction distance location
LOC110490742 LOC106609203 coding upstream 334345 51411245 ~ 51730534 (+)
LOC110490271 LOC106576088 coding upstream 660478 51386269 ~ 51404401 (+)
atxn7l1 LOC106576087 coding upstream 682300 51351361 ~ 51382579 (+)
LOC118938813 NA coding upstream 698566 51364012 ~ 51366313 (+)
LOC110490270 LOC106576086 coding upstream 715033 51338069 ~ 51349846 (+)
LOC110490275 LOC106576109 coding downstream 48042 52122586 ~ 52126305 (+)
LOC110490276 LOC106576110 coding downstream 79611 52154155 ~ 52176143 (+)
LOC110490280 LOC106609195 coding downstream 130281 52204825 ~ 52207709 (+)
LOC110490279 LOC106576114 coding downstream 245078 52319622 ~ 52327848 (+)
LOC110490283 dus4l coding downstream 273580 52348124 ~ 52366962 (+)
G1305026 NA non-coding upstream 22114 52042536 ~ 52042765 (+)
G1304932 NA non-coding upstream 115090 51949589 ~ 51949789 (+)
G1304931 NA non-coding upstream 116399 51948232 ~ 51948480 (+)
G1304895 LOC107662719 non-coding upstream 142892 51921348 ~ 51921987 (+)
G1304885 NA non-coding upstream 150982 51913650 ~ 51913897 (+)
G1305145 LOC106609192 non-coding downstream 138982 52213526 ~ 52238349 (+)
G1305176 NA non-coding downstream 227460 52302004 ~ 52302222 (+)
G1305183 NA non-coding downstream 238139 52312683 ~ 52312899 (+)
G1305175 NA non-coding downstream 254182 52328726 ~ 52329622 (+)
G1305193 NA non-coding downstream 259100 52333644 ~ 52334232 (+)
G1304886 NA other upstream 149869 51914597 ~ 51915010 (+)
G1304083 NA other upstream 411879 51584754 ~ 51653000 (+)
G1303950 LOC106576084 other upstream 765118 51299403 ~ 51299761 (+)
G1305302 NA other downstream 438085 52512629 ~ 52513050 (+)
sox5 LOC106576150 other downstream 1278073 53352462 ~ 53471763 (+)
G1306708 NA other downstream 1505997 53580541 ~ 53583352 (+)
LOC110490314 LOC106576157 other downstream 1814684 53875911 ~ 53890829 (+)
LOC110490339 LOC106576184 other downstream 3083462 55157706 ~ 55170847 (+)

Expression


Co-expression Network