LOC110490275 (LOC106576109)


Basic Information

Item Value
gene id LOC110490275
gene name LOC106576109
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52122586 ~ 52126305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563571.2
tgttgttcacaagCTTATCTGCCCTCTCGTTGACTAGAATTGTCCCATCTGATCTCGCCTCCTCCCACCTGCCTTCCacctttgaggacatgtatttcaaTTGTTAAAGCGGTCACTCGACTATCTTATCAATATAATAGAACATCTTTGCTGTGGCACAGGCGCTGTCAGGTGCAAAGCCGCTAACGACACCGCGGCAGCTCGGTTAAAGTACAGAATGTGCCAGGAACAAAGAACAAGAGCTGCTCTCTGATTCTctccgaggagagagagagatcagccaTGGCCAGCTGTCGGAGAGAGAGCCCACGGAGCCGGGCAGGACAGGCAAGTGGCAGTCTGAGAGCAGCGAGGAAGCCCGGGCAGAGAGATCCTTCCAGCGAGTTAGGGGACGCGGGCGAATCAATGACAGAGCTACCACAATGGTTGCGGTTTTATTTCTATGGGATGCACGGTATCACTTTGGATATCCTCCTGTCGTCGGCACAGGGGCTTTTGGCTGACAGCGACCCCAAACTGTTCGGCTTTTCCTCCCCGTACCTCTGCATCATGCACTCGGTGACCCATTTTTTGCTGGAAAAAATATATTCGCAAAAGAAGTGCTTTCAAGGACGCACAGTCATTTTTCACCTTGTTTTTTATCCCTCTGTGTACATTGGGTTGCAGATCCTGATTGGGAATATAAACACGCTGACCGAGCACGTTAGAATAGTCTCTGCCACTCATCTCGTCGTTCACTACCTACTGGCACTGTACTTCACCCAAGTTTTCCACAAGGGGCTTGAGCGGCTGCGCTACCACTGCCCCGGGAAACGGACCATGTCTACACCGGAAAAGCGCACCCTGGAGCCGCTGCCTAATAATGGTCTGCCCGATGTTGTGCGATTCCTCTTCTTTGGAATGCACGGCTTTTTGGACGAGATCTTTTTTACCTCGATATTCAACCTTGTGGAGAAATCGGACCGGACCATGAGCGGCCACACGTCCCTGTGGTCCTTCCTGATGTACGGGAGCTGCAGCTTCGTGGTAGAGAAACTCTACCTGCATTTGCACTTCAGACGGGGCTGGAGCACCTGGAGGCGGCTCCCCATCTATATCTGCTTCATCTACACCTGGGAGTTCTGTTGGGGGCTGGCGCTGCGGCAGTACGGCGCATGCTCATGGGACTATTCCCACTATCCATTCAACTTCATGGGCCTGATCACGCTCCTCTACCTGCCCGGATGGGTCTGCATCAGTCTCTACCAGGATATTCTGTCCAGCGTTCTGCTGCGCGTGGTGGTGTGTGCCAAAGACGAGGAGTGAAGGCACCCAGGGCAGGGCGCTGGCATCAACGTCTGCCATGTGTCCAGGGAAAAAAACTGTATTATAGGCCTAGGTCACATTTGATTTAGGAACTATTGATACCAATACAAAGAAAGAAGAGGACATTTAAGACCATCAATGTTGTACCCGGACTTAAATCATGTGTATTTCCCTTGTGGAAATGTGGAATTGATGTGGCTGTTTAGACAGCATCTTTTATCAGTGATTCTAACAAATAGCCTATCAATTTGTGACAGGTAGCCTAAAAGCACAGACATGCCTTGCCTGGCATGTGATGACACACAGACATGCCTTCTGCTGTGATGACAACTGACATTTCGAACTTTGATGTAGATGAAACAATAATATTTAACATTTTACACTTTACTTGCTTGCTCATTTTAGAGCTGTGAATTATTTCCTAAACTATATTGACAAAGTCAGCCATATGCATGGAGGCACCATTTGACTAGATTGGTCTCTTCAATCCCAGAGCATGCTTTGAACTCATTTCTGCATGGCTGCATTCATGATCACTTAATTGCTTAAATCGTATTACCTTAAAAACAATGCATGACATTTGGAAATAAAATAGCTTCTAAAAAGTTCAAAATGTATGTAGCGTGAGATGTAATCGAACCGAATAGAACAGGTGGTGGACCGAATTCATTTCACTGTGAATCTTTTTCTGAACCAAACCTTAACCTTACTGTGTTGGAGTGCCTTTCTGAGCAAACCTACAGACAGCTGGACTAAAGACAAACTGAACTACACTGTGGGCCAGTTTCCCCCTAGGCCTGTCCGAACTCAAAATGAAGCTCAATGGGGAATTGATAGTGCTTTTTAGTCTACAACTATAGGCTTAATCTGGGTCATGTAAACAGGCAATGTGTGCCAATCAGACAGACCCTGATGATCAGCTTTATATTTCTCCCTTCGTTACATAGGGGCATCCCAGCCCCAGGCTTGTTTACCTAACATTTATAAAGCAGTGGAGCACGAGTCAGATTTTTATGGTTTACACTATAGGTTGATCTGGAATGGGCAATATCGGGAgtcagcagacctgggttcaaatactacttGAAATCTTTCAGGCACTTTCACTGTTTGTTTTAACCTGCCCGGAGTGCGAGATGGACGGGGTTTGGGGTTTGAATTTTTGCagctattctattggttccacgCCAGGAAAGCTCAATCAAGCCtagataaagtatttgaaatgatttcagaatagtatttgaatccaggtctggGATCAACCTCCATGCATAGAGCTCTTTGGCATATATCTTTCTGCCTGTTTTATTTCCTCGTTTGCCAATGTACCAAACGGTCAAGTCTCATGTTCTCTCTGAGGGgccaaacacatacagtatgtgtggataCCTGGCACTGTGACTTCATTAGCAACCTGTTCCAACCTTATACTCTTTGGAAAGTACGTTTTGAAACCTATCGTTTTTGCTATTTTTACTGATTGTCATGATTCTCTAGCATGTTTTTAATGCATTTTACTGCCTGCCTTCATCAGTCTTGGGGATCCCGTGAAACGAAGGTTGGAGGTAACTGAAAGCTGGTAATATTGATGAGTAATACTAGTGCAGGGAGAAATATCTTATAACATAATGTCATTAAAATATTACAACTTTTACACATGTTGATTTGTGTCAGATTGTTATGAATATGGACTGAATGTTTCATGCCGTGGGAGTTTCCCTGTCCTGCGCGAACAAACAATACCTTCCAGTCGTCTGGAGACTCACACTGGACGGACTGAAATGACACAATTATTTTCCTTTTGGTTTGTCGTTTCAAAATGGTGGGCTTTTGTTGTGAGCGATGCAAAAGAAGGATACACATGGTGAATAGGACCAGGAGTTTCTTTCCTGGTTATGTGGTCGGGGAGGATCTCCTGTCCCTGGTGAAGTTGTTATCTTAACTATATGACAAGGTTTCTTTTCAAATGTGAGGTTTGGAAATCGTTGATCAACTGTATTTAATAATACACTACAATCATGTACTACATGGCTCACAATGAGGAAGTAAAACCATGTTTATTTTAGGTTATAAATGAAGGGAGCCCGAAAGTATTCTTGCTATAGTATGCCCATGGTGGAATTGAATTGAATCAATCACTGGATGGAAATAGTGTTGcctgtatactgtacattactTCAATCTCAAAGAATTCCATGTTGAACCGACAAGGTTGGCCCAGTTCATGTTCATGTTGTCTTGATTGACGTTGTGCTCTCACTAAATTGTTTGTATTTACAGgttgtctgtgtttctctcaGATCAGCTTCCTTGGAAAGCTGCACAATGTCATAAAAAACTAAATGCCTGACCTTTACAGGAAACCGCACCTCAAATATATAAAGTCAACACTGCTCTGTGAGTGGATCAAGA

Function

NR:

description
transmembrane protein 229A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563571.2 True 3720 mRNA 0.45 1 52122586 52126305

Neighbor

gene id symbol gene type direction distance location
LOC110490274 LOC106576108 coding upstream 48042 52064879 ~ 52074544 (+)
LOC110490742 LOC106609203 coding upstream 392052 51411245 ~ 51730534 (+)
LOC110490271 LOC106576088 coding upstream 718185 51386269 ~ 51404401 (+)
atxn7l1 LOC106576087 coding upstream 740007 51351361 ~ 51382579 (+)
LOC118938813 NA coding upstream 756273 51364012 ~ 51366313 (+)
LOC110490276 LOC106576110 coding downstream 27850 52154155 ~ 52176143 (+)
LOC110490280 LOC106609195 coding downstream 78520 52204825 ~ 52207709 (+)
LOC110490279 LOC106576114 coding downstream 193317 52319622 ~ 52327848 (+)
LOC110490283 dus4l coding downstream 221819 52348124 ~ 52366962 (+)
LOC110490848 LOC106609256 coding downstream 839543 52965848 ~ 52968742 (+)
G1305033 NA non-coding upstream 12540 52068728 ~ 52110046 (+)
G1305026 NA non-coding upstream 79821 52042536 ~ 52042765 (+)
G1304932 NA non-coding upstream 172797 51949589 ~ 51949789 (+)
G1304931 NA non-coding upstream 174106 51948232 ~ 51948480 (+)
G1304895 LOC107662719 non-coding upstream 200599 51921348 ~ 51921987 (+)
G1305145 LOC106609192 non-coding downstream 87221 52213526 ~ 52238349 (+)
G1305176 NA non-coding downstream 175699 52302004 ~ 52302222 (+)
G1305183 NA non-coding downstream 186378 52312683 ~ 52312899 (+)
G1305175 NA non-coding downstream 202421 52328726 ~ 52329622 (+)
G1305193 NA non-coding downstream 207339 52333644 ~ 52334232 (+)
G1304886 NA other upstream 207576 51914597 ~ 51915010 (+)
G1304083 NA other upstream 469586 51584754 ~ 51653000 (+)
G1303950 LOC106576084 other upstream 822825 51299403 ~ 51299761 (+)
G1305302 NA other downstream 386324 52512629 ~ 52513050 (+)
sox5 LOC106576150 other downstream 1226312 53352462 ~ 53471763 (+)
G1306708 NA other downstream 1454236 53580541 ~ 53583352 (+)
LOC110490314 LOC106576157 other downstream 1762923 53875911 ~ 53890829 (+)
LOC110490339 LOC106576184 other downstream 3031701 55157706 ~ 55170847 (+)

Expression


Co-expression Network